1 ARCHAEA 1169 seqs 1.1 EURYARCHAEOTA 874 seqs 1.1.1 METHANOCOCCALES 24 seqs 1.1.1.1 MC.JANNASCHII_GROUP 20 seqs 1.1.1.1.2104 OTU 1 seq prokMSA_id:18 clone ABS12 1.1.1.1.2141 OTU 5 seqs prokMSA_id:27 clone ST1-16 prokMSA_id:28 clone S15-2 prokMSA_id:29 clone S15-4 prokMSA_id:30 clone S15-6 prokMSA_id:31 clone S30-7 1.1.1.1.2147 OTU 3 seqs prokMSA_id:69659 clone G26_C49 prokMSA_id:69745 clone G26_C45 prokMSA_id:73911 clone G26_C5 1.1.1.1.2154 OTU 1 seq prokMSA_id:52158 euryarchaeote MERTZ_21CM_297 1.1.1.1.2196 OTU 1 seq prokMSA_id:29288 archaebacteria clone ABS3 1.1.1.1.2202 OTU 1 seq prokMSA_id:48249 Methanothermococcus okinawensis 1.1.1.1.2216 OTU 1 seq prokMSA_id:73906 SAGMA-F 1.1.1.1.2231 OTU 1 seq prokMSA_id:21 clone pMC2A5 1.1.1.1.2233 OTU 1 seq prokMSA_id:26 Methanococcus thermolithotrophicus str. SN-1 DSM 2095 1.1.1.1.2236 OTU 1 seq prokMSA_id:54381 clone RS0-24 1.1.1.1.2271 OTU 1 seq prokMSA_id:2 clone ABS9 1.1.1.1.2277 OTU 1 seq prokMSA_id:26100 SAGMA-E 1.1.1.1.2282 OTU 1 seq prokMSA_id:4 clone pISA18 1.1.1.1.2283 OTU 1 seq prokMSA_id:6 clone Rot20 1.1.1.2 MC.MARIPALUDIS_GROUP 4 seqs 1.1.1.2.2191 OTU 3 seqs prokMSA_id:37 Methanococcus vannielii str. EY33 prokMSA_id:42 Methanococcus maripaludis str. D. NONE prokMSA_id:43 Methanococcus maripaludis str. LL 1.1.1.2.2281 OTU 1 seq prokMSA_id:36765 Methanococcus sp. P2F9701a 1.1.2 METHANOBACTERIALES 129 seqs 1.1.2.1 MT.FERVIDUS_GROUP 10 seqs 1.1.2.1.2261 OTU 1 seq prokMSA_id:46 Methanothermus fervidus 1.1.2.1.2266 OTU 1 seq prokMSA_id:48 clone pBRKC82 1.1.2.1.2268 OTU 1 seq prokMSA_id:49 unnamed organism 1.1.2.1.2276 OTU 1 seq prokMSA_id:50 clone KTK 9A 1.1.2.1.2279 OTU 1 seq prokMSA_id:52 clone KTK 28A 1.1.2.1.2280 OTU 1 seq prokMSA_id:54 clone pMC2A24 1.1.2.1.2304 OTU 4 seqs prokMSA_id:51 clone KTK 18A. AJ133623 prokMSA_id:18294 SA2 group euryarchaeote clone ST-12K24A prokMSA_id:33564 SA2 group euryarchaeote clone ST-12K22A AJ347789 prokMSA_id:39923 Euryarchaeote J4.75-24 1.1.2.2 METHANOBACTERIUM_GROUP 119 seqs 1.1.2.2.1 MB.FORMICICUM_SUBGROUP 78 seqs 1.1.2.2.1.2080 OTU 3 seqs prokMSA_id:58 clone TA1f2 prokMSA_id:37573 BURTON2_A prokMSA_id:45897 BURTON20_A 1.1.2.2.1.2082 OTU 1 seq prokMSA_id:48957 SAGMA-K 1.1.2.2.1.2088 OTU 1 seq prokMSA_id:24205 methanogenic endosymbiont of Nyctotherus ovalis 1.1.2.2.1.2098 OTU 1 seq prokMSA_id:16893 SAGMA-J 1.1.2.2.1.2110 OTU 3 seqs prokMSA_id:118 Methanobrevibacter smithii. AF054208 prokMSA_id:125 Methanobrevibacter sp. str. HO DSM 11977 prokMSA_id:95844 Methanobrevibacter sp. ZA-10 AY196673 1.1.2.2.1.2116 OTU 1 seq prokMSA_id:21835 Euryarchaeote J4.75-15 1.1.2.2.1.2119 OTU 6 seqs prokMSA_id:201 clone WCHA1-57 prokMSA_id:27098 39-2 AF424769 prokMSA_id:32110 69-1 prokMSA_id:51118 46-1 AF424764 prokMSA_id:52425 44A-1 prokMSA_id:62886 euryarchaeote clone:KuA13 1.1.2.2.1.2124 OTU 2 seqs prokMSA_id:45914 euryarchaeote clone P3-Ar-10 prokMSA_id:51931 euryarchaeote clone P3-Ar-23 1.1.2.2.1.2128 OTU 1 seq prokMSA_id:200 clone VAL68 1.1.2.2.1.2145 OTU 1 seq prokMSA_id:75 Methanobacterium formicicum DSM 3636 1.1.2.2.1.2162 OTU 1 seq prokMSA_id:57 Methanosphaera stadtmanae str. MCB-3 DSM 3091 1.1.2.2.1.2165 OTU 7 seqs prokMSA_id:58991 19b-9 clone 19b-9 prokMSA_id:59050 19c-50 clone 19c-50 prokMSA_id:59052 19c-18 clone 19c-18 prokMSA_id:59057 19c-10 clone 19c-10 prokMSA_id:59071 19b-41 clone 19b-41 prokMSA_id:59085 19b-2 clone 19b-2 prokMSA_id:59086 19b-1 clone 19b-1 1.1.2.2.1.2185 OTU 1 seq prokMSA_id:69892 TA1c9 1.1.2.2.1.2206 OTU 5 seqs prokMSA_id:17811 SA1 group euryarchaeote clone ST-12K11A prokMSA_id:24075 SA1 group euryarchaeote clone ST-3K26A prokMSA_id:32440 SA1 group euryarchaeote clone ST-12K28A prokMSA_id:46891 SA1 group euryarchaeote clone ST-3K65A AJ347781 prokMSA_id:52466 SA1 group euryarchaeote clone ST-3K1A 1.1.2.2.1.2241 OTU 5 seqs prokMSA_id:77 Methanobrevibacter smithii str. PS DSM 861 prokMSA_id:122 Methanobrevibacter smithii str. ALI prokMSA_id:123 Methanobrevibacter smithii str. B181 DSM 11975 prokMSA_id:130 Methanobrevibacter sp. str. SM9 prokMSA_id:29783 rumen methanogen M6 1.1.2.2.1.2247 OTU 2 seqs prokMSA_id:29032 SM1K20 prokMSA_id:52505 SM1 1.1.2.2.1.2255 OTU 2 seqs prokMSA_id:33106 SA1 group euryarchaeote clone ST-12K10A prokMSA_id:41854 SA1 group euryarchaeote clone ST-3K54A 1.1.2.2.1.2272 OTU 28 seqs prokMSA_id:79 Methanobacterium bryantii str. RiH2. AF028688 prokMSA_id:86 Methanobrevibacter sp. str. GS DSM 11979 prokMSA_id:114 Methanobrevibacter sp. str. NT7 prokMSA_id:115 Methanobrevibacter sp. str. MB-9 prokMSA_id:127 Methanobrevibacter sp. str. SH DSM 11976. U55240 prokMSA_id:128 Methanobrevibacter sp. str. RT prokMSA_id:138 Methanobrevibacter cuticularis str. RFM-1 DSM 11139 . U41095 prokMSA_id:139 Methanobrevibacter filiformis str. RFM-3 DSM 11501 prokMSA_id:141 Methanobrevibacter HW3. AB026925 prokMSA_id:150 Methanobrevibacter curvatus str. RFM-2 DSM 11111 prokMSA_id:152 Methanobrevibacter RsW2. AB026915 prokMSA_id:153 Methanobrevibacter RsI17. AB026919 prokMSA_id:154 Methanobrevibacter LHD2. AB026920 prokMSA_id:158 Methanobrevibacter HW2. AB026924 prokMSA_id:175 Methanobrevibacter RsI12. AB026918 prokMSA_id:21086 rumen methanogen 15 prokMSA_id:22694 Methanobrevibacter sp. ATM AF242652 prokMSA_id:24414 Methanobrevibacter arboriphilus prokMSA_id:38084 rumen methanogen 956 prokMSA_id:39249 Methanobrevibacter sp. HW23 AB033293 prokMSA_id:39741 Methanobrevibacter sp. LRsD4 AB033290 prokMSA_id:43504 Methanobrevibacter sp. RsW3 AB033291 prokMSA_id:84255 euryarchaeote clone 15ar16 AY251026 prokMSA_id:92357 Methanobacterium sp. 8-2 AY350742 prokMSA_id:95916 Methanobrevibacter ruminantium AY196666 prokMSA_id:96099 Methanobacterium bryantii strain MOHG AY196658 prokMSA_id:97471 Methanobacterium bryantii strain MOH AY196657 prokMSA_id:97554 Methanobacterium formicicum AY196659 1.1.2.2.1.2284 OTU 1 seq prokMSA_id:44789 Euryarchaeote J4.75-12 1.1.2.2.1.2285 OTU 6 seqs prokMSA_id:203 clone vadinDC06 prokMSA_id:18599 Methanobacterium curvum prokMSA_id:44183 Methanobacterium congolense prokMSA_id:77878 Methanobacteriaceae clone AEC 3 M71 prokMSA_id:77966 Methanobacteriaceae clone AEC 2 M46 prokMSA_id:78121 Methanobacteriaceae clone AMC 3 M14 1.1.2.2.2 MB.THERMOAUTOTROPHICUM_SUBGROUP 41 seqs 1.1.2.2.2.2073 OTU 3 seqs prokMSA_id:237 unnamed organism prokMSA_id:58504 clone:pHAuA-5 prokMSA_id:78558 clone:OHKA2.33 1.1.2.2.2.2173 OTU 22 seqs prokMSA_id:216 Methanothermobacter thermophilus str. M VKM B-1786 prokMSA_id:217 Methanobacterium wolfei. X89406 prokMSA_id:219 Methanobacterium thermoautotrophicum str. CSM3 prokMSA_id:221 Methanobacterium thermoautotrophicum str. FF3 prokMSA_id:222 Methanobacterium thermoautotrophicum str. CB12 OCM 36 prokMSA_id:223 Methanobacterium thermoautotrophicum str. Marburg prokMSA_id:225 Methanothermobacter thermoflex str. IDZ VKM B-1963 prokMSA_id:226 Methanobacterium thermoautotrophicum str. FF1 prokMSA_id:227 Methanobacterium thermoautotrophicum str. ZH3 DSM 9446 prokMSA_id:229 Methanobacterium thermoautotrophicum str. CB12 ATCC 43574. N prokMSA_id:233 Methanobacterium thermoautotrophicum str. KHT-2 prokMSA_id:234 Methanobacterium thermoautotrophicum str. THF prokMSA_id:235 Methanobacterium thermoautotrophicum str. HN4 prokMSA_id:236 Methanothermobacter defluvii str. ADZ VKM B-1962 prokMSA_id:238 Methanobacterium thermoautotrophicum str. delta H prokMSA_id:239 Methanobacterium thermoautotrophicum str. delta H prokMSA_id:241 Methanobacterium thermoautotrophicum str. Z-245 DSM 3720 prokMSA_id:242 Methanobacterium thermoautotrophicum str. delta H prokMSA_id:251 Methanobacterium thermoautotrophicum str. FTF prokMSA_id:67146 clone:LCB prokMSA_id:67147 clone:LCA prokMSA_id:81334 Methanothermobacter wolfeii 1.1.2.2.2.2183 OTU 6 seqs prokMSA_id:18834 TA1b12 AF134385 prokMSA_id:48616 BA2e8 AF134383 prokMSA_id:53542 AT425_ArB7 prokMSA_id:93665 clone GZfosARC_25D1 AY324375 prokMSA_id:93719 clone GZfosARC_1C11 AY324374 prokMSA_id:93742 clone BR34ARC_C03 AY324378 1.1.2.2.2.2235 OTU 1 seq prokMSA_id:249 clone pMC1A4 1.1.2.2.2.2257 OTU 5 seqs prokMSA_id:243 clone TA1a9 prokMSA_id:20341 TA1a6 prokMSA_id:35808 BA1a2 prokMSA_id:36790 BA1b1 prokMSA_id:94129 clone F17.1ARC_A01 AY324382 1.1.2.2.2.2292 OTU 4 seqs prokMSA_id:245 unnamed organism. AF119124 prokMSA_id:248 unnamed organism. AF119140 prokMSA_id:56753 clone FZ2aA62 prokMSA_id:56767 clone FZ1aA168 1.1.3 METHANOMICROBACTERIA_AND_RELATIVES 641 seqs 1.1.3.1 METHANOMICROBIALES 182 seqs 1.1.3.1.1 MCU.BOURGENSE_SUBGROUP 133 seqs 1.1.3.1.1.2078 OTU 1 seq prokMSA_id:30524 marine pN1-2 1.1.3.1.1.2084 OTU 1 seq prokMSA_id:300 clone SYA-133 1.1.3.1.1.2089 OTU 1 seq prokMSA_id:303 clone SYA-45 1.1.3.1.1.2094 OTU 1 seq prokMSA_id:314 Methanoculleus MAB3 str. MAB3 1.1.3.1.1.2093 OTU 1 seq prokMSA_id:312 Methanoculleus MAB1 str. MAB1 1.1.3.1.1.2102 OTU 5 seqs prokMSA_id:306 str. DCM875 prokMSA_id:28555 euryarchaeote AT-200_29 prokMSA_id:45211 euryarchaeote ME-450_38 prokMSA_id:50813 marine AEGEAN_60 prokMSA_id:84991 clone:pCIRA-15 1.1.3.1.1.2105 OTU 1 seq prokMSA_id:34486 euryarchaeote VAL147 clone VAL147 1.1.3.1.1.2121 OTU 1 seq prokMSA_id:18762 clone TDC-AR4 1.1.3.1.1.2131 OTU 2 seqs prokMSA_id:253 clone 2C25 prokMSA_id:255 clone 2MT8 1.1.3.1.1.2161 OTU 16 seqs prokMSA_id:263 clone 2MT120 prokMSA_id:264 Methanogenium ACE1_A prokMSA_id:265 Methanogenium organophilum prokMSA_id:266 Methanogenium frigidum OCM 469. AF009219 prokMSA_id:24448 2C169 prokMSA_id:26952 2C130 prokMSA_id:31414 O23E2 prokMSA_id:49083 O23C7 prokMSA_id:72379 O23D1 AF220336 prokMSA_id:72381 euryarchaeote EHB156 AF374279 prokMSA_id:72572 euryarchaeote EHB158 AF374277 prokMSA_id:74196 euryarchaeote EHB154 AF374278 prokMSA_id:78486 Methanogenium sp. clone SB13 