1 ARCHAEA 4310 seqs 1.1 EURYARCHAEOTA 2974 seqs 1.1.1 METHANOCOCCALES 217 seqs 1.1.1.1 MC.JANNASCHII_GROUP 193 seqs 1.1.1.1.001 OTU 5 seqs prokMSA_id:000027 AJ236467 clone ST1-16. prokMSA_id:000028 AJ236483 clone S15-2. prokMSA_id:000029 AJ236485 clone S15-4. prokMSA_id:000030 AJ236487 clone S15-6. prokMSA_id:000031 AJ236515 clone S30-7. 1.1.1.1.002 OTU 2 seqs prokMSA_id:070441 AF220345 Archaeal str. vp183 prokMSA_id:000026 M59128 Methanococcus thermolithotrophicus str. SN-1 DSM 2095 . 1.1.1.1.003 OTU 8 seqs prokMSA_id:000023 AF052951 clone FF619. prokMSA_id:000009 AF121990 str. DCM65231. prokMSA_id:000022 AF121996 str. DCM865. prokMSA_id:017623 AF290523 marine AEGEAN_63 prokMSA_id:032784 AF290524 marine AEGEAN_64 prokMSA_id:020230 AF355836 33-FL25A00 prokMSA_id:028715 AF355856 33-FL24A00 prokMSA_id:033866 AF355857 33-P39A00 1.1.1.1.004 OTU 1 seq prokMSA_id:000021 AB019743 clone pMC2A5. 1.1.1.1.006 OTU 3 seqs prokMSA_id:000010 AF052944 clone TS10C294. prokMSA_id:000019 AF052950 clone GIN492. prokMSA_id:000008 AF121986 str. DCM6515. 1.1.1.1.007 OTU 1 seq prokMSA_id:000018 AJ227955 clone ABS12. 1.1.1.1.009 OTU 15 seqs prokMSA_id:000020 AF025822 Methanococcus infernus str. ME DSM 11812 . prokMSA_id:000017 AF051404 Methanocaldococcus vulcanius str. M7. prokMSA_id:000016 AF056938 Methanocaldococcus fervens str. AG86 DSM 4213 . prokMSA_id:037156 AF355922 33-P62A98 prokMSA_id:030505 AF355923 33-P104A98 prokMSA_id:017926 AF355926 33-P57A99 prokMSA_id:068332 AF356630 clone G26_C46 prokMSA_id:068331 AF356633 clone G26_C50 prokMSA_id:068333 AF356634 clone G26_C51 prokMSA_id:068330 AF356636 clone G26_C63 prokMSA_id:070924 AF356638 clone G26_C82 prokMSA_id:063633 AF526989 clone pEPR809 prokMSA_id:063631 AF526990 clone pEPR171 prokMSA_id:000005 L77117 Methanococcus jannaschii =rrnB . prokMSA_id:000001 L77117 Methanococcus jannaschii = . 1.1.1.1.010 OTU 9 seqs prokMSA_id:000015 AB019739 clone pMC2A10. prokMSA_id:041367 AB052985 pPACMA-P prokMSA_id:030970 AB052990 pPACMA-W prokMSA_id:000014 AF068820 clone VC2.1 Arc13. prokMSA_id:056356 AF356635 clone G26_C56 prokMSA_id:068328 AF356637 clone G26_C73 prokMSA_id:063654 AF526961 clone pEPR707 prokMSA_id:055306 AF526962 clone pEPR719 prokMSA_id:063650 AF526965 clone pEPR193 1.1.1.1.011 OTU 1 seq prokMSA_id:000013 AF068817 clone VC2.1 Arc6. 1.1.1.1.012 OTU 1 seq prokMSA_id:000007 AB019734 clone pMC2A384. 1.1.1.1.013 OTU 1 seq prokMSA_id:000006 Y18092 clone Rot20. 1.1.1.1.014 OTU 1 seq prokMSA_id:000004 AB019749 clone pISA18. 1.1.1.1.015 OTU 1 seq prokMSA_id:000002 AJ227954 clone ABS9. 1.1.1.1.016 OTU 4 seqs prokMSA_id:047755 D88486 SWY prokMSA_id:044071 D88487 SW9 prokMSA_id:017485 D88488 SW3 prokMSA_id:018323 D88489 SC4 1.1.1.1.017 OTU 1 seq prokMSA_id:017950 Y18089 archeobacteria Clone Rot13 1.1.1.1.018 OTU 33 seqs prokMSA_id:048249 AB057722 Methanothermococcus okinawensis prokMSA_id:069255 AB072726 clone:pHAuA-43 prokMSA_id:051255 AF355881 33-FL15A99 prokMSA_id:028395 AF355882 33-FL13A99 prokMSA_id:054263 AF355883 33-FL4A99 prokMSA_id:030629 AF355884 33-FL7A99 prokMSA_id:054378 AF355885 33-FL36A99 prokMSA_id:020411 AF355886 33-FL38A99 prokMSA_id:035155 AF355887 33-FL45A99 prokMSA_id:026022 AF355888 33-FL49A99 prokMSA_id:031815 AF355889 33-FL56A99 prokMSA_id:032049 AF355890 33-FL120A99 prokMSA_id:040049 AF355891 33-FL128A99 prokMSA_id:035603 AF355892 33-FL58A99 prokMSA_id:045724 AF355893 33-FL109A99 prokMSA_id:035710 AF355894 33-FL70A99 prokMSA_id:030679 AF355895 33-FL84A99 prokMSA_id:028697 AF355899 33-P114A98 prokMSA_id:034966 AF355900 33-P123A98 prokMSA_id:031241 AF355902 33-P111A99 prokMSA_id:021809 AF355903 33-P15A99 prokMSA_id:018900 AF355904 33-P44A99 prokMSA_id:047089 AF355905 33-P55A99 prokMSA_id:041928 AF355906 33-P88A99 prokMSA_id:022954 AF355910 33-FL71A99 prokMSA_id:027637 AF355913 33-P132A98 prokMSA_id:034850 AF355917 33-P63A00 prokMSA_id:040970 AF355918 33-P70A00 prokMSA_id:031457 AF355919 33-P57A00 prokMSA_id:052459 AF355920 33-P86A00 prokMSA_id:073911 AF356628 clone G26_C5 prokMSA_id:069745 AF356629 clone G26_C45 prokMSA_id:069659 AF356632 clone G26_C49 1.1.1.1.019 OTU 1 seq prokMSA_id:020800 AF355814 33-FL18A98 1.1.1.1.020 OTU 1 seq prokMSA_id:056687 AY166004 clone FZ2aA11 1.1.1.1.021 OTU 1 seq prokMSA_id:024918 AF290516 marine AEGEAN_50 1.1.1.1.022 OTU 1 seq prokMSA_id:059078 AJ294863 19b-30 clone 19b-30 1.1.1.1.023 OTU 1 seq prokMSA_id:026100 AB050209 SAGMA-E 1.1.1.1.024 OTU 1 seq prokMSA_id:027504 AF424534 euryarchaeote MERTZ_21CM_64 1.1.1.1.025 OTU 1 seq prokMSA_id:028567 AF355880 33-FL31A00 1.1.1.1.026 OTU 1 seq prokMSA_id:029288 AJ227951 archaebacteria clone ABS3 1.1.1.1.027 OTU 1 seq prokMSA_id:029806 D88485 SC6 1.1.1.1.028 OTU 1 seq prokMSA_id:032096 AF402988 clone archaeap14 1.1.1.1.029 OTU 1 seq prokMSA_id:033927 AF224869 clone Car154fc 1.1.1.1.030 OTU 5 seqs prokMSA_id:063668 AF526946 clone pEPR839 prokMSA_id:063665 AF526947 clone pEPR866 prokMSA_id:063664 AF526948 clone pEPR895 prokMSA_id:056571 AF527006 clone pEPR596 prokMSA_id:063610 AF527007 clone pEPR597 1.1.1.1.031 OTU 1 seq prokMSA_id:049153 D88480 SC2 1.1.1.1.032 OTU 1 seq prokMSA_id:052158 AF424536 euryarchaeote MERTZ_21CM_297 1.1.1.1.033 OTU 1 seq prokMSA_id:052417 D88481 SW14 1.1.1.1.036 OTU 7 seqs prokMSA_id:056779 AY165981 clone FZ1aA17 prokMSA_id:056770 AY165990 clone FZ1aA158 prokMSA_id:056749 AY166010 clone FZ2bA26 prokMSA_id:056742 AY166012 clone FZ2bA42 prokMSA_id:056738 AY166013 clone FZ2bA43 prokMSA_id:056741 AY166018 clone FZ2bA63 prokMSA_id:056734 AY166020 clone FZ2bA105 1.1.1.1.037 OTU 1 seq prokMSA_id:054381 AY063679 clone RS0-24 1.1.1.1.038 OTU 1 seq prokMSA_id:062874 AB077230 euryarchaeote clone:KuA20 1.1.1.1.039 OTU 1 seq prokMSA_id:062878 AB077228 euryarchaeote clone:KuA18 1.1.1.1.040 OTU 1 seq prokMSA_id:062880 AB077227 euryarchaeote clone:KuA17 1.1.1.1.041 OTU 5 seqs prokMSA_id:063669 AF526943 clone pEPR731 prokMSA_id:063666 AF526944 clone pEPR824 prokMSA_id:063667 AF526945 clone pEPR802 prokMSA_id:063662 AF526950 clone pEPR758 prokMSA_id:063609 AF527009 clone pEPR599 1.1.1.1.042 OTU 1 seq prokMSA_id:063653 AF526959 clone pEPR119 1.1.1.1.043 OTU 1 seq prokMSA_id:073906 AB050210 SAGMA-F 1.1.1.1.999 poor quality 69 seqs prokMSA_id:000012 AB007315 clone pUWA9. prokMSA_id:029225 AB049033 pPCA7.6 prokMSA_id:036318 AB049034 pPCA7.13 prokMSA_id:018673 AB049035 pPCA7.17 prokMSA_id:044303 AB049036 pPCA7.34 prokMSA_id:055444 AB077229 euryarchaeote clone:KuA19 prokMSA_id:017133 AF142929 PENDANT-17 prokMSA_id:036239 AF142944 PENDANT-33 prokMSA_id:017749 AF218426 euryarchaeote clone A2M2 prokMSA_id:070805 AF220347 Archaeal str. vp21 prokMSA_id:041430 AF223137 euryarchaeote CA-15_27 prokMSA_id:023001 AF223139 euryarchaeote CA-15_P4 prokMSA_id:027915 AF224864 clone Car65fc prokMSA_id:029681 AF355812 33-FL1A99 prokMSA_id:023715 AF355835 33-P59A99 prokMSA_id:037693 AF355837 33-P127A99 prokMSA_id:031919 AF355838 33-P120A99 prokMSA_id:037523 AF355839 33-P71A98 prokMSA_id:023401 AF355840 33-P23A98 prokMSA_id:048609 AF355896 33-P28A98 prokMSA_id:029959 AF355897 33-P85A98 prokMSA_id:038007 AF355898 33-P102A98 prokMSA_id:043510 AF355907 33-FL96A98 prokMSA_id:018519 AF355908 33-FL3A99 prokMSA_id:048623 AF355909 33-FL19A99 prokMSA_id:051885 AF355911 33-FL130A99 prokMSA_id:047018 AF355912 33-FL43A99 prokMSA_id:049443 AF355914 33-P10A99 prokMSA_id:016471 AF355915 33-P20A99 prokMSA_id:017795 AF355916 33-P62A99 prokMSA_id:040232 AF355921 33-FL15A98 prokMSA_id:029832 AF355924 33-P10A98 prokMSA_id:035198 AF355925 33-P15A98 prokMSA_id:028867 AF355927 33-FL27A98 prokMSA_id:068828 AF473900 euryarchaeote r-5_05C prokMSA_id:026138 AF473901 euryarchaeote t42_18C prokMSA_id:064112 AF477915 clone 4-PML 8% pond prokMSA_id:064111 AF477916 clone 5-PML 8% pond prokMSA_id:064110 AF477918 clone 7-PML 8% pond prokMSA_id:064109 AF477919 clone 8-PML 8% pond prokMSA_id:064106 AF477922 clone 11-PML 8% pond prokMSA_id:063618 AF527003 clone pEPR594 prokMSA_id:063616 AF527004 clone pEPR595 prokMSA_id:059406 AF540864 clone DP11u31 prokMSA_id:059403 AF540870 clone ME25-2 prokMSA_id:036216 AJ239990 euryarchaeote strain DGGE band CIARC-3 prokMSA_id:018628 AJ240004 euryarchaeote strain DGGE band VIARC-1 prokMSA_id:059021 AJ299171 20b-26 clone 20b-26 prokMSA_id:059012 AJ299183 20c-4 clone 20c-4 prokMSA_id:059013 AJ299186 20c-12 clone 20c-12 prokMSA_id:059000 AJ299195 20c-29 clone 20c-29 prokMSA_id:058999 AJ299197 20c-39 clone 20c-39 prokMSA_id:058994 AJ299198 20c-42 clone 20c-42 prokMSA_id:068419 AJ306413 thermoplasmales BANARC-5/6/7 DGGE bands BANARC-5/6/7 prokMSA_id:068418 AJ306416 Uzncultured thermoplasmales VIARC-5 DGGE band VIARC-5 prokMSA_id:068873 AY063680 clone RS0-25 prokMSA_id:074953 AY164296 clone BLIA-46 prokMSA_id:056254 AY165998 clone FZ2aA40 prokMSA_id:056747 AY166007 clone FZ2bA65 prokMSA_id:056730 AY166026 clone FZ2bA121 prokMSA_id:055229 AY166029 clone FZ2bA207 prokMSA_id:053159 D88483 SW1 prokMSA_id:030037 D88484 SC7 prokMSA_id:000025 M59125 Methanococcus igneus str. Kol 5 DSM 5666 . prokMSA_id:000003 M59126 Methanococcus jannaschii str. JAL-1 DSM 2661 . prokMSA_id:000033 NONE Methanococcus "aeolicus" str. A. prokMSA_id:000032 U39016 Methanococcus "aeolicus". prokMSA_id:000024 U63350 clone pSL1. prokMSA_id:000011 U63352 clone pSL55. 1.1.1.2 MC.MARIPALUDIS_GROUP 24 seqs 1.1.1.2.001 OTU 2 seqs prokMSA_id:000043 AF005049 Methanococcus maripaludis str. LL. prokMSA_id:000037 M36507 Methanococcus vannielii str. EY33. 1.1.1.2.002 OTU 3 seqs prokMSA_id:059074 AJ294864 19b-32 clone 19b-32 prokMSA_id:059076 AJ294866 19b-35 clone 19b-35 prokMSA_id:059053 AJ294891 19c-33 clone 19c-33 1.1.1.2.003 OTU 1 seq prokMSA_id:036765 AF306670 Methanococcus sp. P2F9701a 1.1.1.2.999 poor quality 18 seqs prokMSA_id:069002 AF376794 isolate MUAHR 7 prokMSA_id:069001 AF376795 isolate MUAHR 8 prokMSA_id:034455 AF376796 isolate MUAHR 9 prokMSA_id:069000 AF376798 isolate MUAHR 11 prokMSA_id:059409 AF540865 clone ME10-1 prokMSA_id:058298 AF543691 prokMSA_id:048293 AY032992 ASDS13 prokMSA_id:069004 AY032993 ASDS14 prokMSA_id:000035 M59290 Methanococcus voltae str. PS ATCC 33273 . prokMSA_id:000044 NONE Methanococcus maripaludis str. JJ ATCC 43000 . prokMSA_id:000042 NONE Methanococcus maripaludis str. D. prokMSA_id:000034 U38461 Methanococcus voltae str. PS DSM 1537 . prokMSA_id:000045 U38484 Methanococcus maripaludis str. JJ DSM 2067 . prokMSA_id:000041 U38485 Methanococcus maripaludis str. delta RC DSM 2771 . prokMSA_id:000038 U38486 Methanococcus maripaludis str. C5 OCM 209. prokMSA_id:000040 U38487 Methanococcus maripaludis str. C6 OCM 363. prokMSA_id:000036 U38488 Methanococcus voltae str. A3 OCM 197. prokMSA_id:000039 U38941 Methanococcus maripaludis str. C7 OCM 364. 1.1.2 METHANOBACTERIALES 608 seqs 1.1.2.1 MT.FERVIDUS_GROUP 73 seqs 1.1.2.1.001 OTU 1 seq prokMSA_id:000054 AB019736 clone pMC2A24. 1.1.2.1.002 OTU 1 seq prokMSA_id:000052 AJ133624 clone KTK 28A. 1.1.2.1.003 OTU 3 seqs prokMSA_id:039923 AF199377 Euryarchaeote J4.75-24 prokMSA_id:000051 AJ133623 clone KTK 18A. prokMSA_id:033564 AJ347789 SA2 group euryarchaeote clone ST-12K22A 1.1.2.1.004 OTU 1 seq prokMSA_id:000050 AJ133622 clone KTK 9A. 1.1.2.1.005 OTU 1 seq prokMSA_id:000049 AF119139 unnamed organism. 1.1.2.1.006 OTU 1 seq prokMSA_id:000048 AF118660 clone pBRKC82. 1.1.2.1.007 OTU 1 seq prokMSA_id:000046 M32222 Methanothermus fervidus. 1.1.2.1.008 OTU 1 seq prokMSA_id:018294 AJ347790 SA2 group euryarchaeote clone ST-12K24A 1.1.2.1.009 OTU 7 seqs prokMSA_id:059082 AJ294856 19b-8 clone 19b-8 prokMSA_id:059073 AJ294867 19b-37 clone 19b-37 prokMSA_id:059069 AJ294871 19b-42 clone 19b-42 prokMSA_id:056185 AJ299153 20a-9 clone 20a-9 prokMSA_id:059011 AJ299179 20b-47 clone 20b-47 prokMSA_id:059006 AJ299188 20c-17 clone 20c-17 prokMSA_id:058996 AJ299199 20c-43 clone 20c-43 1.1.2.1.010 OTU 1 seq prokMSA_id:056758 AY165999 clone FZ2aA51 1.1.2.1.011 OTU 1 seq prokMSA_id:056752 AY166006 clone FZ2aA72 1.1.2.1.012 OTU 1 seq prokMSA_id:056750 AY166008 clone FZ2bA3 1.1.2.1.013 OTU 1 seq prokMSA_id:056745 AY166024 clone FZ2bA112 1.1.2.1.014 OTU 1 seq prokMSA_id:068401 AF355871 33-P43A99 1.1.2.1.015 OTU 1 seq prokMSA_id:075045 AY164325 candidate division MSBL1 clone ULIA-29 1.1.2.1.016 OTU 4 seqs prokMSA_id:076278 AY164275 candidate division MSBL1 clone ALIA-100 prokMSA_id:075090 AY164297 candidate division MSBL1 clone BLIA-54 prokMSA_id:076220 AY164316 candidate division MSBL1 clone DLIA-199 prokMSA_id:076403 AY164332 candidate division MSBL1 clone ULIA-89 1.1.2.1.017 OTU 2 seqs prokMSA_id:076113 AY164284 clone ALIA-152 prokMSA_id:075109 AY164329 clone ULIA-74 1.1.2.1.018 OTU 4 seqs prokMSA_id:075441 AY164282 clone ALIA-125 prokMSA_id:075338 AY164304 clone DLIA-10 prokMSA_id:075546 AY164307 clone DLIA-14 prokMSA_id:076949 AY164330 clone ULIA-82 1.1.2.1.019 OTU 3 seqs prokMSA_id:075606 AY164286 candidate division MSBL1 clone ALIA-161 prokMSA_id:076177 AY164308 candidate division MSBL1 clone DLIA-140 prokMSA_id:076798 AY164333 candidate division MSBL1 clone ULIA-93 1.1.2.1.020 OTU 3 seqs prokMSA_id:075746 AY164283 candidate division MSBL1 clone ALIA-135 prokMSA_id:076484 AY164314 candidate division MSBL1 clone DLIA-170 prokMSA_id:077009 AY164328 candidate division MSBL1 clone ULIA-68 1.1.2.1.022 OTU 2 seqs prokMSA_id:076938 AY164276 candidate division MSBL1 clone ALIA-103 prokMSA_id:076337 AY164312 candidate division MSBL1 clone DLIA-161 1.1.2.1.023 OTU 2 seqs prokMSA_id:076400 AY164288 candidate division MSBL1 clone ALIA-69 prokMSA_id:076526 AY164313 candidate division MSBL1 clone DLIA-166 1.1.2.1.025 OTU 4 seqs prokMSA_id:076935 AY164280 candidate division MSBL1 clone ALIA-122 prokMSA_id:077102 AY164305 candidate division MSBL1 clone DLIA-100 prokMSA_id:075766 AY164309 candidate division MSBL1 clone DLIA-141 prokMSA_id:076411 AY164323 candidate division MSBL1 clone ULIA-110 1.1.2.1.999 poor quality 26 seqs prokMSA_id:000053 AF095273 Methanothermus sociabilis str. Kf1-F1. prokMSA_id:035763 AF355810 33-P120A98 prokMSA_id:068411 AF355858 33-FL8A99 prokMSA_id:068410 AF355859 33-FL21A99 prokMSA_id:068412 AF355860 33-FL29A99 prokMSA_id:068413 AF355861 33-FL64A99 prokMSA_id:068414 AF355862 33-FL113A99 prokMSA_id:068407 AF355863 33-FL116A99 prokMSA_id:068408 AF355864 33-FL1A00 prokMSA_id:068409 AF355865 33-P25A98 prokMSA_id:068405 AF355866 33-P73A99 prokMSA_id:068402 AF355867 33-P74A99 prokMSA_id:068403 AF355868 33-P90A99 prokMSA_id:068406 AF355869 33-P93A99 prokMSA_id:068404 AF355870 33-P98A99 prokMSA_id:068400 AF355872 33-P41A99 prokMSA_id:064119 AF477908 clone 42-UMH 8% pond prokMSA_id:064117 AF477910 clone 52-UMH 8% pond prokMSA_id:064105 AF477923 clone 12-PML 8% pond prokMSA_id:059030 AJ299163 20b-9 clone 20b-9 prokMSA_id:059010 AJ299185 20c-10 clone 20c-10 prokMSA_id:059009 AJ299187 20c-16 clone 20c-16 prokMSA_id:076530 AY164279 candidate division MSBL1 clone ALIA-12 prokMSA_id:075664 AY164289 candidate division MSBL1 clone ALIA-8 prokMSA_id:000055 M59145 Methanothermus fervidus str. V 24 S DSM 2088 . prokMSA_id:000047 U63354 clone pSL79. 1.1.2.2 METHANOBACTERIUM_GROUP 535 seqs 1.1.2.2.1 MB.FORMICICUM_SUBGROUP 411 seqs 1.1.2.2.1.004 OTU 1 seq prokMSA_id:000200 AJ131265 clone VAL68. 