prokMSA_id:78517 Methanogenium sp. clone LH14 prokMSA_id:78642 Methanogenium sp. clone LH23 prokMSA_id:78953 Methanogenium sp. clone SB18 1.1.3.1.1.2171 OTU 1 seq prokMSA_id:26253 AT425_ArD10 1.1.3.1.1.2188 OTU 1 seq prokMSA_id:260 Methanoplanus petrolearius SEBR 4847 1.1.3.1.1.2228 OTU 8 seqs prokMSA_id:298 unnamed organism prokMSA_id:299 Methanocalculus halotolerans SEBR 4845 prokMSA_id:19259 Methanocalculus sp. K1F9705b prokMSA_id:41198 Methanocalculus sp. K1F9705c prokMSA_id:42125 Methanocalculus taiwanense strain P2F9704a prokMSA_id:45899 Methanocalculus halotolerans strain P2F9705 prokMSA_id:74785 Methanocalculus sp. O1F9702c prokMSA_id:83974 Methanocalculus chunshungensis 1.1.3.1.1.2234 OTU 2 seqs prokMSA_id:257 Methanomicrobium mobile str. BP DSM 1539 prokMSA_id:50770 rumen methanogen Hole9 1.1.3.1.1.2243 OTU 1 seq prokMSA_id:37655 2C174 1.1.3.1.1.2244 OTU 2 seqs prokMSA_id:258 clone BURTON24_A prokMSA_id:261 clone ACE4_A 1.1.3.1.1.2245 OTU 1 seq prokMSA_id:252 Methanoplanus limicola str. M3 DSM 2279 1.1.3.1.1.2248 OTU 1 seq prokMSA_id:254 clone 2C84 1.1.3.1.1.2250 OTU 1 seq prokMSA_id:256 Methanoplanus endosymbiosus str. MC1 GDVogels DSM 3599 1.1.3.1.1.2274 OTU 52 seqs prokMSA_id:267 Methanoculleus palmolei str. INSLUZ DSM 4273 prokMSA_id:294 Methanoculleus marisnigri str. JR1 ATCC 35101 prokMSA_id:295 Methanoculleus marisnigri str. CoCam prokMSA_id:296 unnamed organism. AF157519 prokMSA_id:304 Methanoculleus thermophilicus str. TCI DSM 3915 prokMSA_id:308 Methanoculleus olentangyi str. RC/ER OCM 52 . AF095270 prokMSA_id:309 clone 2C87 prokMSA_id:310 clone 2MT196. AF015985 prokMSA_id:311 unnamed organism. AF157518 prokMSA_id:316 Methanoculleus bourgense str. MS2 ATCC 43281 . NONE prokMSA_id:317 Methanoculleus bourgensis str. MS2. AF095269 prokMSA_id:318 Methanoculleus olentangyi str. RC/ER ATCC 35293 . NONE prokMSA_id:16936 clone GW60-13-38 AY062220 prokMSA_id:26465 anaerobic methanogenic E15-1 prokMSA_id:26720 Methanoculleus chikugoensis strain:MG62 prokMSA_id:28508 isolate MUAHR 10 AF376797 prokMSA_id:29601 anaerobic methanogenic E30-5 AJ244301 prokMSA_id:30915 clone GW70-20-6 AY062235 prokMSA_id:33933 anaerobic methanogenic E15-3 prokMSA_id:44000 clone GW60-13-4 AY062222 prokMSA_id:44094 clone GW60-13-1 AY062218 prokMSA_id:44296 anaerobic methanogenic E15-10 prokMSA_id:44379 clone GW70-10-35 AY062230 prokMSA_id:45011 clone GW60-13-3 AY062221 prokMSA_id:48761 clone GW70-10-10 AY062225 prokMSA_id:55959 clone DERR12 prokMSA_id:58532 clone LK28 AJ493110 prokMSA_id:58533 clone LK49 AJ493107 prokMSA_id:58534 clone LK31 AJ493109 prokMSA_id:58537 clone LK26 AJ493103 prokMSA_id:58538 clone LK50 AJ493104 prokMSA_id:63713 clone DERS7 prokMSA_id:63714 clone DERS6 AJ412784 prokMSA_id:63723 clone DERS4 prokMSA_id:63724 clone DERS5 AJ412783 prokMSA_id:63729 clone DERR10 prokMSA_id:67141 clone:LCD prokMSA_id:69299 clone LK16 AJ493099 prokMSA_id:69300 Methanoculleus oldenburgensis prokMSA_id:69442 clone LK23 AJ493108 prokMSA_id:69616 clone LK9 AJ493097 prokMSA_id:69714 clone LK13 AJ493095 prokMSA_id:70145 Methanoculleus submarinus prokMSA_id:70246 clone LK14 AJ493102 prokMSA_id:71365 clone LK4 AJ493098 prokMSA_id:73005 clone LK45 AJ493096 prokMSA_id:73658 clone LK15 AJ493093 prokMSA_id:82879 euryarchaeote clone:AA01 prokMSA_id:84703 clone AR2_8 prokMSA_id:91502 Methanoculleus thermophilicus AB065297 prokMSA_id:93802 clone CM20 AY368461 prokMSA_id:98731 Methanoculleus bourgensis AY196674 1.1.3.1.1.2286 OTU 33 seqs prokMSA_id:269 clone WCHD3-07 prokMSA_id:16528 AM-10 AB056013 prokMSA_id:27240 OS-23 AB056048 prokMSA_id:28545 19-1 prokMSA_id:29292 euryarchaeote r-5_06C AF473903 prokMSA_id:30469 OS-16 AB056041 prokMSA_id:32200 OS-8 AB056033 prokMSA_id:37119 57-1 prokMSA_id:39739 OS-13 AB056038 prokMSA_id:50440 Toluene-degrading methanogenic consortium M1 prokMSA_id:55255 Methanoculleus palmolei clone 2a AF509447 prokMSA_id:56516 Methanoculleus palmolei clone 12a AF509439 prokMSA_id:62887 Methanomicrobiales clone:KuA12 prokMSA_id:66206 Methanocorpusculum bavaricum clone 50i AF509456 prokMSA_id:66210 Methanocorpusculum bavaricum clone 51i AF509457 prokMSA_id:66213 Methanoculleus palmolei clone 44i AF509453 prokMSA_id:66215 Methanoculleus palmolei clone 45i AF509454 prokMSA_id:66220 Methanoculleus palmolei clone 1a AF509444 prokMSA_id:66225 Methanospirillum hungatei clone 10e AF509437 prokMSA_id:66889 clone SHC-88 AJ312019 prokMSA_id:77921 Methanomicrobiales clone AMC 1 M21 AJ459899 prokMSA_id:81190 methanogenic clone FenH- AJ548953 prokMSA_id:81349 methanogenic clone FenW- AJ548949 prokMSA_id:81531 methanogenic clone FenR- AJ548950 prokMSA_id:81538 methanogenic clone FenK- AJ548952 prokMSA_id:81750 methanogenic clone FenI- AJ548947 prokMSA_id:81899 methanogenic clone FenZ- AJ548946 prokMSA_id:82322 methanogenic clone FenH1- AJ548948 prokMSA_id:84116 clone AF6 AY092163 prokMSA_id:85604 euryarchaeote clone 15ar18 prokMSA_id:85882 clone AF7 AY092165 prokMSA_id:90496 clone Stme2 AY294415 prokMSA_id:90666 clone Stme4 AY294409 1.1.3.1.2 MF.TATIONIS_SUBGROUP 4 seqs 1.1.3.1.2.2225 OTU 4 seqs prokMSA_id:328 Methanofollis liminatans str. GKZPZ DSM 4140 prokMSA_id:329 Methanofollis liminatans DSM 10196 prokMSA_id:22804 Methanofollis sp. N2F9704 prokMSA_id:96483 Methanofollis liminatans AY196677 1.1.3.1.3 MSP.HUNGATEI_SUBGROUP 10 seqs 1.1.3.1.3.2103 OTU 1 seq prokMSA_id:338 unnamed organism 1.1.3.1.3.2146 OTU 1 seq prokMSA_id:345 clone SYA-50 1.1.3.1.3.2168 OTU 3 seqs prokMSA_id:340 clone MNt1 prokMSA_id:341 clone MNt2 prokMSA_id:342 clone MPn1 1.1.3.1.3.2172 OTU 4 seqs prokMSA_id:336 Methanospirillum hungatei str. JF1 DSM 864 prokMSA_id:343 Methanospirillum sp prokMSA_id:43804 clone AC43 AJ288312 prokMSA_id:97855 Methanospirillum hungatei AY196683 1.1.3.1.3.2232 OTU 1 seq prokMSA_id:344 clone SYA-77 1.1.3.1.4 MCR.PARVUM_SUBGROUP 35 seqs 1.1.3.1.4.2077 OTU 18 seqs prokMSA_id:347 symbiont of Trimyema compressa. M96976 prokMSA_id:348 symbiont of archaeobacterial symbiont of Trimyema sp. Z16412 prokMSA_id:349 symbiont of archaeobacterial symbiont of Metopus contortus prokMSA_id:25498 isolate MUAHR 6 AF376793 prokMSA_id:34398 isolate MUAHR 4 AF376791 prokMSA_id:82638 clone CARB_AR1_1 AY239517 prokMSA_id:84012 clone AR2_6 AY231361 prokMSA_id:84058 clone CARB_AR1_4 AY239520 prokMSA_id:84212 clone AR1R2_3 prokMSA_id:84307 clone AR1R2_1 AY231351 prokMSA_id:85040 clone AR2_10 AY231364 prokMSA_id:85920 clone CARB_AR1_6 AY239522 prokMSA_id:86048 clone AR1R2_4 prokMSA_id:86278 clone AR1_5 AY231355 prokMSA_id:92492 ZAR20 AY341317 prokMSA_id:92733 ZAR11 AY341307 prokMSA_id:92887 ZAR7 AY341315 prokMSA_id:93046 ZAR8 AY341316 1.1.3.1.4.2278 OTU 17 seqs prokMSA_id:350 Methanocorpusculum labreanum str. Z ATCC 43576 . NONE prokMSA_id:352 Methanocorpusculum sinense str. China Z DSM 4274 . AF095268 prokMSA_id:353 Methanocorpusculum labreanum str. Z DSM 4855 . AF095267 prokMSA_id:356 Methanocorpusculum parvum str. XII ATCC 43721 . M59147 prokMSA_id:31702 equine intestinal archaeal sp. DL11 clone DL11 prokMSA_id:39103 equine intestinal clone:YT28 prokMSA_id:39974 Methanocorpusculum parvum strain IF9601b prokMSA_id:66890 clone SHC-268 prokMSA_id:71599 C1_R002 prokMSA_id:75506 methanogenic symbiont PA127 AB062302 prokMSA_id:75579 methanogenic symbiont PA123 AB062305 prokMSA_id:76282 methanogenic symbiont ST152 AB062304 prokMSA_id:76790 methanogenic symbiont ST131 AB062301 prokMSA_id:83370 Methanocorpusculum sp. MSP prokMSA_id:85117 Methanocorpusculum labreanum prokMSA_id:86427 Methanocorpusculum parvum prokMSA_id:97068 Methanocorpusculum bavaricum AY196676 1.1.3.2 METHANOSARCINALES 152 seqs 1.1.3.2.1 METHANOSARCINA_AND_RELATIVES 122 seqs 1.1.3.2.1.2067 OTU 1 seq prokMSA_id:35246 Euryarchaeote DJ3.25-13 1.1.3.2.1.2072 OTU 1 seq prokMSA_id:470 clone S30-29 1.1.3.2.1.2095 OTU 1 seq prokMSA_id:422 symbiont of Plagiopyla frontata 1.1.3.2.1.2099 OTU 1 seq prokMSA_id:20092 RSS50-7 clone RSS50-7 1.1.3.2.1.2101 OTU 1 seq prokMSA_id:475 str. GS1-A 1.1.3.2.1.2113 OTU 1 seq prokMSA_id:73685 C1_R046 1.1.3.2.1.2125 OTU 2 seqs prokMSA_id:20184 Green Bay ferromanganous micronodule ARB5 prokMSA_id:74581 Green Bay ferromanganous micronodule ARC3 1.1.3.2.1.2127 OTU 7 seqs prokMSA_id:472 Methanosarcina siciliae str. C2J prokMSA_id:490 Methanosarcina barkeri str. MS DSM 800 prokMSA_id:491 Methanosarcina barkeri str. Sar prokMSA_id:498 clone vadinCA25 prokMSA_id:514 Methanosarcina barkeri str. CM1 prokMSA_id:67692 Methanosarcina acetivorans str. C2A section 99 of 534 of the prokMSA_id:67693 Methanosarcina acetivorans str. C2A section 529 of 534 of th 1.1.3.2.1.2133 OTU 1 seq prokMSA_id:427 clone BURTON-12 1.1.3.2.1.2134 OTU 1 seq prokMSA_id:428 clone pMC2A203 1.1.3.2.1.2139 OTU 1 seq prokMSA_id:429 clone pMC2A33 1.1.3.2.1.2143 OTU 6 seqs prokMSA_id:380 clone vadinDA05 prokMSA_id:476 Methanosarcina FR str. FR prokMSA_id:67139 clone:LCE prokMSA_id:83898 Methanosarcina sp. MS prokMSA_id:85506 Methanosarcina sp. MM prokMSA_id:88792 Methanosarcina sp. JL01 AF519802 1.1.3.2.1.2158 OTU 1 seq prokMSA_id:442 clone pBRKC129 1.1.3.2.1.2159 OTU 1 seq prokMSA_id:443 clone S15-27 1.1.3.2.1.2160 OTU 1 seq prokMSA_id:45908 Euryarchaeote D4.75-4 1.1.3.2.1.2201 OTU 30 seqs prokMSA_id:444 clone TA1a4. AF134384 prokMSA_id:20168 At425_ArD2 AY053472 prokMSA_id:21515 AT425_ArE12 prokMSA_id:35354 C1_R048 prokMSA_id:41219 isolate SB-17a1D3 prokMSA_id:59039 19b-31 clone 19b-31 AJ294899 prokMSA_id:59046 19c-45 clone 19c-45 AJ294893 prokMSA_id:59047 19c-49 clone 19c-49 prokMSA_id:59048 19c-36 clone 19c-36 AJ294892 prokMSA_id:59068 19b-46 clone 19b-46 prokMSA_id:59070 19b-38 clone 19b-38 AJ294868 prokMSA_id:59077 19b-24 clone 19b-24 prokMSA_id:59079 19b-23 clone 19b-23 AJ294860 prokMSA_id:59083 19b-7 clone 19b-7 AJ294855 prokMSA_id:69806 CS_R012 prokMSA_id:70991 isolate Eel-36a2A1 prokMSA_id:71136 isolate SB-24a1A12 prokMSA_id:72394 isolate SB-17a1B11 prokMSA_id:72945 isolate Eel-36a2E1 prokMSA_id:73069 C1_R004 prokMSA_id:74281 isolate Eel-36a2A5 prokMSA_id:74364 C1_R019 prokMSA_id:92926 clone 626-27 AY345181 prokMSA_id:93178 Methanosarcinales clone AMOS4A_4113_B05 AY323218 prokMSA_id:94105 Methanosarcinales clone AMOS4A_4113_H05 AY323223 prokMSA_id:95246 Methanosarcinales clone GoM GC234 021R AY211695 prokMSA_id:95425 Methanosarcinales clone GoM GC234 520R AY211701 prokMSA_id:97124 Methanosarcinales clone GoM GC234 607R AY211704 prokMSA_id:98308 Methanosarcinales clone GoM GC234 019R AY211694 prokMSA_id:98490 Methanosarcinales clone GoM GC185 503R AY211685 1.1.3.2.1.2215 OTU 2 seqs prokMSA_id:68322 clone G72_C12 prokMSA_id:68326 clone G72_C1 1.1.3.2.1.2223 OTU 7 seqs prokMSA_id:373 Methanosarcina mazei str. C16 DSM 2053 prokMSA_id:374 Methanosarcina mazei str. SarPi prokMSA_id:439 Methanosarcina mazei str. Go1 prokMSA_id:18470 Methanosarcina mazei strain O1M9704b prokMSA_id:18827 Methanosarcina mazei strain O1M9701 prokMSA_id:30939 Methanosarcina mazei prokMSA_id:84434 Methanosarcina sp. MT 1.1.3.2.1.2246 OTU 4 seqs prokMSA_id:36504 isolate Eel-36a2B9 prokMSA_id:69820 isolate Eel-36a2A4 prokMSA_id:72991 isolate SB-24a1H2 prokMSA_id:73643 isolate SB-24a1C12 1.1.3.2.1.2252 OTU 1 seq prokMSA_id:403 Methanosarcina semesii str. MD1 1.1.3.2.1.2269 OTU 26 seqs prokMSA_id:473 clone MOf1. AB009822 prokMSA_id:474 clone MPn4 prokMSA_id:516 Methanomicrococcus blatticolus str. PA prokMSA_id:16838 euryarchaeote clone P1-Ar-10 AF293508 prokMSA_id:18310 euryarchaeote clone P1-Ar-15 AF293513 prokMSA_id:18593 euryarchaeote clone P1-Ar-26 AF293533 prokMSA_id:18969 euryarchaeote clone P1-Ar-6 prokMSA_id:20977 euryarchaeote clone P3-Ar-24 prokMSA_id:21448 euryarchaeote clone P1-Ar-4 prokMSA_id:21910 euryarchaeote clone P1-Ar-17 AF293526 prokMSA_id:23609 euryarchaeote clone P1-Ar-1 prokMSA_id:32888 euryarchaeote clone P1-Ar-3 prokMSA_id:33973 euryarchaeote clone P1-Ar-28 AF293535 prokMSA_id:35091 euryarchaeote clone P1-Ar-19 AF293527 prokMSA_id:35561 euryarchaeote clone P1-Ar-14 AF293512 prokMSA_id:36045 euryarchaeote clone P1-Ar-16 prokMSA_id:39139 euryarchaeote clone P1-Ar-7 prokMSA_id:40656 euryarchaeote clone P1-Ar-25 AF293532 prokMSA_id:44162 euryarchaeote clone P1-Ar-2 AF293514 prokMSA_id:45534 euryarchaeote clone P1-Ar-13 AF293511 prokMSA_id:46877 euryarchaeote clone P1-Ar-5 prokMSA_id:48239 euryarchaeote clone P1-Ar-27 AF293534 prokMSA_id:50358 euryarchaeote clone P1-Ar-8 AF293520 prokMSA_id:50674 euryarchaeote clone P4b-Ar-18 prokMSA_id:51355 euryarchaeote clone P1-Ar-30 AF293537 prokMSA_id:95892 Methanimicrococcus blatticola AY196680 1.1.3.2.1.2275 OTU 1 seq prokMSA_id:42447 2MT1 1.1.3.2.1.2287 OTU 7 seqs prokMSA_id:437 clone 2MT7. AF015991 prokMSA_id:438 clone BA2H11fin. AF134393 prokMSA_id:69934 isolate SB-24a1B11 prokMSA_id:73952 isolate SB-24a1F10 prokMSA_id:92823 clone 626-29 AY345183 prokMSA_id:93364 clone BR34ARC_C05 AY324379 prokMSA_id:95517 Methanosarcinales clone GoM GC185 517R AY211687 1.1.3.2.1.2291 OTU 10 seqs prokMSA_id:426 Methanococcoides burtonii DSM 6242 prokMSA_id:431 Methanomethylovorans hollandica str. DMS1. AF120163 prokMSA_id:40857 isolate SB-24a1C2 prokMSA_id:44725 Methanococcoides sp. strain NaT1 prokMSA_id:48567 Methanomethylovorans victoriae strain TM prokMSA_id:62890 Methanomethylovorans sp. clone:KuA6 prokMSA_id:66897 clone SHB-143 prokMSA_id:70903 isolate Eel-36a2H11 prokMSA_id:83403 clone:pCIRA-K AB095121 prokMSA_id:83794 Methanomethylovorans sp. ZB 1.1.3.2.1.2299 OTU 7 seqs prokMSA_id:456 clone ARC46 prokMSA_id:493 clone ARC9 prokMSA_id:494 clone ARC31 prokMSA_id:495 clone ARC45 prokMSA_id:496 clone ARC63 prokMSA_id:497 clone ARC64 prokMSA_id:36837 rumen methanogen 2 1.1.3.2.2 METHANOSAETA 30 seqs 1.1.3.2.2.2068 OTU 1 seq prokMSA_id:23885 anaerobic methanogenic E15-7 1.1.3.2.2.2074 OTU 1 seq prokMSA_id:78578 clone MB-12 1.1.3.2.2.2079 OTU 1 seq prokMSA_id:72917 O23F7 1.1.3.2.2.2085 OTU 1 seq prokMSA_id:20919 clone AS17-04 1.1.3.2.2.2107 OTU 5 seqs prokMSA_id:537 clone ARR2 prokMSA_id:546 clone EtOH6 prokMSA_id:573 clone ARR18 prokMSA_id:37876 archeobacteria Clone EtOH2 prokMSA_id:41805 clone AS00-12 1.1.3.2.2.2129 OTU 5 seqs prokMSA_id:538 clone SJC-11b prokMSA_id:19676 TA01 prokMSA_id:49668 TA04 prokMSA_id:62894 Methanosaeta sp. clone:KuA1 prokMSA_id:66894 clone SHB-23 1.1.3.2.2.2130 OTU 5 seqs prokMSA_id:532 Methanosaeta WCHD3-03 prokMSA_id:539 clone SJC-125a prokMSA_id:25452 120A-4 prokMSA_id:32447 61-2 prokMSA_id:86454 euryarchaeote clone 15ar14 1.1.3.2.2.2140 OTU 1 seq prokMSA_id:27475 Methanosaeta sp. Clone A1 1.1.3.2.2.2153 OTU 2 seqs prokMSA_id:22948 Toluene-degrading methanogenic consortium M2 prokMSA_id:67140 clone:LCC 1.1.3.2.2.2155 OTU 1 seq prokMSA_id:549 clone Rot10 1.1.3.2.2.2156 OTU 1 seq prokMSA_id:44079 clone RS0-17 1.1.3.2.2.2157 OTU 1 seq prokMSA_id:560 clone S15-20 1.1.3.2.2.2177 OTU 2 seqs prokMSA_id:533 clone WCHD3-34 prokMSA_id:41595 euryarchaeote clone AS04-16 1.1.3.2.2.2273 OTU 1 seq prokMSA_id:554 clone VAL33-1 1.1.3.2.2.2294 OTU 1 seq prokMSA_id:526 unnamed organism 1.1.3.2.2.2296 OTU 1 seq prokMSA_id:62889 Methanosarcinales clone:KuA7 1.1.3.4 HALOPHILIC_ARCHAEA 199 seqs 1.1.3.4.1 HBM.GOMORRENSE_SUBGROUP 5 seqs 1.1.3.4.1.2290 OTU 3 seqs prokMSA_id:596 clone DEEP-8 prokMSA_id:597 clone DEEP-7 prokMSA_id:598 clone DEEP-6 1.1.3.4.1.2295 OTU 1 seq prokMSA_id:595 clone pBRKC22 1.1.3.4.1.2297 OTU 1 seq prokMSA_id:599 clone DEEP-5 1.1.3.4.2 HF.VOLCANII_SUBGROUP 30 seqs 1.1.3.4.2.2112 OTU 3 seqs prokMSA_id:24020 clone HW10 prokMSA_id:46041 clone HW3 prokMSA_id:50299 clone HW5 1.1.3.4.2.2120 OTU 2 seqs prokMSA_id:39318 Unknown PCR fragment of an archaeal microorganism prokMSA_id:43013 Unknown organism 1.1.3.4.2.2167 OTU 13 seqs prokMSA_id:600 Haloferax mediterranei ATCC 33500 prokMSA_id:603 Haloferax denitrificans ATCC 35960 prokMSA_id:604 Haloferax volcanii str. DS-2 ATCC 29605 prokMSA_id:606 clone 2C82 prokMSA_id:608 Haloferax D1227 str. D1227 prokMSA_id:610 Haloferax gibbonsii ATCC 33959 prokMSA_id:25672 Haloferax volcanii prokMSA_id:29381 2MT310 prokMSA_id:41199 2MT103 AF015982 prokMSA_id:47309 Haloferax alexandrinus complete prokMSA_id:71072 Haloferax denitrificans complete prokMSA_id:74464 Haloferax gibbonsii complete prokMSA_id:89487 Haloarchaeon 8AHG AY292395 1.1.3.4.2.2174 OTU 2 seqs prokMSA_id:35866 ORGANIC5_A prokMSA_id:37132 ORGANIC1_A 1.1.3.4.2.2203 OTU 2 seqs prokMSA_id:611 Haloferax sp. str. Aa 2.2 prokMSA_id:45692 Haloferax alicantei 1.1.3.4.2.2218 OTU 2 seqs prokMSA_id:609 Halogeometricum borinquense str. PR 3 ATCC 700274 prokMSA_id:42829 Halophilic PalaeII strain PalaeII 1.1.3.4.2.2260 OTU 1 seq prokMSA_id:602 clone DEEP-9 1.1.3.4.2.2262 OTU 1 seq prokMSA_id:605 clone 1MT315 1.1.3.4.2.2307 OTU 4 seqs prokMSA_id:39274 JDS-1 prokMSA_id:62506 euryarchaeote clone LA1-A10 prokMSA_id:64078 prokaryote isolate DGGE Band 506-ICM 15% pond AF477953 prokMSA_id:71057 prokaryote isolate DGGE Band 508-ICM 15% pond AF477954 1.1.3.4.3 HR.SACCHAROVORUM_SUBGROUP 27 seqs 1.1.3.4.3.2100 OTU 1 seq prokMSA_id:615 Halorubrum distributum str. I-M JCM 9100 1.1.3.4.3.2106 OTU 3 seqs prokMSA_id:23696 clone HW107 prokMSA_id:53794 A151 prokMSA_id:72249 A154 1.1.3.4.3.2148 OTU 10 seqs prokMSA_id:618 Halorubrum sodomense str. RD-26 ATCC 33755 . X82169 prokMSA_id:624 Halorubrum saccharovorum NCIMB 2081 . X82167 prokMSA_id:625 Halorubrum saccharovorum JCM 8865 prokMSA_id:626 Halorubrum vacuolatum str. M24 JCM 9060 prokMSA_id:627 Halorubrum lacusprofundi ACAM 34 prokMSA_id:632 Halorubrum lacusprofundi JCM 8891 prokMSA_id:23129 Haloarchaeon str. 54R strain 54R AJ270251 prokMSA_id:35867 Haloarchaeon str. MAlk006.3 strain MAlk006.3 prokMSA_id:45762 Halorubrum tibetense AF435111 prokMSA_id:57545 Halorubrum tibetense strain 8W8 AY149598 1.1.3.4.3.2254 OTU 8 seqs prokMSA_id:612 Halobacterium sp. str. Ch2 ACM 3911 prokMSA_id:613 Halobacterium AUS-1 prokMSA_id:616 Halorubrum trapanicum NRC 34021 prokMSA_id:617 Halobacterium AUS-2 prokMSA_id:622 Halorubrum sodomense str. RD-26 ATCC 33755 prokMSA_id:42756 Halobacterium=halophilic Ch2 Genomic 1469 nt prokMSA_id:43177 Halophilic NaxosII strain NaxosII prokMSA_id:71191 Halobacterium sodomense complete 1.1.3.4.3.2289 OTU 1 seq prokMSA_id:619 clone pBRKC112 1.1.3.4.3.2300 OTU 1 seq prokMSA_id:620 clone pBRKC101 1.1.3.4.3.2301 OTU 1 seq prokMSA_id:623 Halorubrum saccharovorum NCIMB 2081 1.1.3.4.3.2305 OTU 1 seq prokMSA_id:628 clone pBRKC128 1.1.3.4.3.2306 OTU 1 seq prokMSA_id:629 clone pBRKC125 1.1.3.4.4 HB.HALOBIUM_SUBGROUP 29 seqs 1.1.3.4.4.2175 OTU 25 seqs prokMSA_id:633 Halobacterium halobium str. R1 prokMSA_id:634 Halobacterium halobium str. R1 prokMSA_id:635 Halobacterium 9R str. 9R prokMSA_id:636 Halobacterium salinarum str. E12 prokMSA_id:637 Halobacterium halobium prokMSA_id:640 Halobacterium sp. str. Y12 prokMSA_id:641 Halobacterium cutirubrum str. clone lambda-Hc4 prokMSA_id:23901 Halobacterium sp. NCIMB 741 prokMSA_id:32933 Halobacterium sp. NRC-1 section 159 of 170 of the complete g prokMSA_id:38000 Haloarchaeon str. BbpA.1 strain BbpA.1 prokMSA_id:40871 Halobacterium sp. NCIMB 733 AB074301 prokMSA_id:44211 Haloarchaeon str. B1bra.5 strain B1bra.5 prokMSA_id:47635 Halobacterium sp. JP-6 prokMSA_id:48009 Halobacterium sp. NRC-1 complete genome AE004437 prokMSA_id:50435 Halobacterium salinarum prokMSA_id:54099 Halobacterium sp. NRC-1 complete genome NC_002607 prokMSA_id:56380 H.cutirubrum cluster and Ala-tRNA complete; 23S 5' end prokMSA_id:63193 Halobacterium salinarum strain DSM 3754T prokMSA_id:68649 