1.1.2.2.1.005 OTU 6 seqs prokMSA_id:062886 AB077223 euryarchaeote clone:KuA13 prokMSA_id:000201 AF050614 clone WCHA1-57. prokMSA_id:032110 AF424763 69-1 prokMSA_id:051118 AF424764 46-1 prokMSA_id:052425 AF424765 44A-1 prokMSA_id:027098 AF424769 39-2 1.1.2.2.1.009 OTU 217 seqs prokMSA_id:000140 AB008900 Methanobrevibacter termite gut Cd30. prokMSA_id:000148 AB009821 Methanobrevibacter sp. prokMSA_id:000129 AB009827 Methanobrevibacter sp. prokMSA_id:000115 AB017514 Methanobrevibacter sp. str. MB-9. prokMSA_id:000161 AB022181 Methanobrevibacter R1. prokMSA_id:000162 AB022182 Methanobrevibacter R2. prokMSA_id:000163 AB022183 Methanobrevibacter R3. prokMSA_id:000164 AB022184 Methanobrevibacter R4. prokMSA_id:000165 AB022185 Methanobrevibacter R5. prokMSA_id:000112 AB026168 clone MIp1. prokMSA_id:000171 AB026169 clone MIp2. prokMSA_id:000113 AB026170 clone MEm1. prokMSA_id:000172 AB026171 clone MEm2. prokMSA_id:000173 AB026173 clone MPm1. prokMSA_id:000174 AB026174 clone MPm2. prokMSA_id:000212 AB026175 clone MPm3. prokMSA_id:000151 AB026912 Methanobrevibacter LRsD2. prokMSA_id:000131 AB026913 Methanobrevibacter LRsD3. prokMSA_id:000119 AB026914 Methanobrevibacter LRsM1. prokMSA_id:000152 AB026915 Methanobrevibacter RsW2. prokMSA_id:000120 AB026916 Methanobrevibacter RsW10. prokMSA_id:000121 AB026917 Methanobrevibacter RsI4. prokMSA_id:000175 AB026918 Methanobrevibacter RsI12. prokMSA_id:000153 AB026919 Methanobrevibacter RsI17. prokMSA_id:000154 AB026920 Methanobrevibacter LHD2. prokMSA_id:000155 AB026921 Methanobrevibacter LHD12. prokMSA_id:000156 AB026922 Methanobrevibacter LHM8. prokMSA_id:000157 AB026923 Methanobrevibacter HW1. prokMSA_id:000158 AB026924 Methanobrevibacter HW2. prokMSA_id:000141 AB026925 Methanobrevibacter HW3. prokMSA_id:000159 AB026926 Methanobrevibacter HI1. prokMSA_id:000176 AB026927 Methanobrevibacter HI26. prokMSA_id:000160 AB026928 Methanobrevibacter HI28. prokMSA_id:039741 AB033290 Methanobrevibacter sp. LRsD4 prokMSA_id:043504 AB033291 Methanobrevibacter sp. RsW3 prokMSA_id:026500 AB033292 Methanobrevibacter sp. RsI3 prokMSA_id:039249 AB033293 Methanobrevibacter sp. HW23 prokMSA_id:038084 AB034183 rumen methanogen 956 prokMSA_id:029783 AB034185 rumen methanogen M6 prokMSA_id:021086 AB034188 rumen methanogen 15 prokMSA_id:024414 AB065294 Methanobrevibacter arboriphilus prokMSA_id:000079 AF028688 Methanobacterium bryantii str. RiH2. prokMSA_id:000134 AF028689 Methanobacterium formicicum str. FCam. prokMSA_id:040123 AF028690 Methanobacterium sp. DSM 11106 complete prokMSA_id:000087 AF029171 Methanobrevibacter methanogen ARC1. prokMSA_id:000088 AF029172 Methanobrevibacter methanogen ARC12. prokMSA_id:000089 AF029173 Methanobrevibacter methanogen ARC15. prokMSA_id:000090 AF029174 Methanobrevibacter methanogen ARC20. prokMSA_id:000091 AF029175 Methanobrevibacter methanogen ARC23. prokMSA_id:000092 AF029176 Methanobrevibacter methanogen ARC24. prokMSA_id:000093 AF029177 Methanobrevibacter methanogen ARC28. prokMSA_id:000094 AF029178 Methanobrevibacter methanogen ARC32. prokMSA_id:000095 AF029179 Methanobrevibacter methanogen ARC40. prokMSA_id:000096 AF029180 Methanobrevibacter methanogen ARC44. prokMSA_id:000097 AF029181 Methanobrevibacter methanogen ARC51. prokMSA_id:000098 AF029182 Methanobrevibacter methanogen ARC52. prokMSA_id:000099 AF029183 Methanobrevibacter methanogen ARC53. prokMSA_id:000100 AF029184 Methanobrevibacter methanogen ARC61. prokMSA_id:000101 AF029185 Methanobrevibacter methanogen ARC65. prokMSA_id:000102 AF029186 Methanobrevibacter methanogen ARC13. prokMSA_id:000103 AF029187 Methanobrevibacter methanogen ARC19. prokMSA_id:000104 AF029188 Methanobrevibacter methanogen ARC25. prokMSA_id:000105 AF029189 Methanobrevibacter methanogen ARC26. prokMSA_id:000106 AF029190 Methanobrevibacter methanogen ARC27. prokMSA_id:000107 AF029191 Methanobrevibacter methanogen ARC33. prokMSA_id:000108 AF029192 Methanobrevibacter methanogen ARC41. prokMSA_id:000109 AF029193 Methanobrevibacter methanogen ARC50. prokMSA_id:000110 AF029194 Methanobrevibacter methanogen ARC66. prokMSA_id:000111 AF157524 Methanobrevibacter Ar40. prokMSA_id:047354 AF225602 clone AS00-34 prokMSA_id:036339 AF225604 clone AS01-01 prokMSA_id:069941 AF225615 clone AS01-13 prokMSA_id:042605 AF225618 clone AS01-16 prokMSA_id:031450 AF225620 clone AS01-18 prokMSA_id:024114 AF225673 clone AS17-11 prokMSA_id:054274 AF225681 clone AS17-21 prokMSA_id:044183 AF233586 Methanobacterium congolense prokMSA_id:022694 AF242652 Methanobrevibacter sp. ATM prokMSA_id:018599 AF276958 Methanobacterium curvum prokMSA_id:023319 AF293481 euryarchaeote clone P4b-Ar-1 prokMSA_id:043519 AF293483 euryarchaeote clone P4b-Ar-11 prokMSA_id:037767 AF293486 euryarchaeote clone P4b-Ar-14 prokMSA_id:040431 AF293487 euryarchaeote clone P4b-Ar-15 prokMSA_id:029882 AF293489 euryarchaeote clone P4b-Ar-17 prokMSA_id:047630 AF293492 euryarchaeote clone P4b-Ar-20 prokMSA_id:047647 AF293493 euryarchaeote clone P4b-Ar-23 prokMSA_id:019826 AF293496 euryarchaeote clone P4b-Ar-27 prokMSA_id:049339 AF293497 euryarchaeote clone P4b-Ar-28 prokMSA_id:046530 AF293499 euryarchaeote clone P4b-Ar-3 prokMSA_id:052146 AF293500 euryarchaeote clone P4b-Ar-30 prokMSA_id:045843 AF293502 euryarchaeote clone P4b-Ar-5 prokMSA_id:073262 AF293503 euryarchaeote clone P4b-Ar-6 prokMSA_id:020956 AF293505 euryarchaeote clone P4b-Ar-8 prokMSA_id:030931 AF293542 euryarchaeote clone P5-Ar2-25 prokMSA_id:074533 AF293543 euryarchaeote clone P5-Ar2-27 prokMSA_id:029238 AF293550 euryarchaeote clone P5-Ar-14 prokMSA_id:052506 AF293552 euryarchaeote clone P5-Ar-5 prokMSA_id:042915 AF293553 euryarchaeote clone P5-Ar-6 prokMSA_id:045370 AF293554 euryarchaeote clone P5-Ar-7 prokMSA_id:049936 AF293555 euryarchaeote clone P5-Ar-9 prokMSA_id:023055 AF293556 euryarchaeote clone P3-Ar-1 prokMSA_id:017042 AF293558 euryarchaeote clone P3-Ar-11 prokMSA_id:017597 AF293559 euryarchaeote clone P3-Ar-12 prokMSA_id:052135 AF293560 euryarchaeote clone P3-Ar-13 prokMSA_id:041676 AF293561 euryarchaeote clone P3-Ar-14 prokMSA_id:040420 AF293562 euryarchaeote clone P3-Ar-16 prokMSA_id:021844 AF293566 euryarchaeote clone P3-Ar-21 prokMSA_id:047086 AF293567 euryarchaeote clone P3-Ar-22 prokMSA_id:026591 AF293571 euryarchaeote clone P3-Ar-26 prokMSA_id:045768 AF293572 euryarchaeote clone P3-Ar-27 prokMSA_id:031914 AF293573 euryarchaeote clone P3-Ar-28 prokMSA_id:028673 AF293575 euryarchaeote clone P3-Ar-4 prokMSA_id:074676 AF293579 euryarchaeote clone P3-Ar-6 prokMSA_id:019864 AF293580 euryarchaeote clone P5-Ar-15 prokMSA_id:070365 AF293581 euryarchaeote clone P5-Ar2-1 prokMSA_id:021576 AF293582 euryarchaeote clone P5-Ar2-15 prokMSA_id:052883 AF293583 euryarchaeote clone P5-Ar2-16 prokMSA_id:046993 AF293584 euryarchaeote clone P5-Ar2-21 prokMSA_id:032604 AF293585 euryarchaeote clone P5-Ar2-26 prokMSA_id:051453 AF293586 euryarchaeote clone P5-Ar2-30 prokMSA_id:027780 AF293588 euryarchaeote clone P3-Ar-29 prokMSA_id:045561 AF395425 Arc No. 20 prokMSA_id:073186 AF455071 clone A6 prokMSA_id:071166 AF455072 clone A7 prokMSA_id:073107 AF481340 clone Fuku05 prokMSA_id:077486 AF524847 26-4a1 prokMSA_id:077526 AF524848 26-4a6 prokMSA_id:077331 AF524849 26-5a1 prokMSA_id:077464 AF524850 26-a101 prokMSA_id:077567 AF524851 26-a134 prokMSA_id:000130 AJ009958 Methanobrevibacter sp. str. SM9. prokMSA_id:000114 AJ009959 Methanobrevibacter sp. str. NT7. prokMSA_id:024205 AJ132639 methanogenic endosymbiont of Nyctotherus ovalis prokMSA_id:019108 AJ132640 methanogenic endosymbiont of Nyctotherus ovalis prokMSA_id:037652 AJ132641 methanogenic endosymbiont of Nyctotherus ovalis prokMSA_id:044812 AJ132642 methanogenic endosymbiont of Nyctotherus ovalis prokMSA_id:074782 AJ132643 methanogenic endosymbiont of Nyctotherus ovalis prokMSA_id:041745 AJ132644 methanogenic endosymbiont of Nyctotherus ovalis prokMSA_id:030104 AJ132645 methanogenic endosymbiont of Nyctotherus ovalis prokMSA_id:027589 AJ132646 methanogenic endosymbiont of Nyctotherus cordiformis prokMSA_id:000189 AJ227934 clone ARR21. prokMSA_id:000190 AJ227938 clone ARR25. prokMSA_id:000191 AJ227939 clone ARR26. prokMSA_id:000192 AJ227947 clone ARR36. prokMSA_id:000193 AJ227949 clone ARR39. prokMSA_id:000180 AJ236495 clone S15-14. prokMSA_id:048470 AJ244298 anaerobic methanogenic E30-2 prokMSA_id:035393 AJ288311 clone AC4 prokMSA_id:027169 AJ288320 clone AC103 prokMSA_id:041437 AJ290561 Cas18#2 prokMSA_id:050500 AJ290562 Cas18#3 prokMSA_id:048678 AJ308904 euryarchaeote clone ARS1-c1 prokMSA_id:072126 AJ308905 euryarchaeote clone ARS1-c5 prokMSA_id:071941 AJ308906 euryarchaeote clone ARS1-c7 prokMSA_id:046279 AJ308915 euryarchaeote clone ARS1-c62 prokMSA_id:069883 AJ308923 euryarchaeote clone ARS2-c27 prokMSA_id:048101 AJ308924 euryarchaeote clone ARS2-c34 prokMSA_id:047363 AJ308925 euryarchaeote clone ARS2-c40 prokMSA_id:035509 AJ308926 euryarchaeote clone ARS2-c41 prokMSA_id:070112 AJ308927 euryarchaeote clone ARS2-c46 prokMSA_id:029514 AJ308928 euryarchaeote clone ARS2-c51 prokMSA_id:019596 AJ308929 euryarchaeote clone ARS2-c52 prokMSA_id:050569 AJ308930 euryarchaeote clone ARS2-c56 prokMSA_id:052636 AJ308931 euryarchaeote clone ARS2-c62 prokMSA_id:043847 AJ308932 euryarchaeote clone ARS2-c69 prokMSA_id:071440 AJ308934 euryarchaeote clone ARS2-c84 prokMSA_id:047595 AJ308935 euryarchaeote clone ARS2-c97 prokMSA_id:017798 AJ308936 euryarchaeote clone ARS2-c99 prokMSA_id:070893 AJ308937 euryarchaeote clone ARS3-c6 prokMSA_id:034246 AJ308941 euryarchaeote clone ARS3-c40 prokMSA_id:024562 AJ308944 euryarchaeote clone ARS3-c51 prokMSA_id:043256 AJ308945 euryarchaeote clone ARS3-c52 prokMSA_id:033437 AJ308946 euryarchaeote clone ARS3-c53 prokMSA_id:049030 AJ308947 euryarchaeote clone ARS3-c56 prokMSA_id:052255 AJ308948 euryarchaeote clone ARS3-c62 prokMSA_id:040197 AJ308949 euryarchaeote clone ARS3-c69 prokMSA_id:042539 AJ308950 euryarchaeote clone ARS3-c72 prokMSA_id:044714 AJ308951 euryarchaeote clone ARS3-c84 prokMSA_id:039377 AJ308952 euryarchaeote clone ARS3-c91 prokMSA_id:045275 AJ308953 euryarchaeote clone ARS3-c98 prokMSA_id:039720 AJ308954 euryarchaeote clone ARS7-c1 prokMSA_id:030148 AJ308957 euryarchaeote clone ARS7-c5 prokMSA_id:032597 AJ308958 euryarchaeote clone ARS7-c7 prokMSA_id:072495 AJ308959 euryarchaeote clone ARS7-c9 prokMSA_id:023552 AJ308960 euryarchaeote clone ARS7-c11 prokMSA_id:052284 AJ308961 euryarchaeote clone ARS7-c13 prokMSA_id:037872 AJ308963 euryarchaeote clone ARS7-c18 prokMSA_id:061899 AJ310872 clone LKS23 prokMSA_id:063720 AJ412779 clone DERS1 prokMSA_id:063719 AJ412780 clone DERS2 prokMSA_id:063721 AJ412781 clone DERS3 prokMSA_id:063718 AJ412788 clone DERS10 prokMSA_id:063716 AJ412790 clone DERS12 prokMSA_id:063717 AJ412791 clone DERS13 prokMSA_id:063711 AJ412793 clone DERS15 prokMSA_id:000198 M36508 Methanobacterium formicicum DSM 1312. prokMSA_id:000177 M59124 Methanobacterium bryantii str. M.o.H. DSM 863 . prokMSA_id:000138 U41095 Methanobrevibacter cuticularis str. RFM-1 DSM 11139 . prokMSA_id:000077 U55233 Methanobrevibacter smithii str. PS DSM 861 . prokMSA_id:000122 U55234 Methanobrevibacter smithii str. ALI. prokMSA_id:000123 U55235 Methanobrevibacter smithii str. B181 DSM 11975. prokMSA_id:000086 U55237 Methanobrevibacter sp. str. GS DSM 11979. prokMSA_id:000125 U55238 Methanobrevibacter sp. str. HO DSM 11977. prokMSA_id:000126 U55239 Methanobrevibacter sp. str. PG DSM 11978. prokMSA_id:000128 U55241 Methanobrevibacter sp. str. RT. prokMSA_id:000150 U62533 Methanobrevibacter curvatus str. RFM-2 DSM 11111 . prokMSA_id:000203 U81775 clone vadinDC06. prokMSA_id:000139 U82322 Methanobrevibacter filiformis str. RFM-3 DSM 11501 . prokMSA_id:000133 X99044 Methanobacterium subterraneum str. A8p DSM 11074 . prokMSA_id:000136 X99045 Methanobacterium subterraneum str. C2BIS DSM 11075. prokMSA_id:000214 X99137 Methanobacterium sp. str. BRM12. prokMSA_id:000185 Y15385 clone ABS1. prokMSA_id:000186 Y15388 clone ABS7. prokMSA_id:000187 Y15390 clone ABS10. prokMSA_id:000188 Y15399 clone A5.1-B. prokMSA_id:000184 Y15401 Methanobacterium sp. str. VeH52. prokMSA_id:000179 Y18073 Methanobacterium sp. str. Bab-1. 1.1.2.2.1.010 OTU 1 seq prokMSA_id:000075 Z29436 Methanobacterium formicicum DSM 3636. 1.1.2.2.1.015 OTU 14 seqs prokMSA_id:000062 AB022186 Methanosphaera R6. prokMSA_id:000074 AB026172 clone MEm3. prokMSA_id:000063 AF029195 Methanosphaera methanogen ARC21. prokMSA_id:000064 AF029196 Methanosphaera methanogen ARC29. prokMSA_id:000065 AF029197 Methanosphaera methanogen ARC8. prokMSA_id:000066 AF029198 Methanosphaera methanogen ARC14. prokMSA_id:000067 AF029199 Methanosphaera methanogen ARC30. prokMSA_id:000068 AF029200 Methanosphaera methanogen ARC39. prokMSA_id:000069 AF029201 Methanosphaera methanogen ARC43. prokMSA_id:000070 AF029202 Methanosphaera methanogen ARC17. prokMSA_id:000071 AF029203 Methanosphaera methanogen ARC18. prokMSA_id:000072 AF029204 Methanosphaera methanogen ARC49. prokMSA_id:000073 AF029205 Methanosphaera methanogen ARC62. prokMSA_id:000057 M59139 Methanosphaera stadtmanae str. MCB-3 DSM 3091 . 1.1.2.2.1.016 OTU 1 seq prokMSA_id:000059 AF004346 clone BBA9. 1.1.2.2.1.017 OTU 10 seqs prokMSA_id:000058 AF134390 clone TA1f2. prokMSA_id:037573 AF142981 BURTON2_A prokMSA_id:045897 AF142982 BURTON20_A prokMSA_id:059086 AJ294852 19b-1 clone 19b-1 prokMSA_id:059085 AJ294853 19b-2 clone 19b-2 prokMSA_id:058991 AJ294857 19b-9 clone 19b-9 prokMSA_id:059071 AJ294870 19b-41 clone 19b-41 prokMSA_id:059057 AJ294885 19c-10 clone 19c-10 prokMSA_id:059052 AJ294888 19c-18 clone 19c-18 prokMSA_id:059050 AJ294895 19c-50 clone 19c-50 1.1.2.2.1.018 OTU 1 seq prokMSA_id:016893 AB050214 SAGMA-J 1.1.2.2.1.019 OTU 4 seqs prokMSA_id:024075 AJ347779 SA1 group euryarchaeote clone ST-3K26A prokMSA_id:052466 AJ347780 SA1 group euryarchaeote clone ST-3K1A prokMSA_id:017811 AJ347782 SA1 group euryarchaeote clone ST-12K11A prokMSA_id:032440 AJ347783 SA1 group euryarchaeote clone ST-12K28A 1.1.2.2.1.020 OTU 1 seq prokMSA_id:019871 AF290522 marine AEGEAN_62 1.1.2.2.1.021 OTU 1 seq prokMSA_id:021835 AF199379 Euryarchaeote J4.75-15 1.1.2.2.1.022 OTU 1 seq prokMSA_id:027550 AF225625 clone AS01-23 1.1.2.2.1.023 OTU 2 seqs prokMSA_id:052505 AJ296315 SM1 prokMSA_id:029032 AJ297912 SM1K20 1.1.2.2.1.024 OTU 1 seq prokMSA_id:030147 AJ308942 euryarchaeote clone ARS3-c46 1.1.2.2.1.025 OTU 2 seqs prokMSA_id:033106 AJ347784 SA1 group euryarchaeote clone ST-12K10A prokMSA_id:041854 AJ347785 SA1 group euryarchaeote clone ST-3K54A 1.1.2.2.1.026 OTU 1 seq prokMSA_id:058253 AF357889 MN16BT2-65 1.1.2.2.1.027 OTU 1 seq prokMSA_id:058251 AF357891 MN16BT2-68 1.1.2.2.1.028 OTU 1 seq prokMSA_id:058242 AF357898 MN16BT2-83 1.1.2.2.1.029 OTU 1 seq prokMSA_id:058241 AF357897 MN16BT2-76 1.1.2.2.1.030 OTU 1 seq prokMSA_id:058240 AF357896 MN16BT2-75 1.1.2.2.1.031 OTU 1 seq prokMSA_id:043427 AB050222 SAGMA-Q 1.1.2.2.1.032 OTU 1 seq prokMSA_id:044789 AF199378 Euryarchaeote J4.75-12 1.1.2.2.1.033 OTU 2 seqs prokMSA_id:045914 AF293557 euryarchaeote clone P3-Ar-10 prokMSA_id:051931 AF293568 euryarchaeote clone P3-Ar-23 1.1.2.2.1.034 OTU 1 seq prokMSA_id:048957 AB050216 SAGMA-K 1.1.2.2.1.035 OTU 1 seq prokMSA_id:061907 AJ310860 clone LKS11 1.1.2.2.1.036 OTU 1 seq prokMSA_id:061913 AJ310856 clone LKS7 1.1.2.2.1.037 OTU 1 seq prokMSA_id:063712 AJ412786 clone DERS8 1.1.2.2.1.038 OTU 1 seq prokMSA_id:064118 AF477909 clone 50-UMH 8% pond 1.1.2.2.1.039 OTU 1 seq prokMSA_id:069892 AF134388 TA1c9 1.1.2.2.1.999 poor quality 133 seqs prokMSA_id:022628 AB011295 euryarchaeote clone MUG3 prokMSA_id:000145 AB024039 Methanobrevibacter methanogenic symbiont RS208. prokMSA_id:000146 AB024040 Methanobrevibacter methanogenic symbiont RS104. prokMSA_id:000166 AB024041 Methanobrevibacter methanogenic symbiont RS404. prokMSA_id:000147 AB024042 Methanobrevibacter methanogenic symbiont RS301. prokMSA_id:017816 AB035623 sheep rumen methanogen clone 12 prokMSA_id:016947 AB035625 sheep rumen methanogen clone 20 prokMSA_id:049752 AB035626 sheep rumen methanogen clone 22 prokMSA_id:023553 AB035627 sheep rumen methanogen clone 31 prokMSA_id:020688 AB035629 sheep rumen methanogen clone 36 prokMSA_id:043842 AB035630 sheep rumen methanogen clone 38 prokMSA_id:026450 AB035631 sheep rumen methanogen clone 41 prokMSA_id:046110 AB035633 sheep rumen methanogen clone 47 prokMSA_id:027941 AB035635 sheep rumen methanogen clone 49 prokMSA_id:030804 AB035637 sheep rumen methanogen clone 55 prokMSA_id:025360 AB035638 sheep rumen methanogen clone 57 prokMSA_id:036528 AB035639 sheep rumen methanogen clone 58 prokMSA_id:032364 AB035640 sheep rumen methanogen clone 60 prokMSA_id:050824 AB035641 sheep rumen methanogen clone 9 prokMSA_id:050622 AB036318 Methanobrevibacter sp. MD101 prokMSA_id:017436 AB036319 Methanobrevibacter sp. MD102 prokMSA_id:026355 AB036320 Methanobrevibacter sp. MD103 prokMSA_id:026938 AB036321 Methanobrevibacter sp. MD104 prokMSA_id:044446 AB036322 Methanobrevibacter sp. MD105 prokMSA_id:051624 AB036327 Methanobrevibacter sp. XT106 prokMSA_id:043938 AB036328 Methanobrevibacter sp. XT108 prokMSA_id:022212 AB036329 Methanobrevibacter sp. XT109 prokMSA_id:043792 AB046183 GA54 prokMSA_id:050975 AB046192 HA08 prokMSA_id:020419 AB055991 WSB-9 prokMSA_id:075076 AB062299 methanogenic symbiont ST155 prokMSA_id:062879 AB077224 euryarchaeote clone:KuA14 prokMSA_id:000060 AF004347 clone BBA10. prokMSA_id:000061 AF004348 clone BBA12. prokMSA_id:000118 AF054208 Methanobrevibacter smithii. prokMSA_id:000204 AF093061 Methanobacterium palustre str. F DSM 3108 . prokMSA_id:000056 AF095260 Methanobacterium espanolae str. GP9 NRC 5912 . prokMSA_id:000078 AF095261 Methanobacterium ivanovii str. Ivanov OCM 140. prokMSA_id:000149 AF095263 Methanobacterium palustre str. F DSM 3108 . prokMSA_id:000083 AF095265 Methanobacterium uliginosum str. Kf1-F1. prokMSA_id:000199 AF134389 clone TA1e6. prokMSA_id:000213 AF149890 str. A2.95.53. prokMSA_id:000081 AF149892 str. A8.96.15. prokMSA_id:000082 AF149893 str. A9.96.64. prokMSA_id:051356 AF293522 euryarchaeote clone P5-Ar2-22 prokMSA_id:032838 AF293538 euryarchaeote clone P5-Ar2-11 prokMSA_id:050821 AF293540 euryarchaeote clone P5-Ar2-17 prokMSA_id:025168 AF293541 euryarchaeote clone P5-Ar2-19 prokMSA_id:028614 AF293545 euryarchaeote clone P5-Ar2-8 prokMSA_id:070028 AF314241 clone ANME 19 prokMSA_id:041187 AF339850 clone AC prokMSA_id:018544 AF339851 clone AD prokMSA_id:051198 AF355901 33-P27A98 prokMSA_id:058244 AF357895 MN16BT2-74 prokMSA_id:068287 AF361681 clone MN16BT2-66 prokMSA_id:068280 AF361690 clone MN16BT2-84 prokMSA_id:072084 AF455066 clone A1 prokMSA_id:071378 AF455068 clone A3 prokMSA_id:050254 AF473902 euryarchaeote r42K_26C prokMSA_id:064116 AF477913 clone 2-PML 8% pond prokMSA_id:068611 AF486654 clone W6-38-SC1-037 prokMSA_id:056302 AF486655 clone W6-38-SC1-038 prokMSA_id:068609 AF486657 clone W6-38-SC1-040 prokMSA_id:068610 AF486658 clone W6-38-SC1-041 prokMSA_id:068607 AF486659 clone W6-38-SC1-042 prokMSA_id:068608 AF486660 clone W6-38-SC1-043 prokMSA_id:068606 AF486662 clone W6-38-SC1-045 prokMSA_id:068605 AF486663 clone W6-38-SC1-046 prokMSA_id:068604 AF486664 clone W6-38-SC1-047 prokMSA_id:068603 AF486665 clone W6-38-SC1-048 prokMSA_id:068602 AF486666 clone W6-38-SC1-049 prokMSA_id:068600 AF486667 clone W6-38-SC1-050 prokMSA_id:068601 AF486668 clone W6-38-SC1-051 prokMSA_id:068599 AF486669 clone W6-38-SC1-052 prokMSA_id:068598 AF486670 clone W6-38-SC1-053 prokMSA_id:068597 AF486671 clone W6-38-SC1-054 prokMSA_id:068596 AF486672 clone W6-38-SC1-055 prokMSA_id:068595 AF486673 clone W6-38-SC1-056 prokMSA_id:068594 AF486674 clone W6-38-SC1-057 prokMSA_id:068588 AF486675 clone W6-38-SC1-059 prokMSA_id:066216 AF509455 Methanobacterium uliginosum clone 4a prokMSA_id:059412 AF540863 clone DP11u2 prokMSA_id:000167 AJ001709 Methanobrevibacter oralis DSM 7256. prokMSA_id:000168 AJ001710 Methanobrevibacter smithii DSM 2375. prokMSA_id:000169 AJ001711 Methanobrevibacter sp. prokMSA_id:000170 AJ132468 Methanobrevibacter sp. prokMSA_id:048503 AJ132647 methanogenic endosymbiont of Nyctotherus velox prokMSA_id:044926 AJ238131 Methanogenic endosymbiont of Nyctotherus cordiformis prokMSA_id:000205 AJ243838 Methanobrevibacter FMB1. prokMSA_id:000206 AJ243839 Methanobrevibacter FMB2. prokMSA_id:000207 AJ243840 Methanobrevibacter FMB3. prokMSA_id:000181 AJ243841 Methanobrevibacter FMBK1. prokMSA_id:000182 AJ243842 Methanobrevibacter FMBK2. prokMSA_id:000208 AJ243843 Methanobrevibacter FMBK3. prokMSA_id:000209 AJ243844 Methanobrevibacter FMBK4. prokMSA_id:000210 AJ243845 Methanobrevibacter FMBK5. prokMSA_id:000211 AJ243846 Methanobrevibacter FMBK6. prokMSA_id:000183 AJ243847 Methanobrevibacter FMBK7. prokMSA_id:025808 AJ290563 Cas18#4 prokMSA_id:020477 AJ305071 63-A10 clone 63-A10 prokMSA_id:021036 AJ305076 63-A16 clone 63-A16 prokMSA_id:042119 AJ305077 63-A17 clone 63-A17 prokMSA_id:028934 AJ305079 63-A19 clone 63-A19 prokMSA_id:048547 AJ308939 euryarchaeote clone ARS3-c18 prokMSA_id:071457 AJ308962 euryarchaeote clone ARS7-c17 prokMSA_id:052444 AY032984 ASDS3 prokMSA_id:020914 AY032989 ASDS9 prokMSA_id:037932 AY032990 ASDS10 prokMSA_id:046228 AY032991 ASDS11 prokMSA_id:047549 AY032994 ASDS16 prokMSA_id:071862 AY055769 clone Alth12 prokMSA_id:060805 AY118149 Methanobacteriales clone OR-M9 prokMSA_id:000197 D64025 symbiont of methanogen symbiont in termite gut. prokMSA_id:000195 D64026 symbiont of methanogen symbiont in termite gut. prokMSA_id:000084 D64027 symbiont of methanogen symbiont in termite gut. prokMSA_id:000194 D64028 symbiont of methanogen symbiont in termite gut. prokMSA_id:000076 D64029 symbiont of methanogen symbiont in termite gut. prokMSA_id:000132 D64030 symbiont of methanogen symbiont in termite gut. prokMSA_id:000116 D64031 symbiont of methanogen symbiont in termite gut. prokMSA_id:000196 M86386 endosymbiont of Metopus palaeformis. prokMSA_id:000085 NONE Methanobrevibacter ruminantium str. M-1 ATCC 35063 . prokMSA_id:000117 NONE Methanobrevibacter arboriphilicus str. DH1 DSM 1536. prokMSA_id:000080 U53419 Methanobacterium bryantii str. BKYH. prokMSA_id:000124 U55236 Methanobrevibacter sp. str. CW4C DSM 11995. prokMSA_id:000127 U55240 Methanobrevibacter sp. str. SH DSM 11976. prokMSA_id:000215 X99138 Methanobacterium sp. str. BRM9. prokMSA_id:000137 Y12592 Methanobacterium subterraneum str. 3067. prokMSA_id:000142 Y18731 str. 3543-10. prokMSA_id:000202 Y18732 Methanobacterium sp. str. 3544-4. prokMSA_id:000143 Y18733 str. 3544-9. prokMSA_id:000135 Y18734 Methanobacterium sp. str. 5544-3. prokMSA_id:000144 Y18735 str. 6132-1. prokMSA_id:000178 Y18736 Methanobacterium bryantii str. 6544-9. 1.1.2.2.2 MB.THERMOAUTOTROPHICUM_SUBGROUP 124 seqs 1.1.2.2.2.001 OTU 25 seqs prokMSA_id:000250 AB011331 clone TUG3. prokMSA_id:000233 AB020530 Methanobacterium thermoautotrophicum str. KHT-2. prokMSA_id:067147 AB084240 clone:LCA prokMSA_id:067146 AB084241 clone:LCB prokMSA_id:000238 AE000666 Methanobacterium thermoautotrophicum str. delta H. prokMSA_id:000242 AE000666 Methanobacterium thermoautotrophicum str. delta H. prokMSA_id:044111 AE000930 Methanobacterium thermoautotrophicum from bases 1592014 to 1607566 section 136 of 148 of the complete genome prokMSA_id:045830 AE000940 Methanobacterium thermoautotrophicum from bases 1709212 to 1724499 section 146 of 148 of the complete genome prokMSA_id:071339 AF220342 Enrichment culture E21A2 prokMSA_id:049751 NC_000916 Methanobacterium thermoautotrophicum str. Delta H complete genome prokMSA_id:000223 X15364 Methanobacterium thermoautotrophicum str. Marburg. prokMSA_id:000234 X68711 Methanobacterium thermoautotrophicum str. THF. prokMSA_id:000241 X68712 Methanobacterium thermoautotrophicum str. Z-245 DSM 3720. prokMSA_id:000251 X68713 Methanobacterium thermoautotrophicum str. FTF. prokMSA_id:000226 X68714 Methanobacterium thermoautotrophicum str. FF1. prokMSA_id:000221 X68715 Methanobacterium thermoautotrophicum str. FF3. prokMSA_id:000219 X68716 Methanobacterium thermoautotrophicum str. CSM3. prokMSA_id:000222 X68717 Methanobacterium thermoautotrophicum str. CB12 OCM 36. prokMSA_id:000235 X68719 Methanobacterium thermoautotrophicum str. HN4. prokMSA_id:000239 X68720 Methanobacterium thermoautotrophicum str. delta H. prokMSA_id:000217 X89406 Methanobacterium wolfei. prokMSA_id:000236 X99046 Methanothermobacter defluvii str. ADZ VKM B-1962. prokMSA_id:000225 X99047 Methanothermobacter thermoflex str. IDZ VKM B-1963. prokMSA_id:000216 X99048 Methanothermobacter thermophilus str. M VKM B-1786. prokMSA_id:000227 Z37156 Methanobacterium thermoautotrophicum str. ZH3 DSM 9446. 1.1.2.2.2.002 OTU 2 seqs prokMSA_id:000249 AB019754 clone pMC1A4. prokMSA_id:072731 AF201361 euryarchaeote isolate DOURO7 1.1.2.2.2.003 OTU 4 seqs prokMSA_id:000245 AF119124 unnamed organism. prokMSA_id:000248 AF119140 unnamed organism. prokMSA_id:056767 AY165992 clone FZ1aA168 prokMSA_id:056753 AY166001 clone FZ2aA62 1.1.2.2.2.004 OTU 6 seqs prokMSA_id:058504 AB072723 clone:pHAuA-5 prokMSA_id:000237 AF119128 unnamed organism. prokMSA_id:000246 AF119132 unnamed organism. prokMSA_id:000247 AF119133 unnamed organism. prokMSA_id:054762 AF424522 crenarchaeote MERTZ_0CM_79 prokMSA_id:056664 AY133348 clone OB3_33 1.1.2.2.2.005 OTU 3 seqs prokMSA_id:035808 AF134381 BA1a2 prokMSA_id:020341 AF134386 TA1a6 prokMSA_id:000243 AF134387 clone TA1a9. 1.1.2.2.2.006 OTU 3 seqs prokMSA_id:000230 AJ131264 clone VAL2. prokMSA_id:000231 AJ131272 clone VAL40. prokMSA_id:000232 AJ131274 clone VAL28. 1.1.2.2.2.007 OTU 4 seqs prokMSA_id:048616 AF134383 BA2e8 prokMSA_id:018834 AF134385 TA1b12 prokMSA_id:073864 AF134391 TA2e12 prokMSA_id:053542 AY053467 AT425_ArB7 1.1.2.2.2.008 OTU 1 seq prokMSA_id:036790 AF134382 BA1b1 1.1.2.2.2.009 OTU 1 seq prokMSA_id:058252 AF357890 MN16BT2-67 1.1.2.2.2.010 OTU 1 seq prokMSA_id:058249 AF357892 MN16BT2-69 1.1.2.2.2.011 OTU 1 seq prokMSA_id:058246 AF357894 MN16BT2-72 1.1.2.2.2.012 OTU 1 seq prokMSA_id:056092 AY166002 clone FZ2aA64 1.1.2.2.2.013 OTU 8 seqs prokMSA_id:056781 AY165980 clone FZ1aA12 prokMSA_id:056769 AY165989 clone FZ1aA151 prokMSA_id:056762 AY165994 clone FZ1aA231 prokMSA_id:056757 AY166000 clone FZ2aA60 prokMSA_id:056743 AY166011 clone FZ2bA36 prokMSA_id:056740 AY166014 clone FZ2bA46 prokMSA_id:056739 AY166015 clone FZ2bA48 prokMSA_id:056744 AY166028 clone FZ2bA167 1.1.2.2.2.014 OTU 1 seq prokMSA_id:056773 AY165982 clone FZ1aA21 1.1.2.2.2.015 OTU 1 seq prokMSA_id:056768 AY165983 clone FZ1aA51 1.1.2.2.2.016 OTU 1 seq prokMSA_id:056756 AY166003 clone FZ2aA5 1.1.2.2.2.017 OTU 1 seq prokMSA_id:056733 AY166021 clone FZ2bA106 1.1.2.2.2.018 OTU 1 seq prokMSA_id:061914 AJ310857 clone LKS8 1.1.2.2.2.019 OTU 1 seq prokMSA_id:063129 AY093448 clone MA-A1-3 1.1.2.2.2.020 OTU 1 seq prokMSA_id:068283 AF361686 clone MN16BT2-79 1.1.2.2.2.021 OTU 1 seq prokMSA_id:068285 AF361684 clone MN16BT2-77 1.1.2.2.2.022 OTU 1 seq prokMSA_id:070928 AF220339 Enrichment culture E21A1 1.1.2.2.2.999 poor quality 55 seqs prokMSA_id:000228 AF095262 Methanobacterium thermoautotrophicum str. Marburg. prokMSA_id:000220 AF095264 Methanobacterium thermaggregans OCM 141 . prokMSA_id:000244 AF134380 clone BA1a1. prokMSA_id:000224 AF134392 clone BA2F4fin. prokMSA_id:025661 AF193559 n41r prokMSA_id:071512 AF314245 clone ANME 15 prokMSA_id:073808 AF314246 clone ANME 14 prokMSA_id:072432 AF314247 clone ANME 11 prokMSA_id:058245 AF357893 MN16BT2-70 prokMSA_id:068286 AF361683 clone MN16BT2-73 prokMSA_id:068284 AF361685 clone MN16BT2-78 prokMSA_id:068282 AF361687 clone MN16BT2-80 prokMSA_id:068278 AF361688 clone MN16BT2-81 prokMSA_id:068281 AF361689 clone MN16BT2-82 prokMSA_id:068270 AF361694 clone MN13BT4-101 prokMSA_id:031348 AF376790 isolate MUAHR 3 prokMSA_id:022991 AF376792 isolate MUAHR 5 prokMSA_id:069946 AF412944 crenarchaeote clone BScra3 prokMSA_id:016679 AF424524 crenarchaeote MERTZ_2CM_365 prokMSA_id:064114 AF477914 clone 3-PML 8% pond prokMSA_id:059413 AF540858 clone DP10u34 prokMSA_id:059407 AF540866 clone ME10-2 prokMSA_id:059410 AF540867 clone ME141 prokMSA_id:061918 AJ310851 clone LKS2 prokMSA_id:059834 AY133350 clone OB3_60b prokMSA_id:056783 AY165965 clone FZ1aA255 prokMSA_id:056785 AY165966 clone FZ1aA161 prokMSA_id:056786 AY165967 clone FZ1aA165 prokMSA_id:056784 AY165968 clone FZ1aA162 prokMSA_id:056787 AY165969 clone FZ1aA171 prokMSA_id:056782 AY165970 clone FZ1aA11 prokMSA_id:056778 AY165971 clone FZ1aA153 prokMSA_id:056780 AY165972 clone FZ1aA63 prokMSA_id:056775 AY165974 clone FZ2bA57 prokMSA_id:056776 AY165975 clone FZ2bA194 prokMSA_id:056596 AY165976 clone FZ2bA83 prokMSA_id:056777 AY165977 clone FZ2bA104 prokMSA_id:056772 AY165979 clone FZ1aA1 prokMSA_id:055972 AY165984 clone FZ1aA53 prokMSA_id:056765 AY165985 clone FZ1aA55 prokMSA_id:056761 AY165986 clone FZ1aA56 prokMSA_id:056763 AY165987 clone FZ1aA58 prokMSA_id:056760 AY165988 clone FZ1aA59 prokMSA_id:056764 AY165991 clone FZ1aA167 prokMSA_id:056759 AY165993 clone FZ1aA169 prokMSA_id:056755 AY165996 clone FZ2aA31 prokMSA_id:056754 AY165997 clone FZ2aA4 prokMSA_id:056751 AY166005 clone FZ2aA35 prokMSA_id:056736 AY166017 clone FZ2bA59 prokMSA_id:056732 AY166022 clone FZ2bA107 prokMSA_id:056731 AY166023 clone FZ2bA111 prokMSA_id:055226 AY166033 clone FZ1aA166 prokMSA_id:000229 NONE Methanobacterium thermoautotrophicum str. CB12 ATCC 43574. prokMSA_id:000218 X66789 Methanobacterium thermoautotrophicum str. delta H = . prokMSA_id:000240 X68718 Methanobacterium thermoautotrophicum str. SF-4. 1.1.3 METHANOMICROBACTERIA_AND_RELATIVES 1959 seqs 1.1.3.1 METHANOMICROBIALES 362 seqs 1.1.3.1.1 MCU.BOURGENSE_SUBGROUP 259 seqs 1.1.3.1.1.001 OTU 1 seq prokMSA_id:000314 AF107105 Methanoculleus MAB3 str. MAB3. 1.1.3.1.1.002 OTU 1 seq prokMSA_id:000313 AF107104 Methanoculleus MAB2 str. MAB2. 1.1.3.1.1.003 OTU 1 seq prokMSA_id:000312 AF107103 Methanoculleus MAB1 str. MAB1. 1.1.3.1.1.005 OTU 9 seqs prokMSA_id:035525 AF225594 clone AS00-25 prokMSA_id:045090 AF225601 clone AS00-33 prokMSA_id:051043 AF225635 clone AS08-03 prokMSA_id:042354 AF225679 clone AS17-18 prokMSA_id:000307 AJ236511 clone S15-30. prokMSA_id:036652 AJ244277 anaerobic methanogenic ET1-1 prokMSA_id:028111 AY063608 clone RST-13 prokMSA_id:000284 Y15395 clone ABS20. prokMSA_id:000285 Y15397 clone ABS22. 1.1.3.1.1.007 OTU 4 seqs prokMSA_id:000305 AB019757 clone pIVWA104. prokMSA_id:065141 AY095663 OS2K-13 prokMSA_id:043058 U86502 marine pB1-149 prokMSA_id:050469 U86508 marine pB1-41 1.1.3.1.1.008 OTU 1 seq prokMSA_id:000303 AF126846 clone SYA-45. 1.1.3.1.1.010 OTU 1 seq prokMSA_id:000300 AF126863 clone SYA-133. 1.1.3.1.1.011 OTU 7 seqs prokMSA_id:000298 AB008853 unnamed organism. prokMSA_id:000299 AF033672 Methanocalculus halotolerans SEBR 4845. prokMSA_id:042125 AF172443 Methanocalculus taiwanense strain P2F9704a prokMSA_id:041198 AF321115 Methanocalculus sp. K1F9705c prokMSA_id:019259 AF347025 Methanocalculus sp. K1F9705b prokMSA_id:045899 AF411470 Methanocalculus halotolerans strain P2F9705 prokMSA_id:074785 AY026256 Methanocalculus sp. O1F9702c 1.1.3.1.1.021 OTU 39 seqs prokMSA_id:026720 AB038795 Methanoculleus chikugoensis strain:MG62 prokMSA_id:069300 AB065298 Methanoculleus oldenburgensis prokMSA_id:067141 AB084243 clone:LCD prokMSA_id:000309 AF015979 clone 2C87. prokMSA_id:000310 AF015985 clone 2MT196. prokMSA_id:000295 AF028693 Methanoculleus marisnigri str. CoCam. prokMSA_id:000268 AF050615 clone WCHA2-08. prokMSA_id:000311 AF157518 unnamed organism. prokMSA_id:000296 AF157519 unnamed organism. prokMSA_id:072477 AF220340 Enrichment culture E21B2 prokMSA_id:039151 AF220343 Enrichment culture E31B1 prokMSA_id:070145 AF531178 Methanoculleus submarinus prokMSA_id:000297 AJ133793 Methanoculleus sp. prokMSA_id:026465 AJ244287 anaerobic methanogenic E15-1 prokMSA_id:033933 AJ244289 anaerobic methanogenic E15-3 prokMSA_id:044296 AJ244296 anaerobic methanogenic E15-10 prokMSA_id:029601 AJ244301 anaerobic methanogenic E30-5 prokMSA_id:063729 AJ412773 clone DERR10 prokMSA_id:055959 AJ412775 clone DERR12 prokMSA_id:063723 AJ412782 clone DERS4 prokMSA_id:063713 AJ412785 clone DERS7 prokMSA_id:073658 AJ493093 clone LK15 prokMSA_id:069637 AJ493094 clone LK8 prokMSA_id:069714 AJ493095 clone LK13 prokMSA_id:073005 AJ493096 clone LK45 prokMSA_id:069442 AJ493108 clone LK23 prokMSA_id:044094 AY062218 clone GW60-13-1 prokMSA_id:048306 AY062219 clone GW60-13-24 prokMSA_id:016936 AY062220 clone GW60-13-38 prokMSA_id:045011 AY062221 clone GW60-13-3 prokMSA_id:044000 AY062222 clone GW60-13-4 prokMSA_id:048761 AY062225 clone GW70-10-10 prokMSA_id:046958 AY062227 clone GW70-10-16 prokMSA_id:046448 AY062228 clone GW70-10-18 prokMSA_id:044379 AY062230 clone GW70-10-35 prokMSA_id:030915 AY062235 clone GW70-20-6 prokMSA_id:000304 M59129 Methanoculleus thermophilicus str. TCI DSM 3915. prokMSA_id:000294 M59134 Methanoculleus marisnigri str. JR1 ATCC 35101 . prokMSA_id:000267 Y16382 Methanoculleus palmolei str. INSLUZ DSM 4273 . 