Halobacterium sp. JCM 9447 AB081731 prokMSA_id:70968 Halobacterium sp. complete prokMSA_id:81508 Halobacterium sp. A1 prokMSA_id:82712 Halobacterium sp. HM13 AY232300 prokMSA_id:83852 Halobacterium sp. HM01 AY232297 prokMSA_id:83927 Halobacterium sp. HM02 AY232298 prokMSA_id:86046 Halobacterium sp. HM11 AY232299 1.1.3.4.4.2211 OTU 1 seq prokMSA_id:37525 D3.5-B 1.1.3.4.4.2217 OTU 1 seq prokMSA_id:41147 Halobacteriales MT15 1.1.3.4.4.2222 OTU 1 seq prokMSA_id:49296 euryarchaeote clone ST-3K67A 1.1.3.4.4.2267 OTU 1 seq prokMSA_id:26302 Halobacteriales MT14 1.1.3.4.5 NTM.PHARAONIS 10 seqs 1.1.3.4.5.2210 OTU 10 seqs prokMSA_id:643 Natronomonas pharaonis str. Gabara JCM 8858 prokMSA_id:27407 clone HW23 prokMSA_id:56234 clone mHK12.1 AJ517877 prokMSA_id:57386 clone E10.1 AJ517901 prokMSA_id:57390 clone mOO44.2 AJ517895 prokMSA_id:57391 clone mCMC46.6 AJ517892 prokMSA_id:57392 clone mCMC38.5 AJ517890 prokMSA_id:57395 clone mCMC46.5 AJ517891 prokMSA_id:57397 clone mHK36.1 AJ517879 prokMSA_id:70801 clone EMF51 1.1.3.4.6 NTC.AMYLOLYTICUS_SUBGROUP 67 seqs 1.1.3.4.6.2065 OTU 1 seq prokMSA_id:46014 A016 clone A016 1.1.3.4.6.2081 OTU 8 seqs prokMSA_id:639 str. MSP9. AB012051 prokMSA_id:649 str. MSP1 prokMSA_id:650 str. MSP11 prokMSA_id:651 str. MSP12 prokMSA_id:653 str. MSP16 prokMSA_id:654 str. MSP17 prokMSA_id:655 str. MSP22 prokMSA_id:656 str. MSP23 1.1.3.4.6.2086 OTU 1 seq prokMSA_id:37730 Halobacteriaceae gen. sp. 56 1.1.3.4.6.2091 OTU 1 seq prokMSA_id:33887 sp. Lake Magadi isolate 82M4 1.1.3.4.6.2108 OTU 2 seqs prokMSA_id:21201 clone HW88 prokMSA_id:29270 clone HW8 1.1.3.4.6.2136 OTU 3 seqs prokMSA_id:30847 38B-1 prokMSA_id:32775 41-1 prokMSA_id:34918 Natronobacterium gregoryi 1.1.3.4.6.2137 OTU 6 seqs prokMSA_id:644 Halorubrum trapanicum NCIMB 767 prokMSA_id:647 Halorubrum trapanicum NCMB 784 prokMSA_id:666 str. L-11 prokMSA_id:45943 Natrinema sp. R-fish prokMSA_id:72482 Halobacterium trapanicum complete prokMSA_id:74122 Halophilic archaeum complete 1.1.3.4.6.2142 OTU 2 seqs prokMSA_id:27020 Halococcus tibetense AF435112 prokMSA_id:66381 haloarchaeon clone ZB-A22 1.1.3.4.6.2163 OTU 1 seq prokMSA_id:645 Halobacterium sp. str. arg-4 1.1.3.4.6.2176 OTU 1 seq prokMSA_id:659 clone DEEP-2 1.1.3.4.6.2180 OTU 2 seqs prokMSA_id:27978 Halobacterium cutirubrum NCIMB 763 operon AB073365 prokMSA_id:36299 Halobacterium cutirubrum NCIMB 763 rrnB operon 1.1.3.4.6.2197 OTU 1 seq prokMSA_id:18525 sp. Little Lake Magadi isolate 93dLM4 1.1.3.4.6.2205 OTU 2 seqs prokMSA_id:46771 clone HW25 prokMSA_id:49132 clone HW22 1.1.3.4.6.2207 OTU 2 seqs prokMSA_id:658 clone 2MT16 prokMSA_id:17936 2C129 1.1.3.4.6.2213 OTU 34 seqs prokMSA_id:646 Natrinema thermotolerans str. PR 5 prokMSA_id:657 Natronorubrum bangense str. A33 AS 1.1984 prokMSA_id:660 Natronobacterium tibetense str. GA33 prokMSA_id:665 Haloterrigena turkmenica str. 4 VKM B-1734 prokMSA_id:668 Natrialba magadii NCIMB 2190 prokMSA_id:669 Natronobacterium wudunaoensis str. Y21 prokMSA_id:670 str. B1T prokMSA_id:671 Natronobacterium chahannaoensis str. C112 prokMSA_id:672 Natrialba ATCC 43988 str. SSL1 ATCC 43988 prokMSA_id:673 str. 172P1 prokMSA_id:674 Natronococcus occultus ATCC 43101 prokMSA_id:675 Natronococcus amylolyticus str. Ah-36 JCM 9655 prokMSA_id:21979 Natrialba asiatica prokMSA_id:24766 Natrinema versiforme prokMSA_id:28138 Natrialba sp. Tunisia HMg-25 complete prokMSA_id:28549 Natronorubrum sp. Tenzan-10 prokMSA_id:32045 sp. Little Lake Magadi isolate 93lLM4 prokMSA_id:32934 sp. Lake Magadi isolate 89M4 prokMSA_id:36767 Natrialba sp. Tunisia HMg-27 prokMSA_id:38317 Natrialba aegyptiaca complete prokMSA_id:40112 Halobacteriaceae gen. sp. H1 prokMSA_id:42055 sp. Lake Magadi isolate 86M4 prokMSA_id:43132 Halobacteriaceae gen. sp. 135 prokMSA_id:43283 sp. Lake Natron isolate 98NT4 prokMSA_id:47016 Natronorubrum sp. Wadi Natrun-19 prokMSA_id:51196 Natronobacterium innermongoliae prokMSA_id:52324 Natronococcus xinjiangense prokMSA_id:58361 Natronobacterium chagannuoerensis prokMSA_id:58987 Haloterrigena thermotolerans prokMSA_id:72038 Natrialba asiatica prokMSA_id:72475 Natrialba hulunbeirensis AS1.1986 prokMSA_id:73832 Natrialba asiatica prokMSA_id:81102 Natrinema ajinwuensis prokMSA_id:83240 Natrinema sp. HM06 1.1.3.4.7 HC.MORRHUAE_SUBGROUP 15 seqs 1.1.3.4.7.2189 OTU 5 seqs prokMSA_id:678 Halococcus salifodinae str. Blp DSM 8989 prokMSA_id:679 Halococcus salifodinae str. Br3 prokMSA_id:684 Halococcus salifodinae str. BG 2/2 prokMSA_id:685 Halococcus saccharolyticus ATCC 49257 prokMSA_id:73359 Halococcus sp 1.1.3.4.7.2200 OTU 10 seqs prokMSA_id:686 Halococcus morrhuae NRC 16008 prokMSA_id:687 Halococcus morrhuae prokMSA_id:688 Halorubrum trapanicum JCM 8979 prokMSA_id:689 Halococcus morrhuae str. LD.3.1 C.B. van Niel ATCC 17082 prokMSA_id:17584 Halobacterium sp. NCIMB 734 prokMSA_id:27023 Halobacterium sp. NCIMB 765 rrnB operon prokMSA_id:38435 Halobacterium sp. NCIMB 765 operon prokMSA_id:39472 Halococcus dombrowskii strain H4 prokMSA_id:52396 clone HW50 AJ344307 prokMSA_id:83880 Halococcus qingdaogense complete 1.1.3.4.8 HAR.VALLISMORTIS_SUBGROUP 16 seqs 1.1.3.4.8.2064 OTU 1 seq prokMSA_id:690 Haloarcula mukohataei 1.1.3.4.8.2066 OTU 2 seqs prokMSA_id:691 str. MSP8. AB012050 prokMSA_id:692 str. MSP41 1.1.3.4.8.2069 OTU 1 seq prokMSA_id:696 Halobacter utahensis str. AX-2 1.1.3.4.8.2111 OTU 5 seqs prokMSA_id:20446 Halosimplex carlsbadense A AF320478 prokMSA_id:21614 Halosimplex carlsbadense B AF320479 prokMSA_id:84278 Halosimplex carlsbadense rrnB operon prokMSA_id:85089 Halosimplex carlsbadense operon genes 23S complete and prokMSA_id:85668 Halosimplex carlsbadense rrnB operon genes tRNA-Ala 23S comp 1.1.3.4.8.2115 OTU 3 seqs prokMSA_id:18167 marine euryarchaeote DH148-Y19 prokMSA_id:34968 marine euryarchaeote DH148-Y15 prokMSA_id:51102 marine euryarchaeote DH148-Y16 1.1.3.4.8.2135 OTU 3 seqs prokMSA_id:47411 Halosimplex carlsbadense C prokMSA_id:83805 Halosimplex carlsbadense operon prokMSA_id:86270 Halosimplex carlsbadense rrnC operon genes tRNA-Ala 23S comp 1.1.3.4.8.2256 OTU 1 seq prokMSA_id:73223 clone EMF3 1.1.3.5 THERMOPLASMALES_AND_RELATIVES 84 seqs 1.1.3.5.1 TPL.ACIDOPHILUM_SUBGROUP 72 seqs 1.1.3.5.1.2071 OTU 1 seq prokMSA_id:716 str. DCM3921 1.1.3.5.1.2096 OTU 1 seq prokMSA_id:43890 clone HTA-H9 1.1.3.5.1.2118 OTU 8 seqs prokMSA_id:20250 112D prokMSA_id:24419 113C prokMSA_id:29379 73A prokMSA_id:31891 66D prokMSA_id:34934 101B prokMSA_id:38604 71A AF268634 prokMSA_id:41358 Ar26 prokMSA_id:54629 60B 1.1.3.5.1.2122 OTU 1 seq prokMSA_id:23572 euryarchaeote ME-450_P9 1.1.3.5.1.2123 OTU 1 seq prokMSA_id:53752 euryarchaeote ME-450_30 1.1.3.5.1.2132 OTU 7 seqs prokMSA_id:727 clone ABS23 prokMSA_id:23326 clone RS300-12 prokMSA_id:26892 archaebacteria clone ARR19 AJ227932 prokMSA_id:45554 archaebacteria clone ARR16 AJ227929 prokMSA_id:48711 clone AS08-17 prokMSA_id:49712 clone AS17-30 prokMSA_id:74688 clone AS08-11 1.1.3.5.1.2164 OTU 5 seqs prokMSA_id:712 clone WCHD3-33 prokMSA_id:722 clone WCHD3-02 prokMSA_id:33637 clone HTA-C7 prokMSA_id:45960 33-1 prokMSA_id:62881 euryarchaeote clone:KuA16 1.1.3.5.1.2166 OTU 1 seq prokMSA_id:710 Picrophilus oshimae str. KAW2/2 DSM 9789 1.1.3.5.1.2169 OTU 1 seq prokMSA_id:713 clone SB95-72 1.1.3.5.1.2170 OTU 1 seq prokMSA_id:714 clone KTK 4A 1.1.3.5.1.2178 OTU 6 seqs prokMSA_id:721 Thermoplasma acidophilum str. 122-1B2 prokMSA_id:27173 Thermoplasma volcanium prokMSA_id:46145 Thermoplasma volcanium complete genome NC_002689 prokMSA_id:47351 Thermoplasma volcanium strain GSS1 prokMSA_id:47977 Thermoplasma acidophilum complete genome NC_002578 prokMSA_id:68998 Thermoplasma volcanium genomic complete section 6/6 AP000996 1.1.3.5.1.2179 OTU 1 seq prokMSA_id:36228 clone archaeap1 1.1.3.5.1.2186 OTU 2 seqs prokMSA_id:16489 SC38 AF225458 prokMSA_id:71237 clone ARCP1-60 1.1.3.5.1.2192 OTU 2 seqs prokMSA_id:34273 rumen M2 prokMSA_id:52339 rumen M7 1.1.3.5.1.2194 OTU 1 seq prokMSA_id:52811 maize root ZmrA19 1.1.3.5.1.2198 OTU 1 seq prokMSA_id:58156 clone AS1 1.1.3.5.1.2204 OTU 1 seq prokMSA_id:63282 clone ARCP1-30 1.1.3.5.1.2227 OTU 4 seqs prokMSA_id:720 Ferromonas metallovorans str. Y prokMSA_id:29649 MS14 prokMSA_id:65352 Ferroplasma sp. MT17 prokMSA_id:85217 Ferroplasma acidiphilum strain DR1 1.1.3.5.1.2229 OTU 1 seq prokMSA_id:22294 Crenarchaeote SRI-298 1.1.3.5.1.2239 OTU 1 seq prokMSA_id:32461 clone A10 1.1.3.5.1.2249 OTU 1 seq prokMSA_id:724 clone vadinCA11 1.1.3.5.1.2251 OTU 1 seq prokMSA_id:725 clone SCALE-3 1.1.3.5.1.2253 OTU 7 seqs prokMSA_id:16713 euryarchaeote clone P4b-Ar-7 AF293504 prokMSA_id:30521 euryarchaeote clone P4b-Ar-10 AF293482 prokMSA_id:45098 euryarchaeote clone P4b-Ar-19 AF293491 prokMSA_id:74993 archaeal symbiont PA201 prokMSA_id:76146 archaeal symbiont PA204 prokMSA_id:76154 archaeal symbiont PA203 prokMSA_id:76707 archaeal symbiont PA202 1.1.3.5.1.2258 OTU 1 seq prokMSA_id:30004 61D 1.1.3.5.1.2265 OTU 13 seqs prokMSA_id:14 clone VC2.1 Arc13. AF068820 prokMSA_id:15 clone pMC2A10 prokMSA_id:719 clone pSSMCA108 prokMSA_id:732 clone pISA42 prokMSA_id:30970 pPACMA-W prokMSA_id:35429 pPACMA-M prokMSA_id:41367 pPACMA-P prokMSA_id:55306 clone pEPR719 AF526962 prokMSA_id:56356 clone G26_C56 AF356635 prokMSA_id:63649 clone pEPR159 AF526964 prokMSA_id:63650 clone pEPR193 prokMSA_id:63654 clone pEPR707 AF526961 prokMSA_id:68328 clone G26_C73 AF356637 1.1.3.5.1.2270 OTU 2 seqs prokMSA_id:723 clone vadinDC79 prokMSA_id:44971 rumen M1 1.1.3.5.2 ENV.SBAR16_SUBGROUP 10 seqs 1.1.3.5.2.2087 OTU 1 seq prokMSA_id:86464 euryarchaeote clone: pCIRA110 1.1.3.5.2.2109 OTU 2 seqs prokMSA_id:733 Santa Barbara Channel clone SBAR16 prokMSA_id:36345 euryarchaeote SB95-35 1.1.3.5.2.2190 OTU 1 seq prokMSA_id:48775 euryarchaeote