1.1.3.1.1.023 OTU 2 seqs prokMSA_id:000261 AF142979 clone ACE4_A. prokMSA_id:000258 AF142980 clone BURTON24_A. 1.1.3.1.1.025 OTU 2 seqs prokMSA_id:050770 AB034182 rumen methanogen Hole9 prokMSA_id:000257 M59142 Methanomicrobium mobile str. BP DSM 1539 . 1.1.3.1.1.026 OTU 1 seq prokMSA_id:000256 Z29435 Methanoplanus endosymbiosus str. MC1 GDVogels DSM 3599 . 1.1.3.1.1.029 OTU 5 seqs prokMSA_id:000253 AF015971 clone 2C25. prokMSA_id:000254 AF015978 clone 2C84. prokMSA_id:000255 AF015992 clone 2MT8. prokMSA_id:059075 AJ294862 19b-26 clone 19b-26 prokMSA_id:058995 AJ299201 20c-52 clone 20c-52 1.1.3.1.1.030 OTU 1 seq prokMSA_id:000252 M59143 Methanoplanus limicola str. M3 DSM 2279 . 1.1.3.1.1.031 OTU 2 seqs prokMSA_id:062883 AB077218 Methanomicrobiales clone:KuA8 prokMSA_id:018762 AF447154 clone TDC-AR4 1.1.3.1.1.032 OTU 1 seq prokMSA_id:020227 AY016005 marine euryarchaeote dh148-W17 1.1.3.1.1.033 OTU 1 seq prokMSA_id:022583 AF225642 clone AS08-10 1.1.3.1.1.034 OTU 1 seq prokMSA_id:023669 AF225674 clone AS17-12 1.1.3.1.1.035 OTU 11 seqs prokMSA_id:000266 AF009219 Methanogenium frigidum OCM 469. prokMSA_id:026952 AF015968 2C130 prokMSA_id:024448 AF015969 2C169 prokMSA_id:000263 AF015983 clone 2MT120. prokMSA_id:000264 AF142976 Methanogenium ACE1_A. prokMSA_id:072379 AF220336 O23D1 prokMSA_id:031414 AF220337 O23E2 prokMSA_id:049083 AF220338 O23C7 prokMSA_id:039372 AF419645 CS_R002 prokMSA_id:000265 M59131 Methanogenium organophilum str. CV DSM 3596 . prokMSA_id:000260 U76631 Methanoplanus petrolearius SEBR 4847 . 1.1.3.1.1.036 OTU 1 seq prokMSA_id:026253 AY053471 AT425_ArD10 1.1.3.1.1.038 OTU 4 seqs prokMSA_id:000306 AF122002 str. DCM875. prokMSA_id:028555 AF223133 euryarchaeote AT-200_29 prokMSA_id:045211 AF223142 euryarchaeote ME-450_38 prokMSA_id:050813 AF290531 marine AEGEAN_60 1.1.3.1.1.041 OTU 1 seq prokMSA_id:030524 U86455 marine pN1-2 1.1.3.1.1.042 OTU 1 seq prokMSA_id:034486 AJ131275 euryarchaeote VAL147 clone VAL147 1.1.3.1.1.043 OTU 1 seq prokMSA_id:037655 AF015970 2C174 1.1.3.1.1.044 OTU 1 seq prokMSA_id:051522 AF229776 TA03 1.1.3.1.1.045 OTU 1 seq prokMSA_id:055286 AJ310866 clone LKS17 1.1.3.1.1.046 OTU 1 seq prokMSA_id:061903 AJ310864 clone LKS15 1.1.3.1.1.047 OTU 1 seq prokMSA_id:061908 AJ310867 clone LKS18 1.1.3.1.1.049 OTU 63 seqs prokMSA_id:062887 AB077222 Methanomicrobiales clone:KuA12 prokMSA_id:000269 AF050617 clone WCHD3-07. prokMSA_id:000271 AF056362 unnamed organism. prokMSA_id:000293 AF126835 clone SYA-1. prokMSA_id:000291 AF126844 clone SYA-32. prokMSA_id:000290 AF126845 clone SYA-39. prokMSA_id:000302 AF126851 clone SYA-75. prokMSA_id:000289 AF126853 clone SYA-78. prokMSA_id:000288 AF126854 clone SYA-80. prokMSA_id:000287 AF126855 clone SYA-81. prokMSA_id:000301 AF126857 clone SYA-106. prokMSA_id:000286 AF126861 clone SYA-127. prokMSA_id:030145 AF229775 TA02 prokMSA_id:073019 AF374276 euryarchaeote EHB112 prokMSA_id:050440 AF423187 Toluene-degrading methanogenic consortium M1 prokMSA_id:028545 AF424766 19-1 prokMSA_id:037119 AF424773 57-1 prokMSA_id:070790 AF481341 clone Fuku06 prokMSA_id:072498 AF481342 clone Fuku07 prokMSA_id:073515 AF481343 clone Fuku08 prokMSA_id:048602 AJ131263 euryarchaeote VAL1 clone VAL1 prokMSA_id:023580 AJ131268 euryarchaeote VAL47 clone VAL47 prokMSA_id:000280 AJ131269 clone VAL78. prokMSA_id:000281 AJ131273 clone VAL9. prokMSA_id:047590 AJ132648 methanogenic endosymbiont of Caenomorpha-like sp. 1 prokMSA_id:042593 AJ132649 methanogenic endosymbiont of Caenomorpha-like sp. 4 prokMSA_id:046800 AJ132650 methanogenic endosymbiont of Caenomorpha-like sp. 8 prokMSA_id:026923 AJ132651 methanogenic endosymbiont of Caenomorpha sp. 10 prokMSA_id:074530 AJ132652 methanogenic endosymbiont of Caenomorpha sp. 2 prokMSA_id:044469 AJ132653 methanogenic endosymbiont of Caenomorpha sp. prokMSA_id:042084 AJ132654 methanogenic endosymbiont of Brachonella sp. prokMSA_id:049400 AJ132655 methanogenic endosymbiont of Brachonella sp. prokMSA_id:000282 AJ249243 clone R8. prokMSA_id:000283 AJ249244 clone R9. prokMSA_id:061919 AJ310850 clone LKS1 prokMSA_id:061915 AJ310852 clone LKS3 prokMSA_id:061917 AJ310853 clone LKS4 prokMSA_id:061916 AJ310854 clone LKS5 prokMSA_id:061910 AJ310859 clone LKS10 prokMSA_id:061909 AJ310861 clone LKS12 prokMSA_id:061905 AJ310862 clone LKS13 prokMSA_id:055446 AJ310863 clone LKS14 prokMSA_id:056195 AJ310865 clone LKS16 prokMSA_id:061904 AJ310868 clone LKS19 prokMSA_id:061906 AJ310869 clone LKS20 prokMSA_id:061902 AJ310870 clone LKS21 prokMSA_id:061901 AJ310871 clone LKS22 prokMSA_id:061897 AJ310874 clone LKS25 prokMSA_id:061895 AJ310875 clone LKS26 prokMSA_id:061893 AJ310876 clone LKS27 prokMSA_id:061894 AJ310877 clone LKS28 prokMSA_id:061892 AJ310878 clone LKS29 prokMSA_id:061889 AJ310879 clone LKS30 prokMSA_id:066889 AJ312019 clone SHC-88 prokMSA_id:064338 AY102915 clone BCM3S-8A prokMSA_id:064339 AY102916 clone BCM3S-14A prokMSA_id:000273 Y18080 clone Rot1. prokMSA_id:000274 Y18081 clone Rot2. prokMSA_id:000275 Y18084 clone Rot6. prokMSA_id:000276 Y18085 clone Rot7. prokMSA_id:000277 Y18088 clone Rot12. prokMSA_id:000278 Y18093 clone Rot24. prokMSA_id:000279 Y18095 clone Rot26. 1.1.3.1.1.050 OTU 1 seq prokMSA_id:061911 AJ310858 clone LKS9 1.1.3.1.1.051 OTU 1 seq prokMSA_id:062884 AB077220 Methanomicrobiales clone:KuA10 1.1.3.1.1.052 OTU 2 seqs prokMSA_id:063724 AJ412783 clone DERS5 prokMSA_id:063714 AJ412784 clone DERS6 1.1.3.1.1.999 poor quality 89 seqs prokMSA_id:019264 AB035624 sheep rumen methanogen clone 19 prokMSA_id:031665 AB035628 sheep rumen methanogen clone 34 prokMSA_id:044117 AB035632 sheep rumen methanogen clone 46 prokMSA_id:028725 AB035634 sheep rumen methanogen clone 48 prokMSA_id:017305 AB035636 sheep rumen methanogen clone 52 prokMSA_id:028734 AB046190 HA05 prokMSA_id:022300 AB046199 HA55 prokMSA_id:039780 AB055985 WSB-3 prokMSA_id:026855 AB055987 WSB-5 prokMSA_id:032097 AB055994 WSB-12 prokMSA_id:036352 AB055995 WSB-13 prokMSA_id:016283 AB055998 WSB-16 prokMSA_id:029847 AB056004 AM-1 prokMSA_id:016528 AB056013 AM-10 prokMSA_id:025931 AB056016 AM-13 prokMSA_id:030818 AB056017 AM-14 prokMSA_id:040310 AB056022 AM-19 prokMSA_id:032200 AB056033 OS-8 prokMSA_id:033666 AB056034 OS-9 prokMSA_id:032746 AB056037 OS-12 prokMSA_id:039739 AB056038 OS-13 prokMSA_id:022316 AB056040 OS-15 prokMSA_id:030469 AB056041 OS-16 prokMSA_id:027240 AB056048 OS-23 prokMSA_id:052876 AB056049 OS-24 prokMSA_id:055395 AB077219 Methanoculleus sp. clone:KuA9 prokMSA_id:000270 AF056360 unnamed organism. prokMSA_id:000272 AF056368 unnamed organism. prokMSA_id:000317 AF095269 Methanoculleus bourgensis str. MS2. prokMSA_id:000308 AF095270 Methanoculleus olentangyi str. RC/ER OCM 52 . prokMSA_id:000315 AF107106 Methanoculleus BA1 str. BA1. prokMSA_id:000292 AF126836 clone SYA-5. prokMSA_id:027204 AF355815 33-P73A98 prokMSA_id:070713 AF374275 euryarchaeote EHB93 prokMSA_id:072572 AF374277 euryarchaeote EHB158 prokMSA_id:074196 AF374278 euryarchaeote EHB154 prokMSA_id:072381 AF374279 euryarchaeote EHB156 prokMSA_id:028508 AF376797 isolate MUAHR 10 prokMSA_id:029292 AF473903 euryarchaeote r-5_06C prokMSA_id:071615 AF481345 clone Fuku10 prokMSA_id:066225 AF509437 Methanospirillum hungatei clone 10e prokMSA_id:056516 AF509439 Methanoculleus palmolei clone 12a prokMSA_id:066222 AF509443 Methanoculleus palmolei clone 19f prokMSA_id:066220 AF509444 Methanoculleus palmolei clone 1a prokMSA_id:066218 AF509445 Methanosaeta concilii clone 23g prokMSA_id:055255 AF509447 Methanoculleus palmolei clone 2a prokMSA_id:066213 AF509453 Methanoculleus palmolei clone 44i prokMSA_id:066215 AF509454 Methanoculleus palmolei clone 45i prokMSA_id:066206 AF509456 Methanocorpusculum bavaricum clone 50i prokMSA_id:066210 AF509457 Methanocorpusculum bavaricum clone 51i prokMSA_id:066209 AF509458 Methanocorpusculum bavaricum clone 52j prokMSA_id:066207 AF509459 Methanocorpusculum bavaricum clone 53j prokMSA_id:066208 AF509461 Methanocorpusculum bavaricum clone 22 prokMSA_id:066204 AF509462 Methanocorpusculum bavaricum clone 23 prokMSA_id:056200 AF509463 Methanocorpusculum bavaricum clone 24 prokMSA_id:064546 AF515502 euryarchaeote clone PPArcW2 prokMSA_id:071974 AJ239988 euryarchaeote strain DGGE band CIARC-1 prokMSA_id:072574 AJ240006 euryarchaeote strain DGGE band VIARC-3 prokMSA_id:017593 AJ287716 euryarchaeote a60ev prokMSA_id:036225 AJ287717 euryarchaeote a118ev prokMSA_id:044305 AJ305064 63-A3 clone 63-A3 prokMSA_id:072063 AJ306409 methanogen CIBARC-1 DGGE band CIBARC-1 prokMSA_id:073773 AJ306411 methanogen CRARC-3 DGGE band CRARC-3 prokMSA_id:071746 AJ306414 methanogen VIARC-0 DGGE band VIARC-0 prokMSA_id:068420 AJ306415 methanogen VIARC-4 DGGE band VIARC-4 prokMSA_id:073907 AJ308908 euryarchaeote clone ARS1-c13 prokMSA_id:066896 AJ312014 clone SHB-200 prokMSA_id:069616 AJ493097 clone LK9 prokMSA_id:071365 AJ493098 clone LK4 prokMSA_id:069299 AJ493099 clone LK16 prokMSA_id:069519 AJ493100 clone LK47 prokMSA_id:069413 AJ493101 clone LK55 prokMSA_id:070246 AJ493102 clone LK14 prokMSA_id:058537 AJ493103 clone LK26 prokMSA_id:058538 AJ493104 clone LK50 prokMSA_id:058529 AJ493105 clone LK6 prokMSA_id:058535 AJ493106 clone LK30 prokMSA_id:058533 AJ493107 clone LK49 prokMSA_id:058534 AJ493109 clone LK31 prokMSA_id:058532 AJ493110 clone LK28 prokMSA_id:058526 AJ493119 clone LK38 prokMSA_id:074120 AY032988 ASDS8 prokMSA_id:072843 AY055766 clone Gain7 prokMSA_id:060808 AY118147 Methanomicrobiales clone OR-M7 prokMSA_id:000262 M59130 Methanogenium cariaci str. JR1 ATCC 35093 . prokMSA_id:000316 NONE Methanoculleus bourgense str. MS2 ATCC 43281 . prokMSA_id:000318 NONE Methanoculleus olentangyi str. RC/ER ATCC 35293 . prokMSA_id:071210 U78205 euryarchaeote obtained from Santa Barbara Channel prokMSA_id:000259 X99139 Methanobacterium sp. str. BRM16. 1.1.3.1.2 MF.TATIONIS_SUBGROUP 22 seqs 1.1.3.1.2.001 OTU 2 seqs prokMSA_id:000331 AF126849 clone SYA-70. prokMSA_id:000330 AF126860 clone SYA-125. 1.1.3.1.2.002 OTU 4 seqs prokMSA_id:022804 AF262035 Methanofollis sp. N2F9704 prokMSA_id:043996 AY062223 clone GW60-13-42 prokMSA_id:000328 Y16428 Methanofollis liminatans str. GKZPZ DSM 4140 . prokMSA_id:000329 Y16429 Methanofollis liminatans DSM 10196. 1.1.3.1.2.003 OTU 1 seq prokMSA_id:000320 Z29437 symbiont of Plagiopyla nasuta. 1.1.3.1.2.004 OTU 3 seqs prokMSA_id:062885 AB077221 Methanomicrobiales clone:KuA11 prokMSA_id:077401 AF524852 K-4a2 prokMSA_id:000319 L48407 Methanospirillum sp. str. R10. 1.1.3.1.2.999 poor quality 12 seqs prokMSA_id:000323 AF045177 clone Winarc150. prokMSA_id:000324 AF045178 clone Winarc31. prokMSA_id:000325 AF045179 clone Winarc41. prokMSA_id:000326 AF045180 clone Winarc45. prokMSA_id:000327 AF045181 clone Winarc7. prokMSA_id:000334 AF095271 Methanofollis liminatans str. GKZPZ DSM 4140 . prokMSA_id:000333 AF095272 Methanofollis tationis DSM 2702 . prokMSA_id:000332 AF126840 clone SYA-13. prokMSA_id:056365 AF509438 Methanoculleus palmolei clone 11f prokMSA_id:073834 AJ296596 DGGE band PSARC-1 prokMSA_id:000321 L09056 clone CY 24. prokMSA_id:000322 NONE Methanofollis tationis DSM 2702 . 1.1.3.1.3 MSP.HUNGATEI_SUBGROUP 52 seqs 1.1.3.1.3.001 OTU 1 seq prokMSA_id:000345 AF126847 clone SYA-50. 1.1.3.1.3.002 OTU 1 seq prokMSA_id:000344 AF126852 clone SYA-77. 1.1.3.1.3.004 OTU 3 seqs prokMSA_id:000340 AB009823 clone MNt1. prokMSA_id:000341 AB009824 clone MNt2. prokMSA_id:000342 AB009825 clone MPn1. 1.1.3.1.3.005 OTU 1 seq prokMSA_id:000338 AF056366 unnamed organism. 1.1.3.1.3.007 OTU 24 seqs prokMSA_id:032520 AB050215 SAGMA-J2 prokMSA_id:030553 AB050235 SAGMA-4 prokMSA_id:027481 AB050237 SAGMA-7 prokMSA_id:044539 AB062404 Methanogen sp. TM20-1 prokMSA_id:000337 AF056361 unnamed organism. prokMSA_id:000343 AJ133792 Methanospirillum sp. prokMSA_id:043804 AJ288312 clone AC43 prokMSA_id:046784 AJ288319 clone AC91 prokMSA_id:063735 AJ412764 clone DERR1 prokMSA_id:063736 AJ412765 clone DERR2 prokMSA_id:063731 AJ412766 clone DERR3 prokMSA_id:063734 AJ412767 clone DERR4 prokMSA_id:063733 AJ412768 clone DERR5 prokMSA_id:063730 AJ412769 clone DERR6 prokMSA_id:063732 AJ412770 clone DERR7 prokMSA_id:055292 AJ412771 clone DERR8 prokMSA_id:063728 AJ412774 clone DERR11 prokMSA_id:063722 AJ412776 clone DERR13 prokMSA_id:063725 AJ412777 clone DERR14 prokMSA_id:063726 AJ412778 clone DERR15 prokMSA_id:056053 AJ412787 clone DERS9 prokMSA_id:063715 AJ412789 clone DERS11 prokMSA_id:063710 AJ412792 clone DERS14 prokMSA_id:000336 M60880 Methanospirillum hungatei str. JF1 DSM 864 . 1.1.3.1.3.008 OTU 1 seq prokMSA_id:061912 AJ310855 clone LKS6 1.1.3.1.3.009 OTU 1 seq prokMSA_id:063727 AJ412772 clone DERR9 1.1.3.1.3.999 poor quality 20 seqs prokMSA_id:076311 AB062300 methanogenic symbiont ST157 prokMSA_id:000339 AF056367 unnamed organism. prokMSA_id:031323 AF293488 euryarchaeote clone P4b-Ar-16 prokMSA_id:051769 AF293498 euryarchaeote clone P4b-Ar-29 prokMSA_id:048345 AF293501 euryarchaeote clone P4b-Ar-4 prokMSA_id:041857 AF293563 euryarchaeote clone P3-Ar-18 prokMSA_id:038668 AF293564 euryarchaeote clone P3-Ar-19 prokMSA_id:035936 AF293565 euryarchaeote clone P3-Ar-20 prokMSA_id:035732 AF293570 euryarchaeote clone P3-Ar-25 prokMSA_id:034297 AF293574 euryarchaeote clone P3-Ar-3 prokMSA_id:047731 AF293577 euryarchaeote clone P3-Ar-7 prokMSA_id:048450 AF293589 euryarchaeote clone P3-Ar-30 prokMSA_id:042023 AF376799 isolate MUAHR 12 prokMSA_id:037326 AF447153 clone TDC-AR3 prokMSA_id:066224 AF509436 Methanospirillum hungatei clone 10a prokMSA_id:058525 AJ493118 clone LK33 prokMSA_id:074271 AY055764 clone Gain3 prokMSA_id:070354 AY055768 clone Alth2 prokMSA_id:000335 L09055 clone CY 104. prokMSA_id:000346 L09059 clone CY 49. 1.1.3.1.4 MCR.PARVUM_SUBGROUP 29 seqs 1.1.3.1.4.002 OTU 3 seqs prokMSA_id:000347 M96976 symbiont of Trimyema compressa. prokMSA_id:000349 Z13957 symbiont of archaeobacterial symbiont of Metopus contortus. prokMSA_id:000348 Z16412 symbiont of archaeobacterial symbiont of Trimyema sp. 1.1.3.1.4.006 OTU 7 seqs prokMSA_id:039103 AB056679 equine intestinal clone:YT28 prokMSA_id:000357 AF157520 unnamed organism. prokMSA_id:071599 AF419634 C1_R002 prokMSA_id:066890 AJ312018 clone SHC-268 prokMSA_id:031702 AJ408266 equine intestinal archaeal sp. DL11 clone DL11 prokMSA_id:045254 AY029298 euryarchaeote Arc84 prokMSA_id:039974 AY057068 Methanocorpusculum parvum strain IF9601b 1.1.3.1.4.999 poor quality 19 seqs prokMSA_id:000351 AB024043 Methanobrevibacter methanogenic symbiont RS105. prokMSA_id:076790 AB062301 methanogenic symbiont ST131 prokMSA_id:075506 AB062302 methanogenic symbiont PA127 prokMSA_id:077051 AB062303 methanogenic symbiont ST104 prokMSA_id:076282 AB062304 methanogenic symbiont ST152 prokMSA_id:075579 AB062305 methanogenic symbiont PA123 prokMSA_id:000355 AF042197 Methanocorpusculum bavaricum str. SZSXXZ DSM 4179 . prokMSA_id:000354 AF095266 Methanocorpusculum bavaricum str. SZSXXZ DSM 4179 . prokMSA_id:000353 AF095267 Methanocorpusculum labreanum str. Z DSM 4855 . prokMSA_id:000352 AF095268 Methanocorpusculum sinense str. China Z DSM 4274 . prokMSA_id:070329 AF374274 euryarchaeote EHB214 prokMSA_id:034398 AF376791 isolate MUAHR 4 prokMSA_id:025498 AF376793 isolate MUAHR 6 prokMSA_id:058531 AJ493111 clone LK10 prokMSA_id:058530 AJ493112 clone LK35 prokMSA_id:058528 AJ493113 clone LK2 prokMSA_id:000358 L09058 clone CY 46. prokMSA_id:000356 M59147 Methanocorpusculum parvum str. XII ATCC 43721 . prokMSA_id:000350 NONE Methanocorpusculum labreanum str. Z ATCC 43576 . 1.1.3.2 METHANOSARCINALES 815 seqs 1.1.3.2.1 METHANOSARCINA_AND_RELATIVES 562 seqs 1.1.3.2.1.001 OTU 1 seq prokMSA_id:055228 AY166030 clone FZ2bA209 1.1.3.2.1.003 OTU 16 seqs prokMSA_id:000473 AB009822 clone MOf1. prokMSA_id:000474 AB009826 clone MPn4. prokMSA_id:050674 AF293490 euryarchaeote clone P4b-Ar-18 prokMSA_id:023609 AF293507 euryarchaeote clone P1-Ar-1 prokMSA_id:016838 AF293508 euryarchaeote clone P1-Ar-10 prokMSA_id:044162 AF293514 euryarchaeote clone P1-Ar-2 prokMSA_id:032888 AF293515 euryarchaeote clone P1-Ar-3 prokMSA_id:021448 AF293516 euryarchaeote clone P1-Ar-4 prokMSA_id:046877 AF293517 euryarchaeote clone P1-Ar-5 prokMSA_id:018969 AF293518 euryarchaeote clone P1-Ar-6 prokMSA_id:039139 AF293519 euryarchaeote clone P1-Ar-7 prokMSA_id:050358 AF293520 euryarchaeote clone P1-Ar-8 prokMSA_id:036045 AF293525 euryarchaeote clone P1-Ar-16 prokMSA_id:021910 AF293526 euryarchaeote clone P1-Ar-17 prokMSA_id:020977 AF293569 euryarchaeote clone P3-Ar-24 prokMSA_id:000516 AJ238002 Methanomicrococcus blatticolus str. PA. 1.1.3.2.1.004 OTU 7 seqs prokMSA_id:036837 AB034189 rumen methanogen 2 prokMSA_id:000493 AF029206 clone ARC9. prokMSA_id:000494 AF029207 clone ARC31. prokMSA_id:000495 AF029208 clone ARC45. prokMSA_id:000456 AF029209 clone ARC46. prokMSA_id:000496 AF029210 clone ARC63. prokMSA_id:000497 AF029211 clone ARC64. 1.1.3.2.1.005 OTU 33 seqs prokMSA_id:034896 AF225577 clone AS00-07 prokMSA_id:044596 AF225585 clone AS00-15 prokMSA_id:043712 AF225586 clone AS00-16 prokMSA_id:051774 AF225597 clone AS00-28 prokMSA_id:022915 AF225629 clone AS01-27 prokMSA_id:016938 AF225633 clone AS01-32 prokMSA_id:023533 AF225665 clone AS17-02 prokMSA_id:052317 AF225666 clone AS17-03 prokMSA_id:032787 AF225672 clone AS17-10 prokMSA_id:031178 AF225678 clone AS17-17 prokMSA_id:028505 AF225689 clone AS17-31 prokMSA_id:077450 AF524853 K-5a2 prokMSA_id:000445 AJ227920 clone ARR3. prokMSA_id:000483 AJ227935 clone ARR22. prokMSA_id:000414 AJ227952 clone ABS5. prokMSA_id:000488 AJ227958 clone ABS17. prokMSA_id:000458 AJ236453 clone ST1-2. prokMSA_id:000459 AJ236456 clone ST1-5. prokMSA_id:000461 AJ236470 clone ST1-19. prokMSA_id:000411 AJ236492 clone S15-11. prokMSA_id:000412 AJ236493 clone S15-12. prokMSA_id:030197 AJ244283 anaerobic methanogenic ET1-7 prokMSA_id:070318 AJ308907 euryarchaeote clone ARS1-c10 prokMSA_id:073356 AJ308909 euryarchaeote clone ARS1-c14 prokMSA_id:048134 AJ308912 euryarchaeote clone ARS1-c55 prokMSA_id:030288 AJ308917 euryarchaeote clone ARS1-c69 prokMSA_id:052075 AJ310451 RSS50-1 clone RSS50-1 prokMSA_id:034715 AJ310455 RSS50-5 clone RSS50-5 prokMSA_id:044499 AJ310456 RSS50-6 clone RSS50-6 prokMSA_id:030202 AJ310458 RSS50-8 clone RSS50-8 prokMSA_id:027587 AJ310459 RSS50-9 clone RSS50-9 prokMSA_id:031052 AJ310460 RSS50-10 clone RSS50-10 prokMSA_id:023733 AJ310461 RSS50-11 clone RSS50-11 1.1.3.2.1.009 OTU 1 seq prokMSA_id:000470 AJ236538 clone S30-29. 1.1.3.2.1.012 OTU 1 seq prokMSA_id:000443 AJ236508 clone S15-27. 1.1.3.2.1.013 OTU 1 seq prokMSA_id:000442 AF118658 clone pBRKC129. 1.1.3.2.1.014 OTU 4 seqs prokMSA_id:000441 AF118661 clone pBRKC84. prokMSA_id:000440 AF118668 clone pBRKC91. prokMSA_id:000434 AF118669 clone pBRKC134. prokMSA_id:048568 AF424531 euryarchaeote MERTZ_2CM_183 1.1.3.2.1.015 OTU 6 seqs prokMSA_id:000421 AF015977 clone 2C83. prokMSA_id:000437 AF015991 clone 2MT7. prokMSA_id:000438 AF134393 clone BA2H11fin. prokMSA_id:069934 AF354130 isolate SB-24a1B11 prokMSA_id:073952 AF354134 isolate SB-24a1F10 prokMSA_id:073445 AF354143 isolate SB-24a1A4 1.1.3.2.1.020 OTU 1 seq prokMSA_id:000429 AB019738 clone pMC2A33. 1.1.3.2.1.025 OTU 1 seq prokMSA_id:000422 Z29439 symbiont of Plagiopyla frontata. 1.1.3.2.1.027 OTU 18 seqs prokMSA_id:000432 AB015279 unnamed organism. prokMSA_id:062890 AB077216 Methanomethylovorans sp. clone:KuA6 prokMSA_id:028460 AF015972 2C30 prokMSA_id:000364 AF081943 clone NS-TS235-C290. prokMSA_id:000431 AF120163 Methanomethylovorans hollandica str. DMS1. prokMSA_id:000430 AF142978 clone ACE3_A. prokMSA_id:040857 AF354132 isolate SB-24a1C2 prokMSA_id:070903 AF354136 isolate Eel-36a2H11 prokMSA_id:030246 AF447155 clone TDC-AR5 prokMSA_id:048567 AJ276437 Methanomethylovorans victoriae strain TM prokMSA_id:048490 AJ288316 clone AC72 prokMSA_id:066897 AJ312013 clone SHB-143 prokMSA_id:076258 AY164281 Methanohalophilus sp. clone ALIA-123 prokMSA_id:075203 AY164315 Methanohalophilus sp. clone DLIA-189 prokMSA_id:075577 AY164331 Methanohalophilus sp. clone ULIA-84 prokMSA_id:000426 X65537 Methanococcoides burtonii DSM 6242 . prokMSA_id:000361 X98192 Methanococcoides euhalobius. prokMSA_id:044725 Y16946 Methanococcoides sp. strain NaT1 1.1.3.2.1.028 OTU 4 seqs prokMSA_id:051952 AF015974 2C46 prokMSA_id:026874 AF015975 2C8 prokMSA_id:018815 AF015986 2MT198 prokMSA_id:039338 AF015987 2MT22 1.1.3.2.1.029 OTU 1 seq prokMSA_id:020092 AJ310457 RSS50-7 clone RSS50-7 1.1.3.2.1.030 OTU 20 seqs prokMSA_id:070991 AF354129 isolate Eel-36a2A1 prokMSA_id:074281 AF354133 isolate Eel-36a2A5 prokMSA_id:072945 AF354139 isolate Eel-36a2E1 prokMSA_id:072394 AF354141 isolate SB-17a1B11 prokMSA_id:041219 AF354142 isolate SB-17a1D3 prokMSA_id:073069 AF419635 C1_R004 prokMSA_id:074364 AF419638 C1_R019 prokMSA_id:035354 AF419644 C1_R048 prokMSA_id:069806 AF419647 CS_R012 prokMSA_id:059083 AJ294855 19b-7 clone 19b-7 prokMSA_id:059079 AJ294860 19b-23 clone 19b-23 prokMSA_id:059077 AJ294861 19b-24 clone 19b-24 prokMSA_id:059070 AJ294868 19b-38 clone 19b-38 prokMSA_id:059068 AJ294872 19b-46 clone 19b-46 prokMSA_id:059048 AJ294892 19c-36 clone 19c-36 prokMSA_id:059046 AJ294893 19c-45 clone 19c-45 prokMSA_id:059047 AJ294894 19c-49 clone 19c-49 prokMSA_id:059039 AJ294899 19b-31 clone 19b-31 prokMSA_id:020168 AY053472 At425_ArD2 prokMSA_id:021515 AY053474 AT425_ArE12 1.1.3.2.1.031 OTU 2 seqs prokMSA_id:020184 AF293016 Green Bay ferromanganous micronodule ARB5 prokMSA_id:074581 AF293017 Green Bay ferromanganous micronodule ARC3 1.1.3.2.1.032 OTU 1 seq prokMSA_id:022543 AJ310453 RSS50-3 clone RSS50-3 1.1.3.2.1.033 OTU 1 seq prokMSA_id:024066 AJ308910 euryarchaeote clone ARS1-c52 1.1.3.2.1.034 OTU 1 seq prokMSA_id:059023 AJ299173 20b-28 clone 20b-28 1.1.3.2.1.035 OTU 2 seqs prokMSA_id:059019 AJ299176 20b-37 clone 20b-37 prokMSA_id:058997 AJ299200 20c-47 clone 20c-47 1.1.3.2.1.036 OTU 1 seq prokMSA_id:030042 AY063698 clone RS500-13 1.1.3.2.1.038 OTU 1 seq prokMSA_id:035246 AF199376 Euryarchaeote DJ3.25-13 1.1.3.2.1.040 OTU 7 seqs prokMSA_id:000428 AB019737 clone pMC2A203. prokMSA_id:000427 AF142832 clone BURTON-12. prokMSA_id:073685 AF419643 C1_R046 prokMSA_id:059081 AJ294858 19b-16 clone 19b-16 prokMSA_id:059838 AY133347 clone OB3_83 prokMSA_id:059837 AY133351 clone OB3_115 prokMSA_id:076446 AY164324 Thermoplasmatales clone ULIA-2 1.1.3.2.1.041 OTU 4 seqs prokMSA_id:069820 AF354128 isolate Eel-36a2A4 prokMSA_id:072991 AF354135 isolate SB-24a1H2 prokMSA_id:073643 AF354138 isolate SB-24a1C12 prokMSA_id:036504 AF354140 isolate Eel-36a2B9 1.1.3.2.1.042 OTU 1 seq prokMSA_id:042447 AF015981 2MT1 1.1.3.2.1.044 OTU 1 seq prokMSA_id:043303 AY063644 clone RS300-19 1.1.3.2.1.046 OTU 190 seqs prokMSA_id:044364 AB050218 SAGMA-M prokMSA_id:042674 AB050220 SAGMA-O prokMSA_id:030939 AB065295 Methanosarcina mazei prokMSA_id:067139 AB084244 clone:LCE prokMSA_id:067692 AE010754 Methanosarcina acetivorans str. C2A section 99 of 534 of the complete genome prokMSA_id:067694 AE010833 Methanosarcina acetivorans str. C2A section 178 of 534 of the complete genome prokMSA_id:067693 AE011184 Methanosarcina acetivorans str. C2A section 529 of 534 of the complete genome prokMSA_id:000476 AF020341 Methanosarcina FR str. FR. prokMSA_id:000374 AF028691 Methanosarcina mazei str. SarPi. prokMSA_id:000491 AF028692 Methanosarcina barkeri str. Sar. prokMSA_id:000379 AF132849 Methanosarcina mazei str. N2M9705. prokMSA_id:022452 AF142977 ACE2_A prokMSA_id:045603 AF225574 clone AS00-02 prokMSA_id:040828 AF225575 clone AS00-03 prokMSA_id:043312 AF225576 clone AS00-06 prokMSA_id:038907 AF225578 clone AS00-08 prokMSA_id:024209 AF225579 clone AS00-09 prokMSA_id:025603 AF225580 clone AS00-10 prokMSA_id:070019 AF225583 clone AS00-13 prokMSA_id:047844 AF225588 clone AS00-18 prokMSA_id:070902 AF225589 clone AS00-19 prokMSA_id:028183 AF225591 clone AS00-22 prokMSA_id:026085 AF225595 clone AS00-26 prokMSA_id:030365 AF225596 clone AS00-27 prokMSA_id:037356 AF225599 clone AS00-30 prokMSA_id:040571 AF225600 clone AS00-32 prokMSA_id:051936 AF225607 clone AS01-05 prokMSA_id:073194 AF225609 clone AS01-07 prokMSA_id:017646 AF225619 clone AS01-17 prokMSA_id:036956 AF225624 clone AS01-22 prokMSA_id:030805 AF225631 clone AS01-29 prokMSA_id:037379 AF225634 clone AS08-01 prokMSA_id:017636 AF225636 clone AS08-04 prokMSA_id:026442 AF225638 clone AS08-06 prokMSA_id:041306 AF225639 clone AS08-07 prokMSA_id:036797 AF225644 clone AS08-12 prokMSA_id:051741 AF225647 clone AS08-15 prokMSA_id:031315 AF225648 clone AS08-16 prokMSA_id:039240 AF225650 clone AS08-18 prokMSA_id:070777 AF225652 clone AS08-21 prokMSA_id:047400 AF225653 clone AS08-23 prokMSA_id:040034 AF225654 clone AS08-24 prokMSA_id:043888 AF225657 clone AS08-28 prokMSA_id:049826 AF225659 clone AS08-30 prokMSA_id:016806 AF225660 clone AS08-31 prokMSA_id:047179 AF225663 clone AS08-34 prokMSA_id:047706 AF225668 clone AS17-05 prokMSA_id:041302 AF225669 clone AS17-06 prokMSA_id:021184 AF225682 clone AS17-22 prokMSA_id:038146 AF225683 clone AS17-23 prokMSA_id:032996 AF225684 clone AS17-25 prokMSA_id:074698 AF225692 clone AS17-34 prokMSA_id:024965 AF276441 clone RFLP 1A prokMSA_id:031204 AF276444 clone RFLP 214A prokMSA_id:026729 AF276445 clone RFLP 308A prokMSA_id:025491 AF293014 Green Bay ferromanganous micronodule ARF3 prokMSA_id:041626 AF293015 Green Bay ferromanganous micronodule ARG4 prokMSA_id:041237 AF395424 Arc No. 7 prokMSA_id:018470 AF411467 Methanosarcina mazei strain O1M9704b prokMSA_id:035515 AF411468 Methanosarcina mazei strain O1M9702 prokMSA_id:018827 AF411469 Methanosarcina mazei strain O1M9701 prokMSA_id:032454 AF418927 clone HTA-B3 prokMSA_id:019730 AF418929 clone HTA-C1 prokMSA_id:040739 AF418932 clone HTA-D2 prokMSA_id:019991 AF418936 clone HTA-F1 prokMSA_id:000514 AJ002476 Methanosarcina barkeri str. CM1. prokMSA_id:000490 AJ012094 Methanosarcina barkeri str. MS DSM 800 . prokMSA_id:000373 AJ012095 Methanosarcina mazei str. C16 DSM 2053 . prokMSA_id:000403 AJ012742 Methanosarcina semesii str. MD1. prokMSA_id:000492 AJ227922 clone ARR6. prokMSA_id:000517 AJ227936 clone ARR23. prokMSA_id:000484 AJ227940 clone ARR28. prokMSA_id:000401 AJ227944 clone ARR32. prokMSA_id:000402 AJ227945 clone ARR34. prokMSA_id:000381 AJ236464 clone ST1-13. prokMSA_id:000382 AJ236480 clone ST1-29. prokMSA_id:000383 AJ236488 clone S15-7. prokMSA_id:000384 AJ236494 clone S15-13. prokMSA_id:000464 AJ236496 clone S15-15. prokMSA_id:000466 AJ236498 clone S15-17. prokMSA_id:000385 AJ236499 clone S15-18. prokMSA_id:000386 AJ236500 clone S15-19. prokMSA_id:000387 AJ236502 clone S15-21. prokMSA_id:000388 AJ236503 clone S15-22. prokMSA_id:000389 AJ236504 clone S15-23. prokMSA_id:000390 AJ236510 clone S15-29. prokMSA_id:000499 AJ236512 clone S30-11. prokMSA_id:000500 AJ236513 clone S30-8. prokMSA_id:000501 AJ236516 clone S30-3. prokMSA_id:000502 AJ236518 clone S30-5. prokMSA_id:000469 AJ236520 clone S30-10. prokMSA_id:000503 AJ236521 clone S30-6. prokMSA_id:000391 AJ236522 clone S30-21. prokMSA_id:000504 AJ236523 clone S30-28. prokMSA_id:000505 AJ236524 clone S30-26. prokMSA_id:000392 AJ236525 clone S30-27. prokMSA_id:000393 AJ236526 clone S30-23. prokMSA_id:000506 AJ236527 clone S30-25. prokMSA_id:000507 AJ236528 clone S30-19. prokMSA_id:000508 AJ236529 clone S30-24. prokMSA_id:000394 AJ236531 clone S30-4. prokMSA_id:000509 AJ236532 clone S30-20. prokMSA_id:000510 AJ236533 clone S30-18. prokMSA_id:000395 AJ236534 clone S30-14. prokMSA_id:000511 AJ236535 clone S30-12. prokMSA_id:000396 AJ236536 clone S30-15. prokMSA_id:000512 AJ236537 clone S30-13. prokMSA_id:000397 AJ236539 clone S30-17. prokMSA_id:000513 AJ236541 clone S30-16. prokMSA_id:000475 AJ238648 str. GS1-A. prokMSA_id:052649 AJ244282 anaerobic methanogenic ET1-6 prokMSA_id:041314 AJ244297 anaerobic methanogenic E30-1 prokMSA_id:025335 AJ244299 anaerobic methanogenic E30-3 prokMSA_id:047997 AJ244300 anaerobic methanogenic E30-4 prokMSA_id:023484 AJ244302 anaerobic methanogenic E30-6 prokMSA_id:047369 AJ244303 anaerobic methanogenic E30-7 prokMSA_id:044590 AJ244304 anaerobic methanogenic E30-8 prokMSA_id:046380 AJ244305 anaerobic methanogenic E30-9 prokMSA_id:045917 AJ244306 anaerobic methanogenic E30-10 prokMSA_id:027554 AJ290554 Cas14#1 prokMSA_id:032168 AJ290555 Cas14#2 prokMSA_id:035859 AJ290556 Cas14#3 prokMSA_id:022373 AJ290557 Cas14#4 prokMSA_id:038104 AJ290558 Cas14#5 prokMSA_id:039246 AJ290559 Cas14#6 prokMSA_id:026141 AJ290560 Cas18#1 prokMSA_id:051160 AJ290565 Cas19#2 prokMSA_id:040975 AJ290566 Cas19#3 prokMSA_id:046164 AJ290569 Cas19#6 prokMSA_id:048701 AJ290573 Cas20#4 prokMSA_id:020746 AJ308911 euryarchaeote clone ARS1-c53 prokMSA_id:033259 AJ308914 euryarchaeote clone ARS1-c59 prokMSA_id:029988 AJ308916 euryarchaeote clone ARS1-c64 prokMSA_id:021165 AJ308918 euryarchaeote clone ARS1-c76 prokMSA_id:037757 AJ308919 euryarchaeote clone ARS1-c77 prokMSA_id:036909 AJ308920 euryarchaeote clone ARS2-c2 prokMSA_id:024717 AJ308921 euryarchaeote clone ARS2-c13 prokMSA_id:019812 AJ308922 euryarchaeote clone ARS2-c18 prokMSA_id:048530 AJ308933 euryarchaeote clone ARS2-c77 prokMSA_id:043054 AJ308938 euryarchaeote clone ARS3-c13 prokMSA_id:030069 AJ308940 euryarchaeote clone ARS3-c37 prokMSA_id:073932 AJ308943 euryarchaeote clone ARS3-50 prokMSA_id:019965 AJ308955 euryarchaeote clone ARS7-c3 prokMSA_id:050871 AJ308956 euryarchaeote clone ARS7-c4 prokMSA_id:058527 AJ493114 clone LK12 prokMSA_id:041916 AY062224 clone GW70-10-1 prokMSA_id:041832 AY062232 clone GW70-20-11 prokMSA_id:048394 AY063603 clone RST-8 prokMSA_id:026999 AY063609 clone RST-14 prokMSA_id:036277 AY063613 clone RST-18 prokMSA_id:040216 AY063625 clone RST-30 prokMSA_id:034311 AY063631 clone RS300-6 prokMSA_id:024991 AY063632 clone RS300-7 prokMSA_id:050640 AY063634 clone RS300-9 prokMSA_id:040573 AY063635 clone RS300-10 prokMSA_id:041101 AY063636 clone RS300-11 prokMSA_id:044494 AY063639 clone RS300-14 prokMSA_id:040561 AY063640 clone RS300-15 prokMSA_id:028944 AY063642 clone RS300-17 prokMSA_id:026692 AY063643 clone RS300-18 prokMSA_id:033292 AY063645 clone RS300-20 prokMSA_id:021211 AY063646 clone RS300-21 prokMSA_id:034217 AY063648 clone RS300-23 prokMSA_id:042203 AY063649 clone RS300-24 prokMSA_id:024132 AY063650 clone RS300-25 prokMSA_id:050629 AY063662 clone RS0-7 prokMSA_id:041398 AY063669 clone RS0-14 prokMSA_id:037879 AY063671 clone RS0-16 prokMSA_id:033460 AY063674 clone RS0-19 prokMSA_id:052381 AY063681 clone RS0-26 prokMSA_id:025308 AY063684 clone RS0-29 prokMSA_id:039756 AY063686 clone RS500-1 prokMSA_id:031854 AY063694 clone RS500-9 prokMSA_id:030906 AY063696 clone RS500-11 prokMSA_id:052926 AY063697 clone RS500-12 prokMSA_id:043269 AY063704 clone RS500-19 prokMSA_id:036123 AY063705 clone RS500-20 prokMSA_id:055681 NC_003552 Methanosarcina acetivorans str. C2A complete genome prokMSA_id:000380 U81776 clone vadinDA05. prokMSA_id:000498 U81777 clone vadinCA25. prokMSA_id:000472 U89773 Methanosarcina siciliae str. C2J. prokMSA_id:000439 X69874 Methanosarcina mazei str. Go1. prokMSA_id:000400 Y15387 clone ABS4. prokMSA_id:000477 Y15394 clone ABS19. prokMSA_id:000515 Y15400 Methanosarcina sp. str. VeA23. prokMSA_id:000375 Y18067 clone EtOH3. prokMSA_id:000376 Y18068 clone EtOH5. prokMSA_id:000377 Y18070 clone EtOH7. prokMSA_id:000378 Y18071 clone EtOH8. prokMSA_id:000449 Y18072 clone EtOH9. 