AM-20A_123 1.1.3.5.2.2303 OTU 6 seqs prokMSA_id:734 coastal surface waters picoplankton from Oregon clone OARB prokMSA_id:27739 euryarchaeote MERTZ_21CM_5 prokMSA_id:88553 euryarchaeote 96C-131-17 AY288386 prokMSA_id:90085 euryarchaeote 96C-55-10 AY288390 prokMSA_id:90329 euryarchaeote 96C-55-08 AY288393 prokMSA_id:93343 clone BSA4-89m AY360483 1.1.3.5.3 ENV.25-7_SUBGROUP 2 seqs 1.1.3.5.3.2208 OTU 2 seqs prokMSA_id:736 Santa Barbara Channel clone SBAR1A prokMSA_id:21548 marine AEGEAN_58 1.1.3.6 ARCHAEOGLOBALES 24 seqs 1.1.3.6.2083 OTU 1 seq prokMSA_id:25153 AT425_ArB9 1.1.3.6.2138 OTU 12 seqs prokMSA_id:740 Archaeoglobus veneficus str. SNP6 DSM 11195 prokMSA_id:743 Archaeoglobus fulgidus str. VC-16 DSM 4304 . X05567 prokMSA_id:744 Archaeoglobus fulgidus. AE000782 prokMSA_id:750 clone VC2.1 Arc2 prokMSA_id:751 VC2.1 Arc4 complete prokMSA_id:755 Archaeoglobus fulgidus str. VC-16 prokMSA_id:50705 Archaeoglobus fulgidus complete genome NC_000917 prokMSA_id:69844 Archaeoglobus veneficus 23S and internal transcribed spacer prokMSA_id:71588 Archaeoglobus lithotrophicus TF2 23S and ITS1 strain TF2 prokMSA_id:71722 Archaeoglobus veneficus DSM 11195 prokMSA_id:73240 Hyperthermophile str. 234 prokMSA_id:74691 Archaeoglobus fulgidus section 142 of 172 of the complete ge 1.1.3.6.2149 OTU 3 seqs prokMSA_id:746 clone pISA16 prokMSA_id:71793 GBa1r013 prokMSA_id:72343 GBa1r010 1.1.3.6.2181 OTU 1 seq prokMSA_id:39716 AT_R040 1.1.3.6.2187 OTU 1 seq prokMSA_id:71091 isolate Eel-36a2G10 1.1.3.6.2214 OTU 6 seqs prokMSA_id:30999 GBa2r045 prokMSA_id:68319 clone G72_C65 prokMSA_id:68320 clone G72_C59 prokMSA_id:68325 clone G72_C3 prokMSA_id:70411 clone G72_C2 prokMSA_id:71148 AT_R022 1.1.4 THERMOCOCCALES 78 seqs 1.1.4.2 TC.AGGREGANS 1 seq 1.1.4.2.2199 OTU 1 seq prokMSA_id:757 Thermococcus aggregans str. TY DSM 10597 1.1.4.3 PC.FURIOSUS_SUBGROUP 17 seqs 1.1.4.3.2076 OTU 2 seqs prokMSA_id:763 Pyrococcus shinkaii str. OT3 prokMSA_id:73290 Pyrococcus horikoshii complete D45214 1.1.4.3.2182 OTU 15 seqs prokMSA_id:758 Pyrococcus sp prokMSA_id:759 Pyrococcus abyssi str. ST546 prokMSA_id:760 Pyrococcus abyssi str. ST549 prokMSA_id:761 Pyrococcus abyssi prokMSA_id:762 Pyrococcus horikoshii str. OT3 prokMSA_id:765 Pyrococcus horikoshii str. JA-1 prokMSA_id:766 Pyrococcus furiosus prokMSA_id:767 Pyrococcus hellenicus str. P3BK17S6-3-a3 prokMSA_id:768 Thermococcus chitonophagus str. GC74 DSM 10152 . X99570 prokMSA_id:769 Pyrococcus sp. str. AL585 prokMSA_id:49491 SAGMA-16 AB050246 prokMSA_id:70123 Pyrococcus horikoshii D87344 prokMSA_id:84011 clone:pCIRA-C AB095114 prokMSA_id:84479 Pyrococcus sp. Tc-2-70 AB095146 prokMSA_id:86433 Thermococcus sp. Tc-1-70 AB095143 1.1.4.4 TC.CELER_SUBGROUP 60 seqs 1.1.4.4.2075 OTU 1 seq prokMSA_id:46965 33-P44A00 1.1.4.4.2195 OTU 1 seq prokMSA_id:24840 SAGMA-G 1.1.4.4.2212 OTU 1 seq prokMSA_id:771 clone pMCA256 1.1.4.4.2219 OTU 1 seq prokMSA_id:772 clone pMC2A209 1.1.4.4.2220 OTU 1 seq prokMSA_id:774 clone pMC2A17 1.1.4.4.2221 OTU 1 seq prokMSA_id:775 clone pISA1 1.1.4.4.2224 OTU 1 seq prokMSA_id:58788 Palaeococcus helgesonii ; -23S intergenic spacer complete ; 1.1.4.4.2226 OTU 3 seqs prokMSA_id:778 clone pMC2A249 prokMSA_id:779 clone pMC2A14. AB019715 prokMSA_id:780 clone pSSMCA1 1.1.4.4.2237 OTU 22 seqs prokMSA_id:777 Thermococcus hydrothermalis str. AL662 prokMSA_id:784 Thermococcus celer str. VU 13 DSM 2476 prokMSA_id:789 Thermococcus barossii prokMSA_id:791 Thermococcus sp. strain P6 prokMSA_id:800 VC2.1 Arc5 complete prokMSA_id:802 VC2.1 Arc16 complete prokMSA_id:803 VC2.1 Arc35 complete prokMSA_id:814 Thermococcus stetteri str. K-3 DSM 5262 prokMSA_id:30578 Thermococcus acidaminovorans strain:DSM 11906 prokMSA_id:30964 Thermococcus gorgonarius strain:JCM 10552 prokMSA_id:31437 Thermococcus gorgonarius strain DSM 10395 prokMSA_id:34911 Desulfurococcus sp. SY prokMSA_id:38459 Thermococcus acidaminovorans strain DSM 11906 prokMSA_id:43730 Thermococcus gammatolerans prokMSA_id:54119 Thermococcus sp. MZ2 ; internal transcribed spacer complete prokMSA_id:54189 Thermococcus sp. MZ1 ; internal transcribed spacer complete prokMSA_id:54583 Thermococcus sp. MZ12 ; internal transcribed spacer complete prokMSA_id:54651 Thermococcus sp. MZ5 ; internal transcribed spacer complete prokMSA_id:54665 Thermococcus sp. MZ13 ; internal transcribed spacer complete prokMSA_id:55014 Thermococcus sp. MZ6 ; internal transcribed spacer complete prokMSA_id:68329 clone G26_C48 prokMSA_id:71185 Thermococcus kodakaraensis genes 23S complete and sequences 1.1.4.4.2238 OTU 1 seq prokMSA_id:34194 SAGMA-I 1.1.4.4.2240 OTU 6 seqs prokMSA_id:790 Thermococcus zilligii str. AN1 prokMSA_id:807 Palaeococcus ferriphilus str. DMJ. AB019239 prokMSA_id:810 Thermococcus waimanguensis str. Wai21.S1 prokMSA_id:811 Thermococcus Rt3 str. Rt3 prokMSA_id:812 Thermococcus waiotapuense str. WT1 prokMSA_id:19786 Thermococcus waiotapuensis strain:JCM 10985 1.1.4.4.2242 OTU 5 seqs prokMSA_id:786 Thermococcus mexicalis str. GY 869 prokMSA_id:787 Thermococcus sp. str. B1001 prokMSA_id:792 Thermococcus aegeaicus str. P5BK17S6-3-b2 prokMSA_id:46577 Thermococcus sibiricus prokMSA_id:48696 Thermococcus alcaliphilus strain:DSM 10322 1.1.4.4.2264 OTU 16 seqs prokMSA_id:770 Thermococcus barophilus str. MP prokMSA_id:799 VC2.1 Arc1 complete prokMSA_id:809 Thermococcus profundus str. DT5432 DSM 9503 prokMSA_id:818 Pyrococcus sp. str. KOD1 prokMSA_id:819 Thermococcus guaymasensis str. TYS JCM 10136 prokMSA_id:18391 Thermococcus radiophilus prokMSA_id:21914 Thermococcus pacificus strain:JCM 10553 prokMSA_id:32059 Thermococcus peptonophilus strain DSM 10343 AJ298871 prokMSA_id:32192 Thermococcus peptonophilus strain DSM 10343 AJ291810 prokMSA_id:33045 Thermococcus siculi strain:DSM 12349 prokMSA_id:34206 Thermococcus pacificus strain DSM 10394 prokMSA_id:48271 Thermococcus siculi strain DSM 12349 AJ298870 prokMSA_id:48581 Thermococcus siculi strain DSM 12349 AJ291808 prokMSA_id:58650 Thermococcus sp. MV1099 23S and ITS 1 prokMSA_id:69804 C1_R034 prokMSA_id:73209 Thermococcus marinus 1.1.5 METHANOPYRALES 2 seqs 1.1.5.2114 OTU 2 seqs prokMSA_id:822 Methanopyrus kandleri str. av19 DSM 6324 prokMSA_id:64372 Methanopyrus kandleri AV19 complete genome 1.2 CRENARCHAEOTA 295 seqs 1.2.1 THERMOPHILIC_CRENARCHAEOTA 174 seqs 1.2.1.2 ENVIRONMENTAL_CLONE_PJP33 1 seq 1.2.1.2.2648 OTU 1 seq prokMSA_id:824 Mud Volcano area of Yellowstone NP "Black Pool" hot spring 1.2.1.3 TMF.PENDENS_SUBGROUP 44 seqs 1.2.1.3.2566 OTU 3 seqs prokMSA_id:826 Thermofilum pendens str. Hvv3 DSM 2475 prokMSA_id:49927 Thermofiliaceae str. SRI-370 prokMSA_id:70948 crenarchaeote pBA1 1.2.1.3.2568 OTU 6 seqs prokMSA_id:34207 thermal soil clone YNPFFA4 prokMSA_id:36629 thermal soil clone YNPFFA85 prokMSA_id:37402 thermal soil clone YNPFFA1 prokMSA_id:41999 thermal soil clone YNPFFA23 prokMSA_id:45996 thermal soil clone YNPFFA108 prokMSA_id:63276 clone ARCP1-35 1.2.1.3.2573 OTU 2 seqs prokMSA_id:852 clone Arc.2 prokMSA_id:47871 Arc.168 1.2.1.3.2575 OTU 3 seqs prokMSA_id:831 clone BBA6 prokMSA_id:23119 crenarchaeote MERTZ_2CM_269 prokMSA_id:31024 crenarchaeote MERTZ_21CM_232 1.2.1.3.2577 OTU 2 seqs prokMSA_id:849 clone pUWA2 prokMSA_id:53714 clone A14 1.2.1.3.2580 OTU 10 seqs prokMSA_id:829 clone vadinDC69 prokMSA_id:835 clone pGrfC26 prokMSA_id:42699 WSB-11 AB055993 prokMSA_id:43667 62-2 prokMSA_id:45742 72-1 prokMSA_id:56717 crenarchaeote clone 44a-A1-4 prokMSA_id:81841 methanogenic clone FenO1- prokMSA_id:82394 methanogenic clone FenO- AJ548934 prokMSA_id:83224 clone AF87 AY092146 prokMSA_id:83474 clone AF9 AY092147 1.2.1.3.2581 OTU 5 seqs prokMSA_id:832 clone Arc.1 prokMSA_id:834 clone Arc.119 prokMSA_id:30652 Arc.118 prokMSA_id:42364 Arc.98 prokMSA_id:69953 Arc.119 AF005762 1.2.1.3.2617 OTU 1 seq prokMSA_id:838 clone pSL4 1.2.1.3.2618 OTU 1 seq prokMSA_id:839 clone pSL50 1.2.1.3.2627 OTU 1 seq prokMSA_id:847 clone pBRKC88 1.2.1.3.2628 OTU 1 seq prokMSA_id:848 unnamed organism 1.2.1.3.2630 OTU 1 seq prokMSA_id:68897 SAGMA-H 1.2.1.3.2634 OTU 1 seq prokMSA_id:854 clone pGrfB286 1.2.1.3.2635 OTU 1 seq prokMSA_id:43314 clone A1 1.2.1.3.2637 OTU 1 seq prokMSA_id:72965 AT_R003 1.2.1.3.2649 OTU 1 seq prokMSA_id:828 clone pBRKC86 1.2.1.3.2653 OTU 1 seq prokMSA_id:44205 clone KS60 1.2.1.3.2652 OTU 1 seq prokMSA_id:73046 GBa2r048 1.2.1.3.2654 OTU 1 seq prokMSA_id:830 clone pMC2A308 1.2.1.3.2655 OTU 1 seq prokMSA_id:833 clone Arc.22 1.2.1.4 PYB.ISLANDICUM_SUBGROUP 31 seqs 1.2.1.4.2596 OTU 1 seq prokMSA_id:872 Thermoproteus tenax 1.2.1.4.2597 OTU 1 seq prokMSA_id:877 Thermocladium modestius str. IC-125 JCM 10088 1.2.1.4.2608 OTU 17 seqs prokMSA_id:16312 Vulcanisaeta distributa strain:IC-052 AB063636 prokMSA_id:18315 Vulcanisaeta distributa strain:IC-017 AB063630 prokMSA_id:19003 Vulcanisaeta distributa strain:IC-065 AB063639 prokMSA_id:23083 Vulcanisaeta souniana strain:IC-060 AB063646 prokMSA_id:23289 Vulcanisaeta souniana strain:IC-059 prokMSA_id:23618 Vulcanisaeta distributa strain:IC-135 AB063641 prokMSA_id:27751 Vulcanisaeta distributa strain:IC-029 AB063632 prokMSA_id:30926 Vulcanisaeta distributa strain:IC-032 prokMSA_id:38823 Vulcanisaeta distributa strain:IC-051 AB063635 prokMSA_id:40703 Vulcanisaeta distributa strain:IC-124 AB063640 prokMSA_id:41394 Vulcanisaeta distributa strain:IC-019 AB063631 prokMSA_id:42441 Vulcanisaeta distributa strain:IC-058 AB063637 prokMSA_id:45499 Vulcanisaeta distributa strain:IC-030 AB063633 prokMSA_id:47601 Vulcanisaeta distributa strain:IC-140 AB063643 prokMSA_id:71811 Vulcanisaeta distributa strain:IC-141 AB063644 prokMSA_id:72845 Vulcanisaeta distributa strain:IC-064 AB063638 prokMSA_id:73455 Vulcanisaeta distributa strain:IC-136 1.2.1.4.2609 OTU 11 seqs prokMSA_id:868 Pyrobaculum islandicum str. geo3 prokMSA_id:869 Pyrobaculum aerophilum str. IM2 DSM 7523 . L07510 prokMSA_id:870 Pyrobaculum neutrophilum str. NZ1 prokMSA_id:873 Thermoproteus neutrophilus JCM 9278 prokMSA_id:20435 Pyrobaculum arsenaticum strain PZ6 AJ277124 prokMSA_id:26139 crenarchaeote pBA2 AF176346 prokMSA_id:34186 Pyrobaculum organotrophum strain:JCM 9190 prokMSA_id:44220 Pyrobaculum oguniense prokMSA_id:52477 Pyrobaculum sp. WIJ3 prokMSA_id:63979 Pyrobaculum oguniense genes homing endonuclease I-PogI and c prokMSA_id:78804 Pyrobaculum calidifontis complete 1.2.1.4.2650 OTU 1 seq prokMSA_id:16428 Caldivirga maquilingensis 1.2.1.5 PYRODICTIALES 48 seqs 1.2.1.5.1 PYR.OCCULTUM_SUBGROUP 10 seqs 1.2.1.5.1.2564 OTU 2 seqs prokMSA_id:23461 pPACMA-I prokMSA_id:23664 pPACMA-X 1.2.1.5.1.2598 OTU 1 seq prokMSA_id:880 clone pSL123 1.2.1.5.1.2600 OTU 1 seq prokMSA_id:888 clone pISA9 1.2.1.5.1.2631 OTU 1 seq prokMSA_id:17296 crenarchaeote clone SUBT-13 1.2.1.5.1.2656 OTU 5 seqs prokMSA_id:884 clone pOWA19 prokMSA_id:885 clone pOWA54 prokMSA_id:886 clone pUWA43 prokMSA_id:63629 clone pEPR153 prokMSA_id:70637 C1_R025 1.2.1.5.2 AP.PERNIX_SUBGROUP 13 seqs 1.2.1.5.2.2590 OTU 1 seq prokMSA_id:894 Aeropyrum pernix str. K1 1.2.1.5.2.2595 OTU 1 seq prokMSA_id:28917 73D 1.2.1.5.2.2607 OTU 8 seqs prokMSA_id:901 clone VAL11 prokMSA_id:902 clone VAL81 prokMSA_id:903 clone VAL20 prokMSA_id:904 clone VAL42 prokMSA_id:905 clone VAL48 prokMSA_id:906 clone VAL29 prokMSA_id:907 clone VAL18 prokMSA_id:908 clone VAL76 1.2.1.5.2.2613 OTU 1 seq prokMSA_id:900 str. JTB173 1.2.1.5.2.2633 OTU 1 seq prokMSA_id:899 clone Arc.43 1.2.1.5.2.2641 OTU 1 seq prokMSA_id:72647 Desulfurococcus sp. clone SUBT-9 1.2.1.5.3 STH.MARINUS_SUBGROUP 16 seqs 1.2.1.5.3.2560 OTU 7 seqs prokMSA_id:916 Staphylothermus marinus str. F1 DSM 3639 prokMSA_id:920 Staphylothermus achaiicus str. P8BK20S6-10-b1 prokMSA_id:56004 20a-15 clone 20a-15 AJ299156 prokMSA_id:59040 20a-25 clone 20a-25 AJ299158 prokMSA_id:59042 20a-17 clone 20a-17 AJ299157 prokMSA_id:59090 20a-3 clone 20a-3 AJ299150 prokMSA_id:59091 20a-2 clone 20a-2 AJ299149 1.2.1.5.3.2571 OTU 3 seqs prokMSA_id:922 clone Arc.4 prokMSA_id:27534 Arc.212 prokMSA_id:35833 Arc.148 1.2.1.5.3.2576 OTU 2 seqs prokMSA_id:921 Igneococcus islandicus str. Ko18 prokMSA_id:16514 Ignicoccus pacificus strain LPC33 1.2.1.5.3.2611 OTU 1 seq prokMSA_id:66762 Ignicoccus sp. Kin4-I strain Kin4-I 1.2.1.5.3.2622 OTU 1 seq prokMSA_id:917 unnamed organism 1.2.1.5.3.2623 OTU 1 seq prokMSA_id:918 clone BBA2 1.2.1.5.3.2624 OTU 1 seq prokMSA_id:919 clone pSL22 1.2.1.5.4 DCO.MOBILIS_SUBGROUP 9 seqs 1.2.1.5.4.2565 OTU 2 seqs prokMSA_id:934 clone Arc.3 prokMSA_id:935 clone Arc.75 1.2.1.5.4.2605 OTU 6 seqs prokMSA_id:929 Desulfurococcus mobilis DSM 2161 prokMSA_id:930 Desulfurococcus mobilis prokMSA_id:932 unnamed organism prokMSA_id:936 Sulfophobococcus zilligii str. K1 DSM 11193 prokMSA_id:22921 Desulfurococcaceae str. SRI-465 AF255606 prokMSA_id:23984 Desulfurococcus sp. SEA 1.2.1.5.4.2639 OTU 1 seq prokMSA_id:931 clone Arc.9 1.2.1.6 SULFOLOBUS_SUBGROUP_I 22 seqs 1.2.1.6.1 SUL.SOLFATARICUS_SUBGROUP 19 seqs 1.2.1.6.1.2561 OTU 19 seqs prokMSA_id:938 Sulfolobus solfataricus str. Ron 12/III prokMSA_id:940 Sulfolobus shibatae str. B12 DSM 5389 prokMSA_id:941 Sulfolobus solfataricus str. P1 DSM 1616 prokMSA_id:942 Sulfolobus solfataricus str. P1 IFO 15331 . D26490 prokMSA_id:54467 Sulfolobus solfataricus complete genome NC_002754 prokMSA_id:69935 Sulfolobus sp. NGB23/00 prokMSA_id:70345 Sulfolobus sp. FF5/00 prokMSA_id:71652 Sulfolobus sp. NL8/00 prokMSA_id:71769 Sulfolobus sp. MV2/99 prokMSA_id:73229 Sulfolobus sp. RC6/00 prokMSA_id:74206 Sulfolobus sp. NGB6/00 prokMSA_id:74215 Sulfolobus sp. AMP12/99 prokMSA_id:92332 Sulfolobus sp. C51 AY247901 prokMSA_id:92401 Sulfolobus sp. B6A AY247897 prokMSA_id:92457 Sulfolobus sp. M14A AY247895 prokMSA_id:92579 Sulfolobus sp. N15B AY247900 prokMSA_id:92813 Sulfolobus sp. I2 AY247893 prokMSA_id:92884 Sulfolobus sp. I7 AY247894 prokMSA_id:93061 Sulfolobus sp. N15A AY247899 1.2.1.6.2 SUL.METALLICUS_SUBGROUP 3 seqs 1.2.1.6.2.2572 OTU 3 seqs prokMSA_id:945 Sulfolobus sp. str. LM prokMSA_id:946 Sulfolobus metallicus DSM 6482 prokMSA_id:947 Sulfolobus metallicus DSM 6482 1.2.1.7 SULFOLOBUS_SUBGROUP_II 18 seqs 1.2.1.7.1 SUL.ACIDOCALDARIUS_SUBGROUP 6 seqs 1.2.1.7.1.2570 OTU 6 seqs prokMSA_id:950 Sulfolobus "thuringiensis" str. Ron 12/I. X90485 prokMSA_id:951 Sulfolobus acidocaldarius str. 98-3 ATCC 33909 prokMSA_id:952 Sulfolobus acidocaldarius. U05018 prokMSA_id:953 Sulfolobus solfataricus str. P1 DSM 1616 prokMSA_id:18034 Sulfolobus sp. MVSoil6/SC1 prokMSA_id:71832 Sulfolobus sp. MVSoil3/SC2 1.2.1.7.2 SL.AZORICUS_SUBGROUP 3 seqs 1.2.1.7.2.2610 OTU 3 seqs prokMSA_id:954 Sulfolobus sp. str. B6/2 prokMSA_id:955 Stygiolobus azoricus str. FC6 DSM 6296 prokMSA_id:956 Stygiolobus azoricus str. FC6 DSM 6296 1.2.1.7.3 SFR.OHWAKUENSIS_SUBGROUP 9 seqs 1.2.1.7.3.2599 OTU 1 seq prokMSA_id:959 clone FFSB5 1.2.1.7.3.2604 OTU 1 seq prokMSA_id:963 clone MS1 1.2.1.7.3.2614 OTU 4 seqs prokMSA_id:958 Sulfurisphaera ohwakuensis str. TA-1 IFO 15161 prokMSA_id:964 Sulfolobus yangmingensis str. YM prokMSA_id:46167 Sulfolobus tokodaii complete genome prokMSA_id:54912 Sulfolobus sp. and 23S complete and 1.2.1.7.3.2615 OTU 3 seqs prokMSA_id:29928 thermal soil clone YNPFFA30 prokMSA_id:30893 thermal soil clone YNPFFA52 prokMSA_id:35548 thermal soil clone YNPFFA2 1.2.1.8 ACIDIANUS_SUBGROUP 10 seqs 1.2.1.8.2 ADI.BRIERLEYI_SUBGROUP 4 seqs 1.2.1.8.2.2647 OTU 4 seqs prokMSA_id:973 Acidianus brierleyi prokMSA_id:974 Acidianus brierleyi DSM 1651 prokMSA_id:975 Acidianus brierleyi IFO 15269 prokMSA_id:19329 Acidianus tengchongensis 1.2.1.8.3 MTS.SEDULA_SUBGROUP 6 seqs 1.2.1.8.3.2567 OTU 6 seqs prokMSA_id:977 Metallosphaera sedula prokMSA_id:978 Metallosphaera sedula IFO 15509 prokMSA_id:979 Metallosphaera sedula DSM 5348 prokMSA_id:980 Metallosphaera prunae str. Ron 12/II DSM 10039 prokMSA_id:981 Metallosphaera J1 str. J1 prokMSA_id:41957 Metallosphaera sp. complete cds 1.2.2 NON-THERMOPHILIC_CRENARCHAEOTA 117 seqs 1.2.2.1 MARINE_CRENARCHAEOTA 115 seqs 1.2.2.1.2 ENVIRONMENTAL_CLONE_PVA2_SUBGROUP 1 seq 1.2.2.1.2.2640 OTU 1 seq prokMSA_id:989 Pacific Ocean station 49 500m depth clone 1.2.2.1.4 ENVIRONMENTAL_CLONE_4B7_SUBGROUP 114 seqs 1.2.2.1.4.2563 OTU 1 seq prokMSA_id:50209 pPCA4.4 1.2.2.1.4.2574 OTU 3 seqs prokMSA_id:1017 clone FFSB6 prokMSA_id:19586 Archaea sp. clone FFSA2 prokMSA_id:41469 Archaea sp. clone FFSA1 1.2.2.1.4.2579 OTU 2 seqs prokMSA_id:1007 unnamed organism prokMSA_id:1008 unnamed organism 1.2.2.1.4.2582 OTU 1 seq prokMSA_id:1127 clone PM8 1.2.2.1.4.2583 OTU 1 seq prokMSA_id:1128 clone PM23 1.2.2.1.4.2584 OTU 2 seqs prokMSA_id:39230 crenarchaeote clone SUBT-14 AF361211 prokMSA_id:58501 clone:pHAuA-C 1.2.2.1.4.2585 OTU 20 seqs prokMSA_id:1050 unnamed organism prokMSA_id:1056 unnamed organism prokMSA_id:1099 clone pMC2A1 prokMSA_id:1100 clone pMC1A11 prokMSA_id:1101 clone pMC1A103 prokMSA_id:1129 clone C6 prokMSA_id:1130 clone C11 prokMSA_id:1131 clone C20 prokMSA_id:1133 clone C35 prokMSA_id:1134 clone C46 prokMSA_id:1135 clone C48 prokMSA_id:28779 marine archaeal group 1 crenarchaeote clone ST-12K13A prokMSA_id:28911 marine archaeal group 1 crenarchaeote clone ST-3K4A prokMSA_id:33041 crenarchaeote 19H08 prokMSA_id:38520 crenarchaeote 15G10 ; and glutamate semialdehyde aminotransf prokMSA_id:39914 SAGMA-1 prokMSA_id:70288 CS_R008 prokMSA_id:70553 crenarchaeote 74A4 genomic prokMSA_id:73495 C1_R010 prokMSA_id:75293 crenarchaeote clone Gitt-GR-27 1.2.2.1.4.2586 OTU 1 seq prokMSA_id:1132 clone C33 1.2.2.1.4.2587 OTU 9 seqs prokMSA_id:1093 clone SB95-57 prokMSA_id:1102 clone pIVWA108 prokMSA_id:1103 clone pIVWA1. AB019727 prokMSA_id:1105 clone pIVWA11 prokMSA_id:1106 clone pIVWA2 prokMSA_id:1107 clone pIVWA3 prokMSA_id:1108 clone M17. U68604 prokMSA_id:34469 marine archaeal group 1 crenarchaeote clone ST-12K2A prokMSA_id:63634 clone pEPR853 AF526983 1.2.2.1.4.2588 OTU 3 seqs prokMSA_id:1005 clone 4B7 prokMSA_id:1126 clone PM7 prokMSA_id:46043 crenarchaeote 4B7 40 kb genomic fragment 1.2.2.1.4.2589 OTU 6 seqs prokMSA_id:1140 clone SCA1150 prokMSA_id:1146 clone SCA1173 prokMSA_id:25116 SAGMA-2 prokMSA_id:47778 SAGMA-W prokMSA_id:75056 crenarchaeote clone Gitt-GR-39 prokMSA_id:76611 crenarchaeote clone Gitt-GR-31 1.2.2.1.4.2591 OTU 10 seqs prokMSA_id:1111 clone pGrfA4 prokMSA_id:1142 clone SCA1154 prokMSA_id:1143 clone SCA1158 prokMSA_id:1145 clone SCA1170 prokMSA_id:41594 crenarchaeote TRC23-10 prokMSA_id:45484 crenarchaeote TRC132-3 prokMSA_id:74966 crenarchaeote clone Gitt-GR-5 prokMSA_id:75314 crenarchaeote clone Gitt-GR-74 prokMSA_id:76642 crenarchaeote clone Gitt-GR-47 prokMSA_id:83832 crenarchaeote clone 54D9 1.2.2.1.4.2593 OTU 5 seqs prokMSA_id:19543 Crenarchaeote symbiont of Axinella damicornis prokMSA_id:31020 Crenarchaeote symbiont of Axinella sp prokMSA_id:36985 Crenarchaeote symbiont of Axinella verrucosa prokMSA_id:69323 Cenarchaeum symbiosum strain A hypothetical protein 01 compl prokMSA_id:69639 Cenarchaeum symbiosum strain B histone H1 binding protein hc 1.2.2.1.4.2594 OTU 2 seqs prokMSA_id:1051 unnamed organism prokMSA_id:1055 unnamed organism 1.2.2.1.4.2601 OTU 1 seq prokMSA_id:1052 unnamed organism 1.2.2.1.4.2602 OTU 1 seq prokMSA_id:70916 crenarchaeote isolate DOURO3 1.2.2.1.4.2606 OTU 12 seqs prokMSA_id:1011 clone FFSB1 prokMSA_id:1014 clone FFSB2 prokMSA_id:19206 Front Range soil crenarchaeote FRD38 prokMSA_id:19287 crenarchaeote clone PSSBEM10-6 prokMSA_id:30300 Front Range soil crenarchaeote FRC1x2 prokMSA_id:32046 Front Range soil crenarchaeote FRC33A prokMSA_id:35162 crenarchaeote clone PSPIHH28-2 