1.1.3.2.1.047 OTU 1 seq prokMSA_id:045908 AF199374 Euryarchaeote D4.75-4 1.1.3.2.1.049 OTU 49 seqs prokMSA_id:025643 AF225584 clone AS00-14 prokMSA_id:020729 AF225590 clone AS00-20 prokMSA_id:028866 AF225592 clone AS00-23 prokMSA_id:035375 AF225598 clone AS00-29 prokMSA_id:029975 AF225605 clone AS01-03 prokMSA_id:051814 AF225613 clone AS01-11 prokMSA_id:038645 AF225614 clone AS01-12 prokMSA_id:028105 AF225651 clone AS08-19 prokMSA_id:020265 AF225662 clone AS08-33 prokMSA_id:020076 AF225664 clone AS17-01 prokMSA_id:046872 AF225671 clone AS17-09 prokMSA_id:052494 AF225675 clone AS17-14 prokMSA_id:021550 AF225677 clone AS17-16 prokMSA_id:042603 AF225687 clone AS17-29 prokMSA_id:000446 AJ227921 clone ARR5. prokMSA_id:000447 AJ227923 clone ARR8. prokMSA_id:000448 AJ227924 clone ARR9. prokMSA_id:000478 AJ227926 clone ARR12. prokMSA_id:000479 AJ227927 clone ARR13. prokMSA_id:000480 AJ227928 clone ARR14. prokMSA_id:000481 AJ227930 clone ARR17. prokMSA_id:000482 AJ227933 clone ARR20. prokMSA_id:000413 AJ227937 clone ARR24. prokMSA_id:000485 AJ227942 clone ARR30. prokMSA_id:000486 AJ227943 clone ARR31. prokMSA_id:000487 AJ227950 clone ARR40. prokMSA_id:000415 AJ227953 clone ABS6. prokMSA_id:000457 AJ236452 clone ST1-1. prokMSA_id:000460 AJ236469 clone ST1-18. prokMSA_id:000462 AJ236476 clone ST1-25. prokMSA_id:000463 AJ236484 clone S15-3. prokMSA_id:000465 AJ236497 clone S15-16. prokMSA_id:000467 AJ236514 clone S30-2. prokMSA_id:000468 AJ236517 clone S30-9. prokMSA_id:000471 AJ236540 clone S30-30. prokMSA_id:024539 AJ244278 anaerobic methanogenic ET1-2 prokMSA_id:042431 AJ244279 anaerobic methanogenic ET1-3 prokMSA_id:024833 AJ244285 anaerobic methanogenic ET1-9 prokMSA_id:052492 AY063624 clone RST-29 prokMSA_id:035987 AY063628 clone RS300-3 prokMSA_id:038287 AY063629 clone RS300-4 prokMSA_id:047835 AY063661 clone RS0-6 prokMSA_id:046314 AY063663 clone RS0-8 prokMSA_id:000450 Y18074 clone H2-2. prokMSA_id:000451 Y18075 clone H2-4. prokMSA_id:000452 Y18076 clone H2-9. prokMSA_id:000453 Y18077 clone H2-10. prokMSA_id:000454 Y18078 clone H2-11. prokMSA_id:000455 Y18079 clone H2-12. 1.1.3.2.1.050 OTU 1 seq prokMSA_id:056748 AY166009 clone FZ2ba17 1.1.3.2.1.051 OTU 1 seq prokMSA_id:062892 AB077214 Methanosarcinales clone:KuA4 1.1.3.2.1.053 OTU 1 seq prokMSA_id:068322 AF356643 clone G72_C12 1.1.3.2.1.055 OTU 3 seqs prokMSA_id:068326 AF356639 clone G72_C1 prokMSA_id:068323 AF356642 clone G72_C6 prokMSA_id:068321 AF356645 clone G72_C61 1.1.3.2.1.999 poor quality 179 seqs prokMSA_id:039346 AB046180 GA10 prokMSA_id:036684 AB055983 WSB-1 prokMSA_id:047604 AB055986 WSB-4 prokMSA_id:044908 AB055992 WSB-10 prokMSA_id:017845 AB055996 WSB-14 prokMSA_id:025487 AB056006 AM-3 prokMSA_id:021219 AB056010 AM-7 prokMSA_id:035919 AB056011 AM-8 prokMSA_id:020131 AB056019 AM-16 prokMSA_id:040506 AB056021 AM-18 prokMSA_id:032840 AB056023 AM-20 prokMSA_id:025752 AB056026 OS-1 prokMSA_id:023877 AB056028 OS-3 prokMSA_id:053514 AB056030 OS-5 prokMSA_id:026189 AB056032 OS-7 prokMSA_id:017367 AB056042 OS-17 prokMSA_id:075297 AB062323 methanogenic symbiont PA119 prokMSA_id:075614 AB062325 methanogenic symbiont PA112 prokMSA_id:076560 AB062326 methanogenic symbiont PA104 prokMSA_id:076889 AB062327 methanogenic symbiont ST144 prokMSA_id:077070 AB062328 methanogenic symbiont ST107 prokMSA_id:076165 AB062329 methanogenic symbiont ST162 prokMSA_id:077006 AB062330 methanogenic symbiont ST158 prokMSA_id:077208 AB062331 methanogenic symbiont ST153 prokMSA_id:076729 AB062332 methanogenic symbiont ST165 prokMSA_id:076332 AB062333 methanogenic symbiont ST140 prokMSA_id:075826 AB062334 methanogenic symbiont PJ101 prokMSA_id:076439 AB062335 methanogenic symbiont PJ109 prokMSA_id:076758 AB062336 methanogenic symbiont ST159 prokMSA_id:076896 AB062337 methanogenic symbiont ST109 prokMSA_id:075141 AB062338 methanogenic symbiont PA103 prokMSA_id:076225 AB062339 methanogenic symbiont PA102 prokMSA_id:076141 AB062340 methanogenic symbiont PA114 prokMSA_id:076353 AB062341 methanogenic symbiont ST154 prokMSA_id:076383 AB062342 methanogenic symbiont ST103 prokMSA_id:076902 AB062343 methanogenic symbiont ST105 prokMSA_id:076236 AB062344 methanogenic symbiont ST126 prokMSA_id:077063 AB062345 methanogenic symbiont ST111 prokMSA_id:077059 AB062346 methanogenic symbiont ST117 prokMSA_id:075591 AB062347 methanogenic symbiont PA101 prokMSA_id:076303 AB062348 methanogenic symbiont ST113 prokMSA_id:075315 AB062349 methanogenic symbiont PA124 prokMSA_id:076067 AB062350 methanogenic symbiont PJ118 prokMSA_id:076580 AB062351 methanogenic symbiont ST168 prokMSA_id:077253 AB062352 methanogenic symbiont ST167 prokMSA_id:075820 AB062353 methanogenic symbiont ST143 prokMSA_id:075839 AB062354 methanogenic symbiont ST129 prokMSA_id:076911 AB062355 methanogenic symbiont PJ102 prokMSA_id:075666 AB062356 methanogenic symbiont PA105 prokMSA_id:075325 AB062357 methanogenic symbiont ST102 prokMSA_id:000419 AF015965 clone 1MT325. prokMSA_id:000420 AF015966 clone 2C100. prokMSA_id:000365 AF048767 unnamed organism. prokMSA_id:000366 AF048768 unnamed organism. prokMSA_id:000367 AF048769 unnamed organism. prokMSA_id:000368 AF048770 unnamed organism. prokMSA_id:000369 AF048771 unnamed organism. prokMSA_id:000370 AF048772 unnamed organism. prokMSA_id:000363 AF081942 clone NS-TS10-284. prokMSA_id:000444 AF134384 clone TA1a4. prokMSA_id:000398 AF146266 Methanogenium SCALE-14. prokMSA_id:000489 AF149891 str. A8.96.42. prokMSA_id:000399 AF153808 Methanosarcina mazei str. O1M9704. prokMSA_id:028672 AF218430 euryarchaeote clone A2M8 prokMSA_id:016896 AF262036 Methanosarcina mazei prokMSA_id:042903 AF293510 euryarchaeote clone P1-Ar-12 prokMSA_id:045534 AF293511 euryarchaeote clone P1-Ar-13 prokMSA_id:035561 AF293512 euryarchaeote clone P1-Ar-14 prokMSA_id:018310 AF293513 euryarchaeote clone P1-Ar-15 prokMSA_id:035091 AF293527 euryarchaeote clone P1-Ar-19 prokMSA_id:035771 AF293528 euryarchaeote clone P1-Ar-20 prokMSA_id:032342 AF293529 euryarchaeote clone P1-Ar-21 prokMSA_id:054791 AF293530 euryarchaeote clone P1-Ar-22 prokMSA_id:033559 AF293531 euryarchaeote clone P1-Ar-23 prokMSA_id:040656 AF293532 euryarchaeote clone P1-Ar-25 prokMSA_id:018593 AF293533 euryarchaeote clone P1-Ar-26 prokMSA_id:048239 AF293534 euryarchaeote clone P1-Ar-27 prokMSA_id:033973 AF293535 euryarchaeote clone P1-Ar-28 prokMSA_id:027708 AF293536 euryarchaeote clone P1-Ar-29 prokMSA_id:051355 AF293537 euryarchaeote clone P1-Ar-30 prokMSA_id:072875 AF314248 clone ANME 17 prokMSA_id:071029 AF314250 clone ANME 23 prokMSA_id:052344 AF339848 clone AA prokMSA_id:048032 AF339849 clone AB prokMSA_id:073481 AF364949 clone clL1arc prokMSA_id:073689 AF374283 euryarchaeote EHB95 prokMSA_id:070321 AF374284 euryarchaeote EHB216 prokMSA_id:074205 AF374285 euryarchaeote EHB97 prokMSA_id:069936 AF419650 AT_R007 prokMSA_id:052710 AF432127 Methanosarcina lacustera prokMSA_id:029021 AF448451 IUA162 prokMSA_id:033589 AF473904 euryarchaeote t42_21H prokMSA_id:043061 AF473905 euryarchaeote t42_19E prokMSA_id:066227 AF509441 Methanobrevibacter smithii clone 17f prokMSA_id:056357 AF515508 euryarchaeote clone PPArcW23 prokMSA_id:059408 AF540862 clone DP10u12 prokMSA_id:000410 AJ236479 clone ST1-28. prokMSA_id:039059 AJ239989 euryarchaeote strain DGGE band CIARC-2 prokMSA_id:037611 AJ290564 Cas19#1 prokMSA_id:019429 AJ290567 Cas19#4 prokMSA_id:045255 AJ290568 Cas19#5 prokMSA_id:041216 AJ290570 Cas20#1 prokMSA_id:016672 AJ290571 Cas20#2 prokMSA_id:051884 AJ290572 Cas20#3 prokMSA_id:069250 AJ290574 Cas20#5 prokMSA_id:042797 AJ305065 63-A4 clone 63-A4 prokMSA_id:017428 AJ305070 63-A9 clone 63-A9 prokMSA_id:027247 AJ305072 63-A11 clone 63-A11 prokMSA_id:032196 AJ305078 63-A18 clone 63-A18 prokMSA_id:028912 AJ305080 63-A20 clone 63-A20 prokMSA_id:029795 AJ305081 63-A21 clone 63-A21 prokMSA_id:027059 AJ305082 63-A22 clone 63-A22 prokMSA_id:066892 AJ312016 clone SHC-10 prokMSA_id:058523 AJ493115 clone LK68 prokMSA_id:058521 AJ493116 clone LK1 prokMSA_id:058520 AJ493117 clone LK42 prokMSA_id:073520 AY032985 ASDS4 prokMSA_id:050007 AY032986 ASDS6 prokMSA_id:045367 AY032987 ASDS7 prokMSA_id:029089 AY032995 ASDS17 prokMSA_id:039017 AY032996 ASDS18 prokMSA_id:072004 AY055765 clone Gain8 prokMSA_id:040915 AY055767 clone Gain13 prokMSA_id:054129 AY063596 clone RST-1 prokMSA_id:017183 AY063597 clone RST-2 prokMSA_id:050260 AY063598 clone RST-3 prokMSA_id:030106 AY063599 clone RST-4 prokMSA_id:048408 AY063600 clone RST-5 prokMSA_id:022989 AY063601 clone RST-6 prokMSA_id:018734 AY063605 clone RST-10 prokMSA_id:037082 AY063614 clone RST-19 prokMSA_id:052219 AY063616 clone RST-21 prokMSA_id:030339 AY063617 clone RST-22 prokMSA_id:028166 AY063619 clone RST-24 prokMSA_id:020137 AY063621 clone RST-26 prokMSA_id:043945 AY063623 clone RST-28 prokMSA_id:023800 AY063630 clone RS300-5 prokMSA_id:019784 AY063638 clone RS300-13 prokMSA_id:034555 AY063641 clone RS300-16 prokMSA_id:020638 AY063651 clone RS300-26 prokMSA_id:040873 AY063653 clone RS300-28 prokMSA_id:032891 AY063654 clone RS300-29 prokMSA_id:016777 AY063655 clone RS300-30 prokMSA_id:039666 AY063657 clone RS0-2 prokMSA_id:036634 AY063673 clone RS0-18 prokMSA_id:030969 AY063675 clone RS0-20 prokMSA_id:042995 AY063676 clone RS0-21 prokMSA_id:024769 AY063683 clone RS0-28 prokMSA_id:048613 AY063685 clone RS0-30 prokMSA_id:030657 AY063692 clone RS500-7 prokMSA_id:027967 AY063707 clone RS500-22 prokMSA_id:052105 AY063708 clone RS500-23 prokMSA_id:029008 AY063709 clone RS500-24 prokMSA_id:047787 AY063710 clone RS500-25 prokMSA_id:035568 AY063711 clone RS500-26 prokMSA_id:052707 AY063712 clone RS500-27 prokMSA_id:022446 AY063713 clone RS500-28 prokMSA_id:060803 AY118148 Methanosarcinales clone OR-M8 prokMSA_id:056771 AY165978 clone FZ2bA103 prokMSA_id:000362 M59127 Methanococcoides methylutens str. TMA-10 DSM 2657 . prokMSA_id:000404 M59132 Methanohalophilus sp. str. SF1 DSM 3243. prokMSA_id:000360 M59133 Methanohalophilus mahii ATCC 35705 . prokMSA_id:000423 M59135 Methanolobus tindarius str. Tindari 3 DSM 2278 . prokMSA_id:000406 M59136 Methanosarcina sp. str. WH1 DSM 4659. prokMSA_id:000407 M59137 Methanosarcina acetivorans str. C2A DSM 2834 . prokMSA_id:000372 M59138 Methanosarcina mazei str. C16 ATCC 43340 . prokMSA_id:000424 M59140 Methanosarcina thermophila str. TM-1 DSM 1825 . prokMSA_id:000416 M59144 Methanosarcina barkeri str. 227 DSM 1538. prokMSA_id:000371 NONE Methanohalophilus zhilinae str. WeN5 DSM 4017 . prokMSA_id:000435 U20148 Methanolobus bombayensis str. B-1 OCM 438 . prokMSA_id:000425 U20149 Methanohalobium evestigatum str. Z-7303 DSM 3721 . prokMSA_id:000359 U20150 Methanosarcina vacuolata str. Z-761. prokMSA_id:000405 U20151 Methanosarcina mazei str. S-6. prokMSA_id:000436 U20152 Methanolobus oregonensis str. WAL1 DSM 5435 . prokMSA_id:000417 U20153 Methanosarcina siciliae str. TA/M DSM 3028 . prokMSA_id:000418 U20154 Methanolobus taylorii str. GS-16. prokMSA_id:000433 U20155 Methanolobus vulcani str. PL-12/M DSM 3029 . prokMSA_id:000408 U87515 clone LMA134. prokMSA_id:000409 U87516 clone LMA126. 1.1.3.2.2 METHANOSAETA 253 seqs 1.1.3.2.2.004 OTU 2 seqs prokMSA_id:000578 AF126858 clone SYA-112. prokMSA_id:000574 AF126865 clone SYA-141. 1.1.3.2.2.005 OTU 5 seqs prokMSA_id:041805 AF225582 clone AS00-12 prokMSA_id:000537 AJ227919 clone ARR2. prokMSA_id:000573 AJ227931 clone ARR18. prokMSA_id:037876 Y18066 archeobacteria Clone EtOH2 prokMSA_id:000546 Y18069 clone EtOH6. 1.1.3.2.2.010 OTU 1 seq prokMSA_id:000560 AJ236501 clone S15-20. 1.1.3.2.2.011 OTU 2 seqs prokMSA_id:000559 AJ236491 clone S15-10. prokMSA_id:016866 AJ244292 anaerobic methanogenic E15-6 1.1.3.2.2.012 OTU 2 seqs prokMSA_id:000556 AJ236486 clone S15-5. prokMSA_id:050126 AY063690 clone RS500-5 1.1.3.2.2.013 OTU 1 seq prokMSA_id:000554 AJ131277 clone VAL33-1. 1.1.3.2.2.014 OTU 1 seq prokMSA_id:000549 Y18086 clone Rot10. 1.1.3.2.2.017 OTU 15 seqs prokMSA_id:000533 AF050620 clone WCHD3-34. prokMSA_id:074828 AF225603 clone AS00-35 prokMSA_id:043391 AF225658 clone AS08-29 prokMSA_id:048279 AJ244280 anaerobic methanogenic ET1-4 prokMSA_id:041595 AJ308972 euryarchaeote clone AS04-16 prokMSA_id:020925 AJ310452 RSS50-2 clone RSS50-2 prokMSA_id:028877 AY062226 clone GW70-10-14 prokMSA_id:046137 AY063615 clone RST-20 prokMSA_id:050115 AY063626 clone RS300-1 prokMSA_id:039847 AY063647 clone RS300-22 prokMSA_id:038761 AY063652 clone RS300-27 prokMSA_id:026083 AY063677 clone RS0-22 prokMSA_id:036781 AY063687 clone RS500-2 prokMSA_id:026428 AY063695 clone RS500-10 prokMSA_id:031866 AY063702 clone RS500-17 1.1.3.2.2.019 OTU 1 seq prokMSA_id:000526 AF119123 unnamed organism. 1.1.3.2.2.025 OTU 1 seq prokMSA_id:020919 AF225667 clone AS17-04 1.1.3.2.2.028 OTU 1 seq prokMSA_id:023885 AJ244293 anaerobic methanogenic E15-7 1.1.3.2.2.029 OTU 1 seq prokMSA_id:024868 AY063633 clone RS300-8 1.1.3.2.2.030 OTU 2 seqs prokMSA_id:025991 AF402986 clone archaeap3 prokMSA_id:049392 AF402987 crenarchaeote clone archaeap11 1.1.3.2.2.031 OTU 1 seq prokMSA_id:038768 AF225686 clone AS17-28 1.1.3.2.2.032 OTU 1 seq prokMSA_id:044079 AY063672 clone RS0-17 1.1.3.2.2.033 OTU 1 seq prokMSA_id:046663 AF424530 euryarchaeote MERTZ_2CM_151 1.1.3.2.2.035 OTU 117 seqs prokMSA_id:037564 AB050217 SAGMA-L prokMSA_id:044882 AB050219 SAGMA-N prokMSA_id:024169 AB050236 SAGMA-6 prokMSA_id:072392 AB071701 Methanothrix thermophila prokMSA_id:062894 AB077211 Methanosaeta sp. clone:KuA1 prokMSA_id:062893 AB077213 Methanosarcinales clone:KuA3 prokMSA_id:067140 AB084242 clone:LCC prokMSA_id:000529 AF015973 clone 2C300X. prokMSA_id:000531 AF015990 clone 2MT53. prokMSA_id:017194 AF015993 2MT98 prokMSA_id:000532 AF050611 Methanosaeta WCHD3-03. prokMSA_id:000534 AF056363 unnamed organism. prokMSA_id:000535 AF056364 unnamed organism. prokMSA_id:000587 AF126837 clone SYA-7. prokMSA_id:000586 AF126838 clone SYA-8. prokMSA_id:000585 AF126839 clone SYA-12. prokMSA_id:000584 AF126841 clone SYA-20. prokMSA_id:000583 AF126842 clone SYA-26. prokMSA_id:000582 AF126843 clone SYA-30. prokMSA_id:000581 AF126848 clone SYA-62. prokMSA_id:000580 AF126850 clone SYA-74. prokMSA_id:000579 AF126856 clone SYA-94. prokMSA_id:000577 AF126859 clone SYA-122. prokMSA_id:000576 AF126862 clone SYA-130. prokMSA_id:040735 AF225587 clone AS00-17 prokMSA_id:044062 AF225606 clone AS01-04 prokMSA_id:034605 AF225611 clone AS01-09 prokMSA_id:046315 AF225612 clone AS01-10 prokMSA_id:043644 AF225616 clone AS01-14 prokMSA_id:048780 AF225621 clone AS01-19 prokMSA_id:034101 AF225622 clone AS01-20 prokMSA_id:039753 AF225626 clone AS01-24 prokMSA_id:030302 AF225627 clone AS01-25 prokMSA_id:052652 AF225628 clone AS01-26 prokMSA_id:042462 AF225630 clone AS01-28 prokMSA_id:028814 AF225632 clone AS01-30 prokMSA_id:038472 AF225641 clone AS08-09 prokMSA_id:074761 AF225656 clone AS08-27 prokMSA_id:027726 AF225661 clone AS08-32 prokMSA_id:074578 AF225670 clone AS17-07 prokMSA_id:020812 AF225680 clone AS17-20 prokMSA_id:033118 AF225685 clone AS17-26 prokMSA_id:018377 AF225690 clone AS17-32 prokMSA_id:018325 AF225691 clone AS17-33 prokMSA_id:019676 AF229774 TA01 prokMSA_id:049668 AF229777 TA04 prokMSA_id:043511 AF276443 clone RFLP 43A prokMSA_id:072855 AF364943 clone clH26arc prokMSA_id:032797 AF364944 clone clH28arc prokMSA_id:072889 AF374280 euryarchaeote EHB76 prokMSA_id:045829 AF388538 Dehalococcoides sp. clone DHC-kan prokMSA_id:019326 AF395423 Arc No. 5 prokMSA_id:038481 AF418924 clone HTA-A1 prokMSA_id:026408 AF418933 clone HTA-D5 prokMSA_id:022948 AF423188 Toluene-degrading methanogenic consortium M2 prokMSA_id:032447 AF424767 61-2 prokMSA_id:025452 AF424772 120A-4 prokMSA_id:058763 AF481336 clone Fuku01 prokMSA_id:070531 AF481337 clone Fuku02 prokMSA_id:070351 AF481338 clone Fuku03 prokMSA_id:072870 AF481339 clone Fuku04 prokMSA_id:074290 AF481344 clone Fuku09 prokMSA_id:056636 AF515510 euryarchaeote clone PPArcW30 prokMSA_id:064534 AF515518 euryarchaeote clone PPArcW53 prokMSA_id:000538 AJ009508 clone SJC-11b. prokMSA_id:000539 AJ009509 clone SJC-125a. prokMSA_id:000541 AJ009511 clone SJD-103. prokMSA_id:000542 AJ009512 clone SJD-105. prokMSA_id:000543 AJ009513 clone SJD-107. prokMSA_id:027475 AJ133791 Methanosaeta sp. Clone A1 prokMSA_id:000557 AJ236489 clone S15-8. prokMSA_id:000558 AJ236490 clone S15-9. prokMSA_id:000561 AJ236505 clone S15-24. prokMSA_id:000562 AJ236506 clone S15-25. prokMSA_id:021426 AJ244281 anaerobic methanogenic ET1-5 prokMSA_id:074486 AJ244288 anaerobic methanogenic E15-2 prokMSA_id:023906 AJ244290 anaerobic methanogenic E15-4 prokMSA_id:035617 AJ244291 anaerobic methanogenic E15-5 prokMSA_id:035600 AJ244294 anaerobic methanogenic E15-8 prokMSA_id:018934 AJ244295 anaerobic methanogenic E15-9 prokMSA_id:000555 AJ249242 clone R5. prokMSA_id:037746 AJ276397 Methanosaeta sp. AMPB-Zg prokMSA_id:034603 AJ288310 clone AC3 prokMSA_id:026327 AJ288313 clone AC6 prokMSA_id:025898 AJ288314 clone AC66 prokMSA_id:022619 AJ288315 clone AC7 prokMSA_id:035854 AJ288318 clone AC9 prokMSA_id:024592 AJ288321 clone AC106 prokMSA_id:037884 AJ288322 clone AC11 prokMSA_id:022779 AJ288323 clone AC19 prokMSA_id:027152 AJ288324 clone AC20 prokMSA_id:066894 AJ312015 clone SHB-23 prokMSA_id:066891 AJ312017 clone SHC-216 prokMSA_id:034822 AY053469 AT425_ArC3 prokMSA_id:021628 AY053470 AT425_ArC7 prokMSA_id:040801 AY053473 AT425_ArD7 prokMSA_id:018620 AY062229 clone GW70-10-2 prokMSA_id:042884 AY062231 clone GW70-10-49 prokMSA_id:032613 AY062233 clone GW70-20-13 prokMSA_id:019118 AY062234 clone GW70-20-23 prokMSA_id:025147 AY063602 clone RST-7 prokMSA_id:020045 AY063607 clone RST-12 prokMSA_id:000524 X16932 Methanosaeta concilii str. Opfikon DSM 2139. prokMSA_id:000525 X51423 Methanosaeta concilii str. Opfikon. prokMSA_id:000566 Y15386 clone AB2. prokMSA_id:000568 Y15391 clone ABS11. prokMSA_id:000569 Y15392 clone ABS14. prokMSA_id:000570 Y15393 clone ABS18. prokMSA_id:000571 Y15396 clone ABS21. prokMSA_id:000572 Y15398 clone A5.1-A. prokMSA_id:000565 Y15402 Methanosaeta concilii str. VeAc9. prokMSA_id:000547 Y18082 clone Rot3. prokMSA_id:000548 Y18083 clone Rot4. prokMSA_id:000550 Y18087 clone Rot11. prokMSA_id:000551 Y18090 clone Rot16. prokMSA_id:000552 Y18091 clone Rot18. prokMSA_id:000553 Y18094 clone Rot25. 