prokMSA_id:76043 crenarchaeote clone JG36-GR-140 prokMSA_id:84196 crenarchaeote clone GRU11 prokMSA_id:84510 crenarchaeote clone GRU10 prokMSA_id:84669 crenarchaeote clone GRU19 prokMSA_id:85692 crenarchaeote clone S248-7 1.2.2.1.4.2612 OTU 1 seq prokMSA_id:31165 SAGMA-8 1.2.2.1.4.2616 OTU 1 seq prokMSA_id:1029 Cenarchaeum symbiosum 1.2.2.1.4.2619 OTU 1 seq prokMSA_id:1006 clone pSL12 1.2.2.1.4.2620 OTU 1 seq prokMSA_id:1009 clone ACE-6 1.2.2.1.4.2621 OTU 8 seqs prokMSA_id:16793 SAGMA-Z AB050231 prokMSA_id:18486 SAGMA-D prokMSA_id:30678 SAGMA-X prokMSA_id:46479 SAGMA-11 prokMSA_id:49412 SAGMA-10 prokMSA_id:73503 clone SRS62DAR03 prokMSA_id:96490 clone EA1G9 AY186065 prokMSA_id:97287 clone EA1F4 AY186062 1.2.2.1.4.2625 OTU 15 seqs prokMSA_id:1139 clone SCA1145 prokMSA_id:1141 clone SCA1151 prokMSA_id:1144 clone SCA1166 prokMSA_id:1147 clone SCA1175 prokMSA_id:24479 crenarchaeote TRC23-38 prokMSA_id:26266 crenarchaeote TRC132-7 prokMSA_id:30247 crenarchaeote TRC132-8 prokMSA_id:32035 SAGMA-P prokMSA_id:32329 crenarchaeote TRC23-30 prokMSA_id:39571 crenarchaeote TRC23-31 prokMSA_id:43271 crenarchaeote TRC23-28 prokMSA_id:46609 crenarchaeote TRC132-9 prokMSA_id:51909 crenarchaeote TRC132-6 prokMSA_id:71074 crenarchaeote 34 kb genomic fragment prokMSA_id:76092 crenarchaeote clone Gitt-GR-78 1.2.2.1.4.2626 OTU 1 seq prokMSA_id:1010 VC2.1 Arc31 complete 1.2.2.1.4.2629 OTU 1 seq prokMSA_id:1019 clone pMC2A36 1.2.2.1.4.2638 OTU 1 seq prokMSA_id:22234 Front Range soil crenarchaeote FRA27 1.2.2.1.4.2643 OTU 1 seq prokMSA_id:20712 33-P38A00 1.2.2.1.4.2645 OTU 1 seq prokMSA_id:1148 clone SCA11 1.2.2.1.4.2646 OTU 1 seq prokMSA_id:50748 SAGMA-A 1.2.2.1.4.2651 OTU 1 seq prokMSA_id:16284 C1_R043 1.2.2.2 ENVIRONMENTAL_CLONE_PJP89 2 seqs 1.2.2.2.2603 OTU 1 seq prokMSA_id:1171 Mud Volcano area of Yellowstone NP "Black Pool" hot spring 1.2.2.2.2644 OTU 1 seq prokMSA_id:38903 Arc.201 1.2.3 ENVIRONMENTAL_CLONE_PJP27_SUBGROUP 4 seqs 1.2.3.2562 OTU 2 seqs prokMSA_id:1173 Mud Volcano area of Yellowstone NP "Black Pool" hot spring prokMSA_id:49873 Korarchaeota SRI-306 1.2.3.2569 OTU 2 seqs prokMSA_id:1172 Mud Volcano area of Yellowstone NP "Black Pool" hot spring prokMSA_id:51224 korarchaeote pBA5 2 BACTERIA 25117 seqs 2.1 THERMOPHILIC_OXYGEN_REDUCERS 78 seqs 2.1.220 OTU 5 seqs prokMSA_id:1177 clone OPB13 prokMSA_id:1182 clone env.OPS 1 prokMSA_id:1183 clone env.OPS 4 prokMSA_id:1184 clone env.OPS 7 prokMSA_id:60550 Aquificales YNP-SS1 2.1.256 OTU 1 seq prokMSA_id:32720 Aquificales clone 2.1.381 OTU 1 seq prokMSA_id:32287 Hydrogenothermus marinus 2.1.445 OTU 28 seqs prokMSA_id:1174 Thermocrinis ruber str. OC 1/4. AJ005640 prokMSA_id:1199 Calderobacterium hydrogenophilum str. Z-829 . Z30242 prokMSA_id:1207 clone OPS132 prokMSA_id:1209 Hydrogenobacter thermophilus str. T3. Z30189 prokMSA_id:1210 Hydrogenobacter subterranea str. HGP1 prokMSA_id:1211 str. EM 17 prokMSA_id:1213 clone OPS165. AF027105 prokMSA_id:16683 Hydrogenobacter sp. MV4L2B strain MV4L2B prokMSA_id:18011 Hydrogenobacter sp. PA14 strain PA16 prokMSA_id:21804 Thermocrinis sp. P2L2B strain P2L2B prokMSA_id:22567 Thermocrinis albus strain HI 11/12 prokMSA_id:23410 Thermocrinis sp. clone SUBT-1 prokMSA_id:25858 Aquificales str. SS5H1 AF301908 prokMSA_id:31233 Hydrogenobacter sp. GV8L3A strain GV8L3A prokMSA_id:33986 Hydrogenobacter sp. BB4L1B strain BB4L1B prokMSA_id:35025 Hydrogenobacter sp. PZ2AL1B strain PZ2AL1B prokMSA_id:36754 Thermocrinis sp. UZ23L3A strain UZ23L3A prokMSA_id:38669 Thermocrinis sp. H7L1B strain H7L1B prokMSA_id:38815 Aquificales str. SRI-48 prokMSA_id:39236 Hydrogenobacter sp. IT-7242 prokMSA_id:46163 Hydrogenobacter sp. UZ27L2A strain UZ27L2A prokMSA_id:51871 Aquificales pIce1 prokMSA_id:52320 Thermocrinis sp. G3L1B strain G3L1B prokMSA_id:60606 clone R57 prokMSA_id:60621 clone Y04 prokMSA_id:60624 clone Sed01 prokMSA_id:67859 Bacillus sp. clone DGG36 prokMSA_id:70459 Aquificales clone pKA 2.1.653 OTU 3 seqs prokMSA_id:1176 Hydrogenobacter acidophilus str. 3H-1 prokMSA_id:26906 clone B5 prokMSA_id:43828 Hydrogenobaculum sp. NOR3L3B strain NOR3L3B 2.1.715 OTU 1 seq prokMSA_id:1215 clone env.OPS 6 2.1.737 OTU 16 seqs prokMSA_id:1186 clone env.OPS 14 prokMSA_id:17781 Aquificales clone SM2G01 prokMSA_id:25727 Aquificales clone SM2G07 prokMSA_id:27456 Aquificales clone SM2G04 prokMSA_id:38487 Aquificales clone SM1B11 prokMSA_id:42953 Aquificales pBB prokMSA_id:49376 Aquificales clone SM1G03 prokMSA_id:56574 Aquificales clone:YUM915 AB073130 prokMSA_id:67472 Aquificales clone:YE3152 prokMSA_id:67473 Aquificales clone:YE2101 AB073125 prokMSA_id:67474 Aquificales clone:YE2921 prokMSA_id:67475 Aquificales clone:YE111 AB073123 prokMSA_id:67476 Aquificales clone:YE12 prokMSA_id:67477 Aquificales clone:YE31422 prokMSA_id:71370 Aquificaceae Az-Fu1 AF528192 prokMSA_id:72765 Aquificales clone pTthxG5 2.1.751 OTU 1 seq prokMSA_id:79191 Coprothermobacter sp. Dex80-3 strain Dex80-3 2.1.762 OTU 5 seqs prokMSA_id:1189 VC2.1 bac39 complete prokMSA_id:1194 VC2.1 Bac10 complete prokMSA_id:1195 VC2.1 Bac11 complete prokMSA_id:1196 VC2.1 Bac27 complete prokMSA_id:1198 VC2.1 Bac33 complete 2.1.82 OTU 17 seqs prokMSA_id:1187 Aquifex pyrophilus prokMSA_id:30117 Aquificales str. CIR3017HO90 prokMSA_id:32822 Aquifex sp. Gri14L3B strain Gri14L3B prokMSA_id:38306 Aquifex aeolicus section 83 of 109 of the complete genome AE prokMSA_id:39217 Aquifex aeolicus AJ309733 prokMSA_id:39591 Aquifex sp. Ob6 strain Ob6 AJ320224 prokMSA_id:51070 Aquifex aeolicus complete genome NC_000918 prokMSA_id:51605 Aquifex aeolicus section 41 of 109 of the complete genome prokMSA_id:53595 Aquifex aeolicus complete genome AE000657 prokMSA_id:82720 Aquifex sp. Aq-365-85-NO3 prokMSA_id:82818 Aquifex sp. Aq-1-85-NO3 prokMSA_id:83172 Aquifex sp. Aq-365-85-1%O2 prokMSA_id:83524 Aquifex sp. Aq-1-70-1%O2 prokMSA_id:84742 Aquifex sp. Aq-1-85-1%O2 prokMSA_id:85552 Aquifex sp. Aq-365-70-1%O2 prokMSA_id:86227 Aquifex sp. Aq-I-70-1%O2 AB095175 prokMSA_id:86369 Aquifex sp. Aq-S-70-1%O2 AB095176 2.2 THERMOTOGALES 43 seqs 2.2.1 PETROTOGA_GROUP 4 seqs 2.2.1.809 OTU 4 seqs prokMSA_id:1216 Petrotoga mobilis str. SJ95 DSM 10674 prokMSA_id:17828 Petrotoga siberica strain SL25T prokMSA_id:51557 Petrotoga olearia strain SL24T prokMSA_id:69492 Petrotoga mexicana 2.2.2 GEOTOGA_GROUP 4 seqs 2.2.2.238 OTU 1 seq prokMSA_id:79381 Thermotogales str. Dex60-32 strain Dex60-32 2.2.2.56 OTU 2 seqs prokMSA_id:1218 Geotoga petraea str. T5 ATCC 51226 prokMSA_id:1219 Geotoga subterranea str. CC-1 ATCC 51225 2.2.2.729 OTU 1 seq prokMSA_id:1220 str. MV1075 2.2.3 FERVIDOBACTERIUM_GROUP 4 seqs 2.2.3.732 OTU 1 seq prokMSA_id:1223 Caldotoga fontana str. B4 2.2.3.735 OTU 1 seq prokMSA_id:1227 Fervidobacterium gondwanense str. AB39 ACM 5017 2.2.3.780 OTU 2 seqs prokMSA_id:18702 Fervidobacterium islandicum strain AW-1 prokMSA_id:32030 Thermotogales sp. SRI-251 2.2.4 THERMOSIPHO_GROUP 8 seqs 2.2.4.346 OTU 5 seqs prokMSA_id:1231 Thermosipho IHB1 str. IHB1 prokMSA_id:40837 Thermosipho sp. DSM 13256 prokMSA_id:42520 Thermosipho sp. TBA5 prokMSA_id:50206 Thermosipho sp. DSM 6568 strain DSM 6568 RI19.B2 prokMSA_id:89466 Thermosipho sp. FD1 AB107770 2.2.4.51 OTU 1 seq prokMSA_id:72302 Thermosipho sp. MV1063 2.2.4.783 OTU 1 seq prokMSA_id:1230 Thermosipho melanesiensis str. BI429 CIP 104789 2.2.4.819 OTU 1 seq prokMSA_id:83498 Thermosipho ferriphilus 2.2.5 THERMOTOGA_GROUP 5 seqs 2.2.5.587 OTU 3 seqs prokMSA_id:1233 Thermotoga subterranea str. SL1 DSM 9912 prokMSA_id:1234 Thermotoga elfii str. SERB 6459 DSM 9442 prokMSA_id:62474 Thermotoga sp. TMO complete 2.2.5.804 OTU 1 seq prokMSA_id:1235 Thermotoga hypogea SEBR 7054 2.2.5.971 OTU 1 seq prokMSA_id:38910 Thermotoga thermarum 2.2.6 TT.MARITIMA_GROUP 14 seqs 2.2.6.573 OTU 13 seqs prokMSA_id:1236 Thermotoga maritima str. MSB8 DSM 3109 . M21774 prokMSA_id:24284 Thermotoga maritima strain FJSS3-B.1 prokMSA_id:27647 Thermotoga sp. RQ2 strain RQ2 AJ401019 prokMSA_id:32773 Thermotoga neapolitana strain LA10 prokMSA_id:35101 Thermotoga neapolitana strain NES AJ401016 prokMSA_id:40929 Thermotoga sp. RQ7 strain RQ7 AJ401023 prokMSA_id:41353 Thermotoga neapolitana prokMSA_id:46327 Thermotoga sp. RKU-10 isolate:RKU-10 prokMSA_id:48407 Thermotoga sp. RKU-1 prokMSA_id:49474 Thermotoga maritima complete genome NC_000853 prokMSA_id:50916 Thermotoga sp. SG1 strain SG1 AJ401022 prokMSA_id:70547 Thermotoga neapolitana strain LA4 prokMSA_id:72408 Thermotoga maritima strain SL7 AJ401017 2.2.6.826 OTU 1 seq prokMSA_id:1240 clone OPB14 2.2.7 ENVIRONMENTAL_CLONE_OPB7_GROUP 4 seqs 2.2.7.828 OTU 1 seq prokMSA_id:1241 str. EM 3 2.2.7.830 OTU 2 seqs prokMSA_id:1243 clone OPB7 prokMSA_id:35305 Thermotogales sp. SRI-15 AF255594 2.2.7.831 OTU 1 seq prokMSA_id:1248 clone TUG22 2.3 CTM.PROTEOLYTICUS_GROUP 2 seqs 2.3.848 OTU 1 seq prokMSA_id:1249 Coprothermobacter platensis str. 3R DSM 11748 2.3.880 OTU 1 seq prokMSA_id:1250 Coprothermobacter proteolyticus str. BT ATCC 35245 2.4 STRAIN.EM_19 2 seqs 2.4.41 OTU 2 seqs prokMSA_id:1251 str. EM 19 prokMSA_id:16693 clone BH81 complete 2.5 ENVIRONMENTAL_CLONE_OPB45_GROUP 19 seqs 2.5.230 OTU 1 seq prokMSA_id:1260 Desulfurobacterium thermolithotrophum str. BSA 2.5.48 OTU 1 seq prokMSA_id:52699 Thermodesulfobacterium sp. CIR29812 2.5.515 OTU 1 seq prokMSA_id:65699 soil clone S079 2.5.524 OTU 2 seqs prokMSA_id:1253 clone OPS67 prokMSA_id:1254 clone OPS68 2.5.62 OTU 3 seqs prokMSA_id:1259 Thermodesulfobacterium hveragerdicum str. JSP prokMSA_id:38674 Thermodesulfobacterium commune DSM 2178 AF418169 prokMSA_id:70598 Thermodesulfobacterium thermophilum strain DSM 1276 2.5.667 OTU 10 seqs prokMSA_id:1252 clone OPB45 prokMSA_id:1256 clone OPT4. AF027093 prokMSA_id:1257 clone OPT53. AF027094 