1.1.3.2.2.036 OTU 1 seq prokMSA_id:056331 AY102917 clone BCM3S-26A 1.1.3.2.2.037 OTU 1 seq prokMSA_id:061898 AJ310873 clone LKS24 1.1.3.2.2.038 OTU 1 seq prokMSA_id:062888 AB077215 Methanosarcinales clone:KuA5 1.1.3.2.2.039 OTU 1 seq prokMSA_id:062889 AB077217 Methanosarcinales clone:KuA7 1.1.3.2.2.040 OTU 1 seq prokMSA_id:062891 AB077212 Methanosarcinales clone:KuA2 1.1.3.2.2.041 OTU 1 seq prokMSA_id:071136 AF354131 isolate SB-24a1A12 1.1.3.2.2.042 OTU 1 seq prokMSA_id:072917 AF220306 O23F7 1.1.3.2.2.999 poor quality 91 seqs prokMSA_id:000563 AB011293 clone MUG1. prokMSA_id:000564 AB011294 clone MUG2. prokMSA_id:000520 AB011329 clone TUG1. prokMSA_id:000521 AB011330 clone TUG2. prokMSA_id:029656 AB046177 GA01 prokMSA_id:042182 AB046179 GA04 prokMSA_id:022351 AB046182 GA42 prokMSA_id:032406 AB046185 GA67 prokMSA_id:032583 AB046186 GA77 prokMSA_id:074647 AB046194 HA10 prokMSA_id:028250 AB046196 HA19 prokMSA_id:032962 AB046197 HA25 prokMSA_id:068896 AB050247 SAGMA-17 prokMSA_id:031356 AB056000 WSB-18 prokMSA_id:024605 AB056001 WSB-19 prokMSA_id:029563 AB056003 WSB-21 prokMSA_id:051086 AB056027 OS-2 prokMSA_id:040998 AB056036 OS-11 prokMSA_id:032137 AB056043 OS-18 prokMSA_id:047717 AB056055 OS-30 prokMSA_id:000530 AF015980 clone 2C9. prokMSA_id:000536 AF056365 unnamed organism. prokMSA_id:000575 AF126864 clone SYA-136. prokMSA_id:069954 AF334401 Methanosaeta thermoacetophila prokMSA_id:071737 AF374281 euryarchaeote EHB109 prokMSA_id:072790 AF374282 euryarchaeote EHB12 prokMSA_id:041510 AF376788 isolate MUAHR 1 prokMSA_id:053755 AF376789 isolate MUAHR 2 prokMSA_id:071814 AF447156 clone TDC-AR6 prokMSA_id:072882 AF455067 clone A2 prokMSA_id:070843 AF455069 clone A4 prokMSA_id:070478 AF455070 clone A5 prokMSA_id:064115 AF477911 clone 60-UMH 8% pond prokMSA_id:066226 AF509440 Methanosaeta concilii clone 12f prokMSA_id:066223 AF509442 Methanosaeta concilii clone 18f prokMSA_id:066221 AF509448 Methanosaeta concilii clone 35i prokMSA_id:066217 AF509449 Methanosaeta concilii clone 36i prokMSA_id:055457 AF509450 Methanosaeta concilii clone 37i prokMSA_id:066212 AF509451 Methanosaeta concilii clone 38i prokMSA_id:066214 AF509452 Methanosaeta concilii clone 39h prokMSA_id:066203 AF509464 Methanosaeta concilii clone 25 prokMSA_id:066202 AF509466 Methanosaeta concilii clone 36 prokMSA_id:064544 AF515501 euryarchaeote clone PPArcW10 prokMSA_id:064543 AF515503 euryarchaeote clone PPArcW5 prokMSA_id:064542 AF515504 euryarchaeote clone PPArcW8 prokMSA_id:055829 AF515505 euryarchaeote clone PPArcW15 prokMSA_id:064539 AF515509 euryarchaeote clone PPArcW29 prokMSA_id:064540 AF515511 euryarchaeote clone PPArcW31 prokMSA_id:064538 AF515512 euryarchaeote clone PPArcW34 prokMSA_id:064537 AF515513 euryarchaeote clone PPArcW38 prokMSA_id:056464 AF515514 euryarchaeote clone PPArcW39 prokMSA_id:064535 AF515515 euryarchaeote clone PPArcW40 prokMSA_id:064536 AF515516 euryarchaeote clone PPArcW44 prokMSA_id:056025 AF515517 euryarchaeote clone PPArcW50 prokMSA_id:064532 AF515519 euryarchaeote clone PPArcW57 prokMSA_id:064530 AF515520 euryarchaeote clone PPArcW60 prokMSA_id:047518 AH003996 Methanothrix thermoacetophila Z-517 DSM 4774 539 nt 3 segments prokMSA_id:000540 AJ009510 clone SJD-102. prokMSA_id:000544 AJ009514 clone SJD-111. prokMSA_id:000545 AJ009515 clone SJD-114. prokMSA_id:020980 AY032982 ASDS1 prokMSA_id:025238 AY032983 ASDS2 prokMSA_id:072944 AY055763 clone Gain6 prokMSA_id:042108 AY063604 clone RST-9 prokMSA_id:020847 AY063606 clone RST-11 prokMSA_id:036515 AY063610 clone RST-15 prokMSA_id:044454 AY063611 clone RST-16 prokMSA_id:046203 AY063612 clone RST-17 prokMSA_id:021310 AY063618 clone RST-23 prokMSA_id:044851 AY063620 clone RST-25 prokMSA_id:016914 AY063622 clone RST-27 prokMSA_id:016699 AY063627 clone RS300-2 prokMSA_id:051471 AY063665 clone RS0-10 prokMSA_id:017767 AY063670 clone RS0-15 prokMSA_id:046524 AY063688 clone RS500-3 prokMSA_id:039207 AY063691 clone RS500-6 prokMSA_id:036539 AY063715 clone RS500-30 prokMSA_id:060807 AY118146 Methanosaeta sp. clone OR-M6 prokMSA_id:056774 AY165973 clone FZ2bA56 prokMSA_id:000528 D88129 clone GU332. prokMSA_id:000519 M59141 Methanosaeta thermoacetophila str. CALS-1 DSM 3870. prokMSA_id:000588 M59146 Methanosaeta concilii str. FE DSM 3013. prokMSA_id:000589 S42679 Methanosaeta concilii str. GP6 DSM 3671 . prokMSA_id:000591 S42683 Methanosaeta concilii str. UA. prokMSA_id:000590 S42711 Methanosaeta concilii str. PM. prokMSA_id:000518 S42714 Methanosaeta thermoacetophila str. CALS-1 DSM 3870. prokMSA_id:000522 S42717 Methanosaeta thermoacetophila str. Z-517 DSM 4774 . prokMSA_id:000523 S42728 Methanosaeta thermoacetophila str. PT DSM 6194 . prokMSA_id:000592 S42880 Methanosaeta concilii str. Opfikon DSM 2139. prokMSA_id:000527 U78204 clone SB95-41. prokMSA_id:000567 Y15389 clone ABS9. 1.1.3.3 MSR.SP_STR_R17 2 seqs 1.1.3.3.001 OTU 2 seqs prokMSA_id:031310 AF418926 clone HTA-B12 prokMSA_id:000593 L48408 Methanosarcina sp. str. R17. 1.1.3.4 HALOPHILIC_ARCHAEA 493 seqs 1.1.3.4.1 HBM.GOMORRENSE_SUBGROUP 7 seqs 1.1.3.4.1.001 OTU 1 seq prokMSA_id:000599 AF142879 clone DEEP-5. 1.1.3.4.1.002 OTU 3 seqs prokMSA_id:000598 AF142880 clone DEEP-6. prokMSA_id:000597 AF142881 clone DEEP-7. prokMSA_id:000596 AF142882 clone DEEP-8. 1.1.3.4.1.003 OTU 1 seq prokMSA_id:000595 AF118659 clone pBRKC22. 1.1.3.4.1.999 poor quality 2 seqs prokMSA_id:023475 AF291157 EnvI-182 prokMSA_id:000594 L37444 Halobaculum gomorrense str. DS2807 DSM 9297 . 1.1.3.4.2 HF.VOLCANII_SUBGROUP 65 seqs 1.1.3.4.2.001 OTU 2 seqs prokMSA_id:045692 AH003665 Haloferax alicantei prokMSA_id:000611 M33803 Haloferax sp. str. Aa 2.2. 1.1.3.4.2.002 OTU 12 seqs prokMSA_id:047309 AB037474 Haloferax alexandrinus complete prokMSA_id:025672 AB074566 Haloferax volcanii prokMSA_id:000606 AF015976 clone 2C82. prokMSA_id:029381 AF015988 2MT310 prokMSA_id:000608 AF069950 Haloferax D1227 str. D1227. prokMSA_id:000600 D11107 Haloferax mediterranei ATCC 33500 . prokMSA_id:000610 D13378 Haloferax gibbonsii ATCC 33959 . prokMSA_id:074464 D13378 Haloferax gibbonsii complete prokMSA_id:071072 D14128 Haloferax denitrificans complete prokMSA_id:000603 D14128 Haloferax denitrificans ATCC 35960 . prokMSA_id:000604 K00421 Haloferax volcanii str. DS-2 ATCC 29605 . prokMSA_id:000607 U68540 Haloferax volcanii str. E8. 1.1.3.4.2.003 OTU 2 seqs prokMSA_id:000609 AF002984 Halogeometricum borinquense str. PR 3 ATCC 700274 . prokMSA_id:042829 AJ276863 Halophilic PalaeII strain PalaeII 1.1.3.4.2.004 OTU 1 seq prokMSA_id:000605 AF015964 clone 1MT315. 1.1.3.4.2.005 OTU 1 seq prokMSA_id:000602 AF142883 clone DEEP-9. 1.1.3.4.2.006 OTU 1 seq prokMSA_id:000601 AF142884 clone DEEP-10. 1.1.3.4.2.007 OTU 8 seqs prokMSA_id:019437 AJ278932 A140 prokMSA_id:023938 AJ278941 A177 prokMSA_id:044464 AJ278942 A178 prokMSA_id:053779 AJ308003 clone DIE1 prokMSA_id:028242 AJ344304 clone HW55 prokMSA_id:026024 AJ344308 clone HW11 prokMSA_id:017099 AJ344316 clone HW105 prokMSA_id:024969 AJ344317 clone HW54 1.1.3.4.2.008 OTU 4 seqs prokMSA_id:070611 AJ308019 clone DIE28 prokMSA_id:050299 AJ344303 clone HW5 prokMSA_id:046041 AJ344312 clone HW3 prokMSA_id:024020 AJ344318 clone HW10 1.1.3.4.2.009 OTU 2 seqs prokMSA_id:035866 AF142983 ORGANIC5_A prokMSA_id:037132 AF142985 ORGANIC1_A 1.1.3.4.2.010 OTU 1 seq prokMSA_id:039274 AF196290 JDS-1 1.1.3.4.2.011 OTU 5 seqs prokMSA_id:064104 AF477927 clone 8-UMH 22% pond prokMSA_id:064096 AF477935 clone 2-UMH 31% pond prokMSA_id:064090 AF477940 clone 42-UMH 31% pond prokMSA_id:043013 X84084 Unknown organism prokMSA_id:039318 X84331 Unknown PCR fragment of an archaeal microorganism 1.1.3.4.2.012 OTU 1 seq prokMSA_id:062506 AF513927 euryarchaeote clone LA1-A10 1.1.3.4.2.013 OTU 1 seq prokMSA_id:064094 AF477937 clone 32-UMH 31% pond 1.1.3.4.2.014 OTU 3 seqs prokMSA_id:066403 AF505660 haloarchaeon clone ZB-A1 prokMSA_id:066366 AF505698 haloarchaeon clone ZB-A42 prokMSA_id:066358 AF505706 haloarchaeon clone ZB-A52 1.1.3.4.2.015 OTU 1 seq prokMSA_id:073884 AJ308016 clone FCII3 1.1.3.4.2.999 poor quality 20 seqs prokMSA_id:041199 AF015982 2MT103 prokMSA_id:051298 AF211309 Halobacteriales MT11 prokMSA_id:022819 AF211310 Halobacteriales MT18 prokMSA_id:039688 AF291156 EnvI-181 prokMSA_id:051441 AF291158 EnvI-184 prokMSA_id:064102 AF477925 clone 24-UMH 22% pond prokMSA_id:064103 AF477928 clone 1-PML 22% pond prokMSA_id:064099 AF477930 clone 3-PML 22% pond prokMSA_id:064097 AF477933 clone 4-PML 22% pond prokMSA_id:064092 AF477934 clone 5-PML 22% pond prokMSA_id:064086 AF477945 clone 5-PML 31% pond prokMSA_id:064078 AF477953 prokaryote isolate DGGE Band 506-ICM 15% pond prokMSA_id:071057 AF477954 prokaryote isolate DGGE Band 508-ICM 15% pond prokMSA_id:064074 AF477955 prokaryote isolate DGGE Band 513-ICM 37% pond prokMSA_id:055608 AF506945 haloarchaeon HC22 prokMSA_id:047968 AJ270242 Haloarchaeon str. T1.3 strain T1.3 prokMSA_id:072457 AJ308007 clone DIE3 prokMSA_id:057393 AJ517889 clone mCMC38.3 prokMSA_id:056062 AJ517894 clone mOO13.3 prokMSA_id:057385 AJ517900 clone E8.2 1.1.3.4.3 HR.SACCHAROVORUM_SUBGROUP 100 seqs 1.1.3.4.3.002 OTU 1 seq prokMSA_id:000629 AF118666 clone pBRKC125. 1.1.3.4.3.003 OTU 1 seq prokMSA_id:000628 AF118667 clone pBRKC128. 1.1.3.4.3.004 OTU 1 seq prokMSA_id:000623 X53570 Halorubrum saccharovorum NCIMB 2081 . 1.1.3.4.3.005 OTU 1 seq prokMSA_id:000620 AF118663 clone pBRKC101. 1.1.3.4.3.006 OTU 1 seq prokMSA_id:000619 AF118665 clone pBRKC112. 1.1.3.4.3.007 OTU 3 seqs prokMSA_id:053794 AJ278935 A151 prokMSA_id:072249 AJ278937 A154 prokMSA_id:023696 AJ344306 clone HW107 1.1.3.4.3.009 OTU 1 seq prokMSA_id:056715 AF199373 Euryarchaeote D4.75-18 1.1.3.4.3.010 OTU 1 seq prokMSA_id:064091 AF477939 clone 4-UMH 31% pond 1.1.3.4.3.011 OTU 1 seq prokMSA_id:064120 AF477905 clone 44-UMH 8% pond 1.1.3.4.3.012 OTU 1 seq prokMSA_id:064121 AF477906 clone 11-UMH 8% pond 1.1.3.4.3.014 OTU 27 seqs prokMSA_id:000631 AF142875 Halorubrum DEEP-1. prokMSA_id:000630 AF142984 clone ORGANIC4_A. prokMSA_id:045762 AF435111 Halorubrum tibetense prokMSA_id:064080 AF477950 'A319-UMH 31% pond' prokMSA_id:066396 AF505667 haloarchaeon clone ZB-A8 prokMSA_id:066379 AF505686 haloarchaeon clone ZB-A30 prokMSA_id:066374 AF505691 haloarchaeon clone ZB-A35 prokMSA_id:066370 AF505694 haloarchaeon clone ZB-A38 prokMSA_id:066259 AF506958 Halophilic SC3 prokMSA_id:066254 AF506963 Halophilic HS47 prokMSA_id:035867 AJ270246 Haloarchaeon str. MAlk006.3 strain MAlk006.3 prokMSA_id:026531 AJ308009 clone EMF12 prokMSA_id:071801 AJ308014 clone FC6 prokMSA_id:043177 AJ400624 Halophilic NaxosII strain NaxosII prokMSA_id:057545 AY149598 Halorubrum tibetense strain 8W8 prokMSA_id:000622 D13379 Halorubrum sodomense str. RD-26 ATCC 33755 . prokMSA_id:071191 D13379 Halobacterium sodomense complete prokMSA_id:000613 D32081 Halobacterium AUS-1. prokMSA_id:000617 D32082 Halobacterium AUS-2. prokMSA_id:000615 D63572 Halorubrum distributum str. I-M JCM 9100. prokMSA_id:000626 D87972 Halorubrum vacuolatum str. M24 JCM 9060. prokMSA_id:000612 L00922 Halobacterium sp. str. Ch2 ACM 3911. prokMSA_id:042756 S70839 Halobacterium=halophilic Ch2 Genomic 1469 nt prokMSA_id:000625 U17364 Halorubrum saccharovorum JCM 8865 . prokMSA_id:000632 U17365 Halorubrum lacusprofundi JCM 8891 . prokMSA_id:000616 X82168 Halorubrum trapanicum NRC 34021 . prokMSA_id:000627 X82170 Halorubrum lacusprofundi ACAM 34 . 1.1.3.4.3.016 OTU 14 seqs prokMSA_id:066399 AF505664 haloarchaeon clone ZB-A5 prokMSA_id:066397 AF505666 haloarchaeon clone ZB-A7 prokMSA_id:066388 AF505676 haloarchaeon clone ZB-A17 prokMSA_id:066385 AF505677 haloarchaeon clone ZB-A18 prokMSA_id:056457 AF505687 haloarchaeon clone ZB-A31 prokMSA_id:066380 AF505688 haloarchaeon clone ZB-A32 prokMSA_id:066373 AF505690 haloarchaeon clone ZB-A34 prokMSA_id:066369 AF505693 haloarchaeon clone ZB-A37 prokMSA_id:066365 AF505699 haloarchaeon clone ZB-A43 prokMSA_id:066360 AF505704 haloarchaeon clone ZB-A49 prokMSA_id:066356 AF505708 haloarchaeon clone ZB-A54 prokMSA_id:066355 AF505710 haloarchaeon clone ZB-A57 prokMSA_id:066347 AF505717 haloarchaeon clone ZB-A67 prokMSA_id:066345 AF505719 haloarchaeon clone ZB-A69 1.1.3.4.3.017 OTU 1 seq prokMSA_id:066351 AF505712 haloarchaeon clone ZB-A61 1.1.3.4.3.018 OTU 2 seqs prokMSA_id:066368 AF505696 haloarchaeon clone ZB-A40 prokMSA_id:066354 AF505709 haloarchaeon clone ZB-A56 1.1.3.4.3.019 OTU 4 seqs prokMSA_id:066401 AF505662 haloarchaeon clone ZB-A3 prokMSA_id:066394 AF505670 haloarchaeon clone ZB-A11 prokMSA_id:066386 AF505679 haloarchaeon clone ZB-A21 prokMSA_id:066372 AF505692 haloarchaeon clone ZB-A36 1.1.3.4.3.020 OTU 1 seq prokMSA_id:066400 AF505663 haloarchaeon clone ZB-A4 1.1.3.4.3.999 poor quality 39 seqs prokMSA_id:048106 AF291159 Mixed culture haloarchaeon YE.LI-230 prokMSA_id:024366 AF291160 Mixed culture haloarchaeon CLI-248 prokMSA_id:020374 AF291161 Mixed culture haloarchaeon CLI-250 prokMSA_id:048984 AF291162 Mixed culture haloarchaeon CLI-257 prokMSA_id:022643 AF291163 Mixed culture haloarchaeon CLI-265 prokMSA_id:047743 AF291164 Mixed culture haloarchaeon CDI-271 prokMSA_id:045690 AF291167 Mixed culture haloarchaeon CDI-276 prokMSA_id:064098 AF477931 clone 2a-PML 22% pond prokMSA_id:064088 AF477942 clone 2-PML 31% pond prokMSA_id:074371 AF477944 clone 4-PML 31% pond prokMSA_id:064081 AF477946 'A215-UMH 22% pond' prokMSA_id:064082 AF477947 'AN201-UMH 22% pond' prokMSA_id:064079 AF477948 'A311-UMH 31% pond' prokMSA_id:064076 AF477949 'A315-UMH 31% pond' prokMSA_id:055641 AF477951 'A356-UMH 31% pond' prokMSA_id:064075 AF477952 'A363-UMH 31% pond' prokMSA_id:066389 AF505674 haloarchaeon clone ZB-A15 prokMSA_id:066255 AF506960 Halophilic 1SC5 prokMSA_id:066252 AF506962 Halophilic DH34 prokMSA_id:000621 AJ002943 Halorubrum SC1.2 str. SC1.2. prokMSA_id:000614 AJ002944 Halorubrum GSL5.48 str. GSL5.48. prokMSA_id:022600 AJ270240 Haloarchaeon str. T1.6 strain T1.6 prokMSA_id:052061 AJ270243 Haloarchaeon str. B2S.26 strain B2S.26 prokMSA_id:039652 AJ270244 Haloarchaeon str. BbpA.3 strain BbpA.3 prokMSA_id:038950 AJ270245 Haloarchaeon str. GluBr1.1 strain GluBr1.1 prokMSA_id:020273 AJ270247 Haloarchaeon str. Nh.5 strain Nh.5 prokMSA_id:021492 AJ270248 Haloarchaeon str. PW1.1 strain PW1.1 prokMSA_id:034463 AJ270249 Haloarchaeon str. PIG.8 strain PIG.8 prokMSA_id:043345 AJ270250 Haloarchaeon str. WB4E.8 strain WB4E.8 prokMSA_id:023129 AJ270251 Haloarchaeon str. 54R strain 54R prokMSA_id:052185 AJ276887 Halorubrum tebenquichense strain ALT6-92 prokMSA_id:071782 AJ307999 clone DIE41 prokMSA_id:073791 AJ308008 clone FCII19 prokMSA_id:040339 X53567 Halobacterium lacusprofundi part 1 prokMSA_id:050562 X53569 Halobacterium lacusprofundi part 3 prokMSA_id:026543 X53571 Halobacterium saccharovorum part 2 prokMSA_id:035023 X53572 Halobacterium saccharovorum part 3 prokMSA_id:000624 X82167 Halorubrum saccharovorum NCIMB 2081 . prokMSA_id:000618 X82169 Halorubrum sodomense str. RD-26 ATCC 33755 . 1.1.3.4.4 HB.HALOBIUM_SUBGROUP 79 seqs 1.1.3.4.4.001 OTU 58 seqs prokMSA_id:050435 AB074299 Halobacterium salinarum prokMSA_id:040871 AB074301 Halobacterium sp. NCIMB 733 prokMSA_id:023901 AB074565 Halobacterium sp. NCIMB 741 prokMSA_id:068649 AB081731 Halobacterium sp. JCM 9447 prokMSA_id:048009 AE004437 Halobacterium sp. NRC-1 complete genome prokMSA_id:032933 AE005128 Halobacterium sp. NRC-1 section 159 of 170 of the complete genome prokMSA_id:000635 AF110768 Halobacterium 9R str. 9R. prokMSA_id:047635 AF355101 Halobacterium sp. JP-6 prokMSA_id:055254 AF506939 haloarchaeon HC1 prokMSA_id:066275 AF506940 haloarchaeon HC12 prokMSA_id:055509 AF506944 haloarchaeon HC2 prokMSA_id:066271 AF506946 haloarchaeon HC27 prokMSA_id:066270 AF506947 haloarchaeon HC3 prokMSA_id:056193 AF506948 haloarchaeon HC30 prokMSA_id:066266 AF506949 haloarchaeon HC32 prokMSA_id:066267 AF506952 haloarchaeon HC38 prokMSA_id:066265 AF506953 haloarchaeon HC4 prokMSA_id:066263 AF506954 haloarchaeon HC5 prokMSA_id:066262 AF506956 haloarchaeon HC7 prokMSA_id:066258 AF506957 haloarchaeon HC8 prokMSA_id:056380 AH000908 H.cutirubrum cluster and Ala-tRNA complete; 23S 5' end prokMSA_id:044211 AJ270238 Haloarchaeon str. B1bra.5 strain B1bra.5 prokMSA_id:038000 AJ270239 Haloarchaeon str. BbpA.1 strain BbpA.1 prokMSA_id:071531 AJ278933 A145 prokMSA_id:073008 AJ278934 A148 prokMSA_id:021206 AJ278936 A153 prokMSA_id:022613 AJ278938 A157 prokMSA_id:069961 AJ278939 A174 prokMSA_id:053293 AJ278940 A175 prokMSA_id:052115 AJ308004 clone DIE4 prokMSA_id:055344 AJ319550 haloarchaeon clone Poland-10 prokMSA_id:064772 AJ319551 haloarchaeon clone Poland-12 prokMSA_id:055561 AJ319552 haloarchaeon clone Poland-15 prokMSA_id:064771 AJ319553 haloarchaeon clone Poland-17 prokMSA_id:064770 AJ319554 haloarchaeon clone Poland-1 prokMSA_id:064769 AJ319555 haloarchaeon clone Poland-2 prokMSA_id:064768 AJ319556 haloarchaeon clone Poland-22 prokMSA_id:064767 AJ319557 haloarchaeon clone Poland-3 prokMSA_id:064766 AJ319558 haloarchaeon clone Poland-4 prokMSA_id:064765 AJ319559 haloarchaeon clone Poland-6 prokMSA_id:064764 AJ319560 haloarchaeon clone Poland-7 prokMSA_id:064762 AJ319561 haloarchaeon clone Poland-9 prokMSA_id:039315 AJ344301 clone HW12 prokMSA_id:022533 AJ344302 clone HW16 prokMSA_id:032450 AJ344313 clone HW31 prokMSA_id:049755 AJ344319 clone HW56 prokMSA_id:018744 AJ420165 euryarchaeote clone PSPIHH28-27 prokMSA_id:046844 AJ420166 euryarchaeote clone PSPIMM28-20 prokMSA_id:041569 AJ420167 Halobacterium salinarum prokMSA_id:063193 AJ496185 Halobacterium salinarum strain DSM 3754T prokMSA_id:000640 D14127 Halobacterium sp. str. Y12. prokMSA_id:070968 D14127 Halobacterium sp. complete prokMSA_id:000641 K02971 Halobacterium cutirubrum str. clone lambda-Hc4. prokMSA_id:000634 M11583 Halobacterium halobium str. R1. prokMSA_id:000637 M38280 Halobacterium halobium. prokMSA_id:054099 NC_002607 Halobacterium sp. NRC-1 complete genome prokMSA_id:000636 U68538 Halobacterium salinarum str. E12. prokMSA_id:000633 X03407 Halobacterium halobium str. R1. 1.1.3.4.4.002 OTU 1 seq prokMSA_id:000639 AB012051 str. MSP9. 1.1.3.4.4.003 OTU 1 seq prokMSA_id:026302 AF211313 Halobacteriales MT14 1.1.3.4.4.004 OTU 1 seq prokMSA_id:037525 AF199372 D3.5-B 1.1.3.4.4.005 OTU 1 seq prokMSA_id:041147 AF211311 Halobacteriales MT15 1.1.3.4.4.006 OTU 1 seq prokMSA_id:049296 AJ347778 euryarchaeote clone ST-3K67A 1.1.3.4.4.007 OTU 1 seq prokMSA_id:066352 AF505713 haloarchaeon clone ZB-A62 1.1.3.4.4.008 OTU 1 seq prokMSA_id:066364 AF505700 haloarchaeon clone ZB-A44 1.1.3.4.4.009 OTU 1 seq prokMSA_id:076261 AY164326 haloarchaeon clone ULIA-33 1.1.3.4.4.999 poor quality 13 seqs prokMSA_id:066272 AF506938 haloarchaeon 2HC9 prokMSA_id:066274 AF506941 haloarchaeon HC14 prokMSA_id:066273 AF506942 haloarchaeon HC15 prokMSA_id:066269 AF506943 haloarchaeon HC18 prokMSA_id:066268 AF506950 haloarchaeon HC33 prokMSA_id:055559 AF506951 haloarchaeon HC37 prokMSA_id:000638 AJ000676 str. HB3-1. prokMSA_id:041317 AJ270235 Haloarchaeon str. 004.1 strain 004.1 prokMSA_id:033134 AJ270236 Haloarchaeon str. PW5.4 strain PW5.4 prokMSA_id:016446 AJ270237 Haloarchaeon str. WM2C.13 strain WM2C.13 prokMSA_id:052645 AJ291416 H1-K19 prokMSA_id:044347 AJ291417 H1-K16 prokMSA_id:000642 X92978 Halobacterium salinarium. 1.1.3.4.5 NTM.PHARAONIS 19 seqs 1.1.3.4.5.001 OTU 6 seqs prokMSA_id:066384 AF505678 haloarchaeon clone ZB-A20 prokMSA_id:066376 AF505685 haloarchaeon clone ZB-A27 prokMSA_id:066348 AF505715 haloarchaeon clone ZB-A65 prokMSA_id:070801 AJ308012 clone EMF51 prokMSA_id:027407 AJ344320 clone HW23 prokMSA_id:000643 D87971 Natronomonas pharaonis str. Gabara JCM 8858 . 1.1.3.4.5.002 OTU 2 seqs prokMSA_id:064113 AF477912 clone 63-UMH 8% pond prokMSA_id:064100 AF477926 clone 1-UMH 22% pond 1.1.3.4.5.003 OTU 1 seq prokMSA_id:066367 AF505697 haloarchaeon clone ZB-A41 1.1.3.4.5.004 OTU 1 seq prokMSA_id:066382 AF505681 haloarchaeon clone ZB-A23 1.1.3.4.5.999 poor quality 9 seqs prokMSA_id:046481 AJ270230 Haloarchaeon str. Nh.2 Nh.2 strain Nh.2 prokMSA_id:073294 AJ308005 clone EMF2 prokMSA_id:056234 AJ517877 clone mHK12.1 prokMSA_id:057397 AJ517879 clone mHK36.1 prokMSA_id:057392 AJ517890 clone mCMC38.5 prokMSA_id:057395 AJ517891 clone mCMC46.5 prokMSA_id:057391 AJ517892 clone mCMC46.6 prokMSA_id:057390 AJ517895 clone mOO44.2 prokMSA_id:057386 AJ517901 clone E10.1 1.1.3.4.6 NTC.AMYLOLYTICUS_SUBGROUP 101 seqs 1.1.3.4.6.010 OTU 2 seqs prokMSA_id:017936 AF015967 2C129 prokMSA_id:000658 AF015984 clone 2MT16. 1.1.3.4.6.011 OTU 1 seq prokMSA_id:000659 AF142876 clone DEEP-2. 1.1.3.4.6.014 OTU 7 seqs prokMSA_id:000649 AB012049 str. MSP1. prokMSA_id:000650 AB012052 str. MSP11. prokMSA_id:000651 AB012053 str. MSP12. prokMSA_id:000653 AB012055 str. MSP16. prokMSA_id:000654 AB012056 str. MSP17. prokMSA_id:000655 AB012057 str. MSP22. prokMSA_id:000656 AB012058 str. MSP23. 1.1.3.4.6.015 OTU 1 seq prokMSA_id:000652 AB012054 str. MSP14. 1.1.3.4.6.016 OTU 1 seq prokMSA_id:000645 AB009624 Halobacterium sp. str. arg-4. 1.1.3.4.6.017 OTU 1 seq prokMSA_id:018525 X92170 sp. Little Lake Magadi isolate 93dLM4 1.1.3.4.6.018 OTU 2 seqs prokMSA_id:029270 AJ344309 clone HW8 prokMSA_id:021201 AJ344311 clone HW88 1.1.3.4.6.021 OTU 2 seqs prokMSA_id:027978 AB073365 Halobacterium cutirubrum NCIMB 763 operon prokMSA_id:036299 AB073366 Halobacterium cutirubrum NCIMB 763 rrnB operon 1.1.3.4.6.022 OTU 2 seqs prokMSA_id:028138 AB049461 Natrialba sp. Tunisia HMg-25 complete prokMSA_id:036767 AB049462 Natrialba sp. Tunisia HMg-27 1.1.3.4.6.023 OTU 1 seq prokMSA_id:033887 X92171 sp. Lake Magadi isolate 82M4 1.1.3.4.6.024 OTU 1 seq prokMSA_id:037730 AF333759 Halobacteriaceae gen. sp. 56 1.1.3.4.6.025 OTU 1 seq prokMSA_id:046014 AJ278931 A016 clone A016 1.1.3.4.6.026 OTU 2 seqs prokMSA_id:049132 AJ344314 clone HW22 prokMSA_id:046771 AJ344315 clone HW25 1.1.3.4.6.030 OTU 60 seqs prokMSA_id:000665 AB004878 Haloterrigena turkmenica str. 4 VKM B-1734 . prokMSA_id:000660 AB005656 Natronobacterium tibetense str. GA33. prokMSA_id:024766 AB023426 Natrinema versiforme prokMSA_id:074440 AB045012 Natronobacterium sp. C231 prokMSA_id:021979 AB046875 Natrialba asiatica prokMSA_id:047016 AB046926 Natronorubrum sp. Wadi Natrun-19 prokMSA_id:028549 AB046927 Natronorubrum sp. Tenzan-10 prokMSA_id:051196 AF009601 Natronobacterium innermongoliae prokMSA_id:000667 AF015989 clone 2MT320. prokMSA_id:000647 AF027738 Halorubrum trapanicum NCMB 784. prokMSA_id:000646 AF115478 Natrinema thermotolerans str. PR 5. prokMSA_id:052324 AF251285 Natronococcus xinjiangense prokMSA_id:038317 AF251941 Natrialba aegyptiaca small subunit complete prokMSA_id:072475 AF262026 Natrialba hulunbeirensis AS1.1986 prokMSA_id:043132 AF333760 Halobacteriaceae gen. sp. 135 prokMSA_id:045943 AF367370 Natrinema sp. R-fish prokMSA_id:030847 AF424771 38B-1 prokMSA_id:032775 AF424774 41-1 prokMSA_id:040112 AF478471 Halobacteriaceae gen. sp. H1 prokMSA_id:066402 AF505661 haloarchaeon clone ZB-A2 prokMSA_id:066398 AF505665 haloarchaeon clone ZB-A6 prokMSA_id:066393 AF505668 haloarchaeon clone ZB-A9 prokMSA_id:066395 AF505669 haloarchaeon clone ZB-A10 prokMSA_id:066391 AF505672 haloarchaeon clone ZB-A13 prokMSA_id:066383 AF505682 haloarchaeon clone ZB-A24 prokMSA_id:066378 AF505683 haloarchaeon clone ZB-A25 prokMSA_id:066377 AF505684 haloarchaeon clone ZB-A26 prokMSA_id:066375 AF505689 haloarchaeon clone ZB-A33 prokMSA_id:066371 AF505695 haloarchaeon clone ZB-A39 prokMSA_id:066362 AF505701 haloarchaeon clone ZB-A45 prokMSA_id:066359 AF505702 haloarchaeon clone ZB-A46 prokMSA_id:066361 AF505703 haloarchaeon clone ZB-A47 prokMSA_id:066353 AF505711 haloarchaeon clone ZB-A58 prokMSA_id:066350 AF505714 haloarchaeon clone ZB-A63 prokMSA_id:066349 AF505716 haloarchaeon clone ZB-A66 prokMSA_id:000669 AJ001376 Natronobacterium wudunaoensis str. Y21. prokMSA_id:058361 AJ003193 Natronobacterium chagannuoerensis prokMSA_id:000671 AJ004806 Natronobacterium chahannaoensis str. C112. prokMSA_id:045727 AJ308002 clone DIE25 prokMSA_id:033874 AJ344305 clone HW14 prokMSA_id:024443 AJ344310 clone HW13 prokMSA_id:058987 AY055733 Haloterrigena thermotolerans prokMSA_id:072038 D14123 Natrialba asiatica prokMSA_id:000673 D14123 str. 172P1. prokMSA_id:073832 D14124 Natrialba asiatica prokMSA_id:000670 D14124 str. B1T. prokMSA_id:072482 D14125 Halobacterium trapanicum complete prokMSA_id:000644 D14125 Halorubrum trapanicum NCIMB 767. prokMSA_id:000666 D14126 str. L-11. prokMSA_id:074122 D14126 Halophilic archaeum complete prokMSA_id:000675 D43628 Natronococcus amylolyticus str. Ah-36 JCM 9655 . prokMSA_id:034918 D87970 Natronobacterium gregoryi prokMSA_id:000672 D88256 Natrialba ATCC 43988 str. SSL1 ATCC 43988. prokMSA_id:000668 X72495 Natrialba magadii NCIMB 2190 . prokMSA_id:032934 X92172 sp. Lake Magadi isolate 89M4 prokMSA_id:032045 X92173 sp. Little Lake Magadi isolate 93lLM4 prokMSA_id:043283 X92174 sp. Lake Natron isolate 98NT4 prokMSA_id:042055 X92175 sp. Lake Magadi isolate 86M4 prokMSA_id:000657 Y14028 Natronorubrum bangense str. A33 AS 1.1984 . prokMSA_id:000674 Z28378 Natronococcus occultus ATCC 43101 . 1.1.3.4.6.031 OTU 1 seq prokMSA_id:066381 AF505680 haloarchaeon clone ZB-A22 1.1.3.4.6.999 poor quality 16 seqs prokMSA_id:018356 AF211308 Halobacteriales MT13 prokMSA_id:025841 AF472595 Sambhar Salt Lake HA1 prokMSA_id:032929 AF472596 Sambhar Salt Lake HA6 prokMSA_id:066387 AF505675 haloarchaeon clone ZB-A16 prokMSA_id:000648 AJ002945 unnamed organism. prokMSA_id:000662 AJ002946 unnamed organism. prokMSA_id:000664 AJ002947 Natrinema pellirubrum NCIMB 786 . prokMSA_id:000663 AJ002948 Natrinema pallidum NCIMB 784. prokMSA_id:000661 AJ002949 Natrinema pallidum NCIMB 777 . prokMSA_id:029581 AJ270241 Haloarchaeon str. PIG.5 strain PIG.5 prokMSA_id:070933 AJ291423 S3-K5 prokMSA_id:073093 AJ291424 S3-K25 prokMSA_id:071720 AJ291426 S3-K15 prokMSA_id:073286 AJ291427 S3-K14 prokMSA_id:071303 AJ308000 clone DIE43 prokMSA_id:073613 AJ308013 clone EMF53 1.1.3.4.7 HC.MORRHUAE_SUBGROUP 29 seqs 1.1.3.4.7.001 OTU 9 seqs prokMSA_id:017584 AB074302 Halobacterium sp. NCIMB 734 prokMSA_id:038435 AB074303 Halobacterium sp. NCIMB 765 operon prokMSA_id:027023 AB074304 Halobacterium sp. NCIMB 765 rrnB operon prokMSA_id:052396 AJ344307 clone HW50 prokMSA_id:039472 AJ420376 Halococcus dombrowskii strain H4 prokMSA_id:000686 D11106 Halococcus morrhuae NRC 16008. prokMSA_id:000688 D63786 Halorubrum trapanicum JCM 8979. prokMSA_id:000689 X00662 Halococcus morrhuae str. LD.3.1 C.B. van Niel ATCC 17082 . prokMSA_id:000687 X72588 Halococcus morrhuae. 1.1.3.4.7.002 OTU 5 seqs prokMSA_id:000685 AB004876 Halococcus saccharolyticus ATCC 49257 . prokMSA_id:000678 AB004877 Halococcus salifodinae str. Blp DSM 8989 . prokMSA_id:000684 AJ131458 Halococcus salifodinae str. BG 2/2. prokMSA_id:000679 AJ238897 Halococcus salifodinae str. Br3. prokMSA_id:073359 Z28387 Halococcus sp. 1.1.3.4.7.003 OTU 1 seq prokMSA_id:017995 AB074300 Halobacterium sp. NCIMB 718 1.1.3.4.7.004 OTU 1 seq prokMSA_id:027020 AF435112 Halococcus tibetense 1.1.3.4.7.005 OTU 1 seq prokMSA_id:066390 AF505673 haloarchaeon clone ZB-A14 1.1.3.4.7.999 poor quality 12 seqs prokMSA_id:064095 AF477932 clone 3a-PML 22% pond prokMSA_id:064089 AF477941 clone 1-PML 31% pond prokMSA_id:000680 AJ245422 Halococcus salifodinae str. N1. prokMSA_id:000681 AJ245423 Halococcus salifodinae str. N1. prokMSA_id:000682 AJ245424 Halococcus salifodinae str. H2. prokMSA_id:000683 AJ245425 Halococcus salifodinae str. H2. prokMSA_id:026231 AJ291418 H1-K9 prokMSA_id:021319 AJ291421 H6-K5 prokMSA_id:046598 AJ291422 H6-K6 prokMSA_id:071268 AJ291425 S3-K9 prokMSA_id:000677 Z28379 Halococcus sp. str. Br3. prokMSA_id:000676 Z28387 Halococcus salifodinae str. Blp DSM 8989 . 1.1.3.4.8 HAR.VALLISMORTIS_SUBGROUP 93 seqs 1.1.3.4.8.003 OTU 44 seqs prokMSA_id:000702 AB000563 Haloarcula aidinensis str. B-2. prokMSA_id:000704 AB010964 Haloarcula sp. str. 801030/1. prokMSA_id:000695 AB010965 Haloarcula sp. str. 801030/1. prokMSA_id:035152 AB049044 pPCA10.1 prokMSA_id:022898 AB049045 pPCA13.5 prokMSA_id:019666 AB049046 pPCA14.16 prokMSA_id:030500 AB049047 pPCA14.17 prokMSA_id:032359 AB049048 pPCA14.18 prokMSA_id:026900 AB049049 pPCA14.41 prokMSA_id:026826 AB049050 pPCA17.1 prokMSA_id:046679 AB052975 pPACMA-E prokMSA_id:027847 AB052976 pPACMA-F prokMSA_id:033729 AB052977 pPACMA-G prokMSA_id:050694 AB052978 pPACMA-H prokMSA_id:036981 AB052980 pPACMA-J prokMSA_id:040916 AB052981 pPACMA-K prokMSA_id:027356 AB052982 pPACMA-L prokMSA_id:041737 AB052987 pPACMA-S prokMSA_id:040037 AB052988 pPACMA-T prokMSA_id:046921 AB052989 pPACMA-V prokMSA_id:051848 AB052993 pPACMA-U prokMSA_id:027305 AB074561 Halobacterium sp. NCIMB 714 operon prokMSA_id:023836 AB074562 Halobacterium sp. NCIMB 714 rrnB operon prokMSA_id:018654 AB074563 Halobacterium sp. NCIMB 720 operon prokMSA_id:039389 AB074564 Halobacterium sp. NCIMB 720 rrnB operon prokMSA_id:061002 AB090167 Haloarcula hispanica operon prokMSA_id:061001 AB090168 Haloarcula hispanica rrnB operon prokMSA_id:000694 AF034619 Haloarcula marismortui. prokMSA_id:000701 AF034620 Haloarcula marismortui. prokMSA_id:066256 AF506961 Halophilic 2DH35 prokMSA_id:034701 AJ308006 clone FCIII4 prokMSA_id:070419 AJ308010 clone DIE42 prokMSA_id:070196 AJ308011 clone EMF54 prokMSA_id:029919 AJ308015 clone FC2 prokMSA_id:024110 AJ308018 clone EMF9 prokMSA_id:000699 D14129 Haloarcula sinaiiensis ATCC 33800. prokMSA_id:073483 D14129 Haloarcula sinaiiensis complete prokMSA_id:071110 D14130 Haloarcula sinaiiensis complete prokMSA_id:000698 D14130 Haloarcula sinaiiensis ATCC 33800. prokMSA_id:000703 D50849 Haloarcula argentinensis. prokMSA_id:000709 D50851 Haloarcula vallismortis. prokMSA_id:000708 U17593 Haloarcula vallismortis AT