prokMSA_id:1258 clone OPS7 prokMSA_id:27454 Geothermobacterium ferrireducens strain FW-1a prokMSA_id:39066 Thermodesulfotobacterium sp. SRI-93 prokMSA_id:42031 Thermodesulfobacterium hydrogeniphilum prokMSA_id:43680 Thermodesulfobacterium sp. clone BSpN50 complete prokMSA_id:67861 Thermodesulfobacteriaceae clone DGG19 prokMSA_id:72666 Thermodesulfotobacterium sp. SRI-27 2.5.899 OTU 1 seq prokMSA_id:1255 clone ORGANIC-1 2.7 GREEN_NON-SULFUR_BACTERIA_AND_RELATIVES 228 seqs 2.7.1 CHLOROFLEXUS_SUBDIVISION 95 seqs 2.7.1.1 CHLOROFLEXUS_ASSEMBLAGE 21 seqs 2.7.1.1.1041 OTU 1 seq prokMSA_id:85874 clone FBP471 2.7.1.1.1048 OTU 1 seq prokMSA_id:70526 clone SBR2022 2.7.1.1.119 OTU 1 seq prokMSA_id:38489 Green non-sulfur B1-5 2.7.1.1.202 OTU 1 seq prokMSA_id:72831 Chloroflexus sp. 396-1 strain 396-1 2.7.1.1.229 OTU 2 seqs prokMSA_id:21812 Chloroflexaceae group clone P4-E04 prokMSA_id:47113 Chloroflexaceae group clone P5-E06 2.7.1.1.235 OTU 1 seq prokMSA_id:1266 Herpetosiphon geysericola ATCC 23076 2.7.1.1.236 OTU 1 seq prokMSA_id:20892 Sphaerobacter thermophilus strain DSM 20745T 2.7.1.1.299 OTU 1 seq prokMSA_id:1282 Thermomicrobium roseum ATCC 27502 2.7.1.1.635 OTU 1 seq prokMSA_id:28650 clone HTH4 2.7.1.1.641 OTU 1 seq prokMSA_id:72494 Chloroflexus aggregans strain DSM 9486 2.7.1.1.718 OTU 2 seqs prokMSA_id:34391 Eikelboom 1851 Ben52 prokMSA_id:63978 clone:R6-06 AB087523 2.7.1.1.818 OTU 2 seqs prokMSA_id:37755 Chloroflexaceae group clone P5-F08 prokMSA_id:43935 Chloroflexaceae group clone P6-D01 2.7.1.1.942 OTU 4 seqs prokMSA_id:56710 clone R08 AF407685 prokMSA_id:60577 clone B55 prokMSA_id:60594 clone G32 prokMSA_id:71275 Chloroflexus aurantiacus strain DSM 637 AJ308501 2.7.1.1.99 VARIOUS 2 seqs 2.7.1.2 ENVIRONMENTAL_CLONE_T78_GROUP 61 seqs 2.7.1.2.1022 OTU 2 seqs prokMSA_id:35554 green nonsulfur MERTZ_0CM_325 prokMSA_id:46319 green nonsulfur MERTZ_2CM_230 2.7.1.2.1038 OTU 1 seq prokMSA_id:29524 green nonsulfur MERTZ_21CM_197 2.7.1.2.1051 OTU 1 seq prokMSA_id:76852 clone JG37-AG-138 2.7.1.2.1061 OTU 1 seq prokMSA_id:50483 green nonsulfur MERTZ_21CM_275 2.7.1.2.109 OTU 1 seq prokMSA_id:66908 clone SHD-194 2.7.1.2.180 OTU 1 seq prokMSA_id:69766 clone SHA-31 2.7.1.2.183 OTU 1 seq prokMSA_id:65480 SHD-58 2.7.1.2.27 OTU 1 seq prokMSA_id:22922 SHA-21 2.7.1.2.284 OTU 1 seq prokMSA_id:38885 green non-sulfur TIHP302-40 2.7.1.2.320 OTU 1 seq prokMSA_id:1293 clone OPT90 2.7.1.2.334 OTU 1 seq prokMSA_id:1298 str. BD3-16 2.7.1.2.432 OTU 2 seqs prokMSA_id:23428 sludge H39 prokMSA_id:36737 sludge S41 2.7.1.2.448 OTU 1 seq prokMSA_id:39542 clone Car120rc 2.7.1.2.537 OTU 24 seqs prokMSA_id:2708 str. SBR1029. X84472 prokMSA_id:2726 unnamed organism. X84483 prokMSA_id:2739 str. SBR1064. X84498 prokMSA_id:17004 soil clone S002 AY037556 prokMSA_id:19034 soil clone S111 AY037625 prokMSA_id:20488 freshwater LCK-51 AF107330 prokMSA_id:21638 soil clone 1028-2 AF423206 prokMSA_id:22845 sludge S16 prokMSA_id:40747 soil clone S054 AY037587 prokMSA_id:48198 soil clone S003 AY037557 prokMSA_id:67258 clone F13.34 prokMSA_id:67292 clone F10.31 prokMSA_id:67536 sludge H1 prokMSA_id:67537 sludge A30 AF234698 prokMSA_id:67538 sludge H19 prokMSA_id:67539 sludge A11b prokMSA_id:70551 soil clone 746-2 prokMSA_id:71187 soil clone 666-2 prokMSA_id:71675 clone SBR1029 prokMSA_id:72088 soil clone 572-2 prokMSA_id:72308 soil clone 838-2 prokMSA_id:73823 clone SBR1064 prokMSA_id:86049 Bacteroidetes clone BB-2-F8R AY214804 prokMSA_id:93900 clone P8-GEN-27 AY361935 2.7.1.2.634 OTU 2 seqs prokMSA_id:49130 green nonsulfur MERTZ_21CM_278 prokMSA_id:52047 green nonsulfur MERTZ_2CM_18 2.7.1.2.693 OTU 2 seqs prokMSA_id:37891 Crater Lake CL500-86 prokMSA_id:51154 Crater Lake CL500-11 AF316759 2.7.1.2.695 OTU 5 seqs prokMSA_id:1285 clone OPB65 prokMSA_id:1297 clone env.OPS 12 prokMSA_id:18359 green nonsulfur clone SM2G02 prokMSA_id:52019 green nonsulfur clone SM2H10 prokMSA_id:74684 green nonsulfur clone SM1B12 2.7.1.2.765 OTU 1 seq prokMSA_id:65481 SHD-71 2.7.1.2.767 OTU 1 seq prokMSA_id:65482 SHD-197 2.7.1.2.788 OTU 5 seqs prokMSA_id:1288 clone PENDANT-37 prokMSA_id:23867 green nonsulfur MERTZ_2CM_159 prokMSA_id:26191 green nonsulfur MERTZ_21CM_236 prokMSA_id:36235 green nonsulfur MERTZ_21CM_133 prokMSA_id:56086 clone OB3_58 2.7.1.2.827 OTU 1 seq prokMSA_id:22225 GR/GS-296.II.265 clone GR/GS-296.II.265 2.7.1.2.905 OTU 2 seqs prokMSA_id:1295 clone GCA112 prokMSA_id:1296 clone GCA004 2.7.1.2.927 OTU 1 seq prokMSA_id:72863 green non-sulfur clone P. palm C 37 2.7.1.2.983 OTU 2 seqs prokMSA_id:1287 clone SJA-15 prokMSA_id:52017 SHA-3 2.7.1.3 ENVIRONMENTAL_CLONE_OPB92_GROUP 13 seqs 2.7.1.3.1070 OTU 1 seq prokMSA_id:1304 clone LGd2 2.7.1.3.1072 OTU 1 seq prokMSA_id:1305 clone LGd6 2.7.1.3.1075 OTU 1 seq prokMSA_id:1306 clone LGd5 2.7.1.3.1076 OTU 1 seq prokMSA_id:1307 clone LGd10 2.7.1.3.1080 OTU 3 seqs prokMSA_id:1308 clone NTd42 prokMSA_id:1312 str. from Obsidian Pool hot spring Yellowstone National Park prokMSA_id:40604 candidate division OP11 clone SM1F02 2.7.1.3.12 OTU 1 seq prokMSA_id:1315 clone LGd9 2.7.1.3.171 OTU 2 seqs prokMSA_id:1302 clone LGd1 prokMSA_id:1303 clone LGd15 2.7.1.3.214 OTU 2 seqs prokMSA_id:1310 clone OPB92 prokMSA_id:28223 candidate division OP11 clone SM1E10 2.7.1.3.5 OTU 1 seq prokMSA_id:1309 clone OPS128 2.7.2 DEINOCOCCUS-THERMUS_SUBDIVISION 133 seqs 2.7.2.1 THERMUS_GROUP 116 seqs 2.7.2.1.1 T.THERMOPHILUS_SUBGROUP 83 seqs 2.7.2.1.1.178 OTU 1 seq prokMSA_id:67904 Thermus sp. C4 2.7.2.1.1.193 OTU 2 seqs prokMSA_id:20463 Marinothermus profundus strain 506T prokMSA_id:85579 Oceanothermus sp. St55B 2.7.2.1.1.753 OTU 3 seqs prokMSA_id:45920 Thermus oshimai strain SPS-17T prokMSA_id:46453 Thermus sp. T2 prokMSA_id:60595 clone G24 2.7.2.1.1.886 OTU 77 seqs prokMSA_id:1316 Thermus thermophilus str. HB27. L09659 prokMSA_id:1317 Thermus sp. str. YSPID A.1 prokMSA_id:1318 clone OPB19 prokMSA_id:1319 clone OPB31 prokMSA_id:1320 clone OPB32 prokMSA_id:1324 clone env.OPS 15 prokMSA_id:1325 Thermus sp. str. ZHGIB A.4. L10071 prokMSA_id:1326 Thermus thermophilus str. HB-8 ATCC 27634 prokMSA_id:1328 Thermus sp. str. Fiji 3A.1 prokMSA_id:1331 Thermus sp. str. YS38. Z15062 prokMSA_id:1333 Thermus scotoductus str. SE-1 DSM 8553 prokMSA_id:1334 Thermus sp. str. NMX2 A.1 prokMSA_id:1335 Thermus SA-01 str. SA-01 prokMSA_id:1337 Thermus sp. str. HS A.1 prokMSA_id:1338 Thermus sp. str. TMY1. AB020888 prokMSA_id:1344 Thermus flavus str. AT-62. L09660 prokMSA_id:1345 Thermus aquaticus str. YT-1 prokMSA_id:1348 Thermus sp. str. ZHGI A.1. L09664 prokMSA_id:1349 Thermus thermophilus str. HB-8 prokMSA_id:1350 Thermus H21.73.f prokMSA_id:1355 Thermus sp. str. ZFI A.2. L09662 prokMSA_id:1356 Thermus sp. str. ac-1 prokMSA_id:1357 Thermus sp. str. ac-7 prokMSA_id:1358 Thermus sp. str. ViI7 prokMSA_id:16358 AT425_EubC9 prokMSA_id:17962 Thermus sp. SRI-248 prokMSA_id:18463 Thermus igniterrae strain RF-4T Y18406 prokMSA_id:24092 Thermus kawarayuensis prokMSA_id:25836 Thermus sp. SRI-96 prokMSA_id:26144 Thermus scotoductus strain ITI-252T prokMSA_id:27993 Thermus sp. NTU-024 prokMSA_id:29817 Thermus/Deinococcus group clone SM1A01 prokMSA_id:30085 Thermus brockianus strain 15038T Y18409 prokMSA_id:33149 Thermus igniterrae strain HN1-8 Y18407 prokMSA_id:35173 Thermus thermophilus strain CS prokMSA_id:37306 Thermus thermophilus strain X6 prokMSA_id:39025 Thermus antranikianus strain HN3-7T prokMSA_id:40690 Thermus thermophilus strain CT1 prokMSA_id:41572 Thermus rehai prokMSA_id:45737 Thermus sp. IT-7254 prokMSA_id:47782 Thermus igniterrae strain GE-2 Y18408 prokMSA_id:53657 Thermus sp. HR13 prokMSA_id:55685 Thermus sp. G70-06 AF407738 prokMSA_id:55806 Thermus sp. G70-05 AF407737 prokMSA_id:60555 Thermus sp. Y55-11 prokMSA_id:60556 Thermus sp. Y55-12 AF407748 prokMSA_id:60557 Thermus sp. Y55-10 AF407746 prokMSA_id:60558 Thermus sp. Y55-09 AF407745 prokMSA_id:60559 Thermus sp. Y55-08 AF407744 prokMSA_id:60560 Thermus sp. Y55-07 AF407743 prokMSA_id:60561 Thermus sp. B70-05 prokMSA_id:60562 Thermus sp. B70-04 AF407741 prokMSA_id:60563 Thermus sp. G70-08 AF407740 prokMSA_id:60564 Thermus sp. G70-07 AF407739 prokMSA_id:60565 Thermus sp. R70-07 AF407736 prokMSA_id:60566 Thermus sp. R70-06 AF407735 prokMSA_id:60567 Thermus sp. Y70-07 AF407734 prokMSA_id:60568 Thermus sp. Y70-06 AF407733 prokMSA_id:60569 Thermus sp. Y70-05 AF407732 prokMSA_id:60605 clone R58 prokMSA_id:60613 clone Y90 prokMSA_id:60614 clone Y88 AF407682 prokMSA_id:60615 clone Y71 prokMSA_id:60620 clone Y10 prokMSA_id:60622 clone Y03 prokMSA_id:63588 Thermus sp. RH-1514 prokMSA_id:63589 Thermus sp. RH-1214 prokMSA_id:63592 Thermus sp. RH-914 prokMSA_id:67864 Thermus sp. clone DFQ34 prokMSA_id:67865 Thermus sp. clone DFQ28 prokMSA_id:67866 Thermus sp. clone DFQ37 prokMSA_id:67868 Thermus sp. clone DFQ6 prokMSA_id:71171 Thermus sp. YBJ-1 prokMSA_id:72262 H21.73.f AF005751 prokMSA_id:75730 45 from Patent WO0246392 AX557347 prokMSA_id:81243 Thermus scotoductus clone 1-43 prokMSA_id:81961 Thermus scotoductus clone 1-71 2.7.2.1.2 T.FILIFORMIS_SUBGROUP 11 seqs 2.7.2.1.2.136 OTU 9 seqs prokMSA_id:1360 Thermus filiformis prokMSA_id:1383 Thermus sp. str. W28 A.1 prokMSA_id:1384 Thermus sp. str. Tok8 A.1 prokMSA_id:1385 Thermus sp. str. Tok20 A.1 prokMSA_id:1388 Thermus sp. str. Tok3 A.1 prokMSA_id:1392 Thermus sp. str. Rt4 1A prokMSA_id:1393 Thermus sp. str. OK6 A.1 prokMSA_id:1394 Thermus sp. str. T351 prokMSA_id:38282 Thermus sp. clone 2.7.2.1.2.638 OTU 2 seqs prokMSA_id:1386 clone OPS1 prokMSA_id:2640 clone OPB88. AF027006 2.7.2.1.3 MEI.RUBER_SUBGROUP 22 seqs 2.7.2.1.3.563 OTU 1 seq prokMSA_id:60062 Vulcanithermus medioatlanticus strain TR 2.7.2.1.3.678 OTU 1 seq prokMSA_id:1404 Meiothermus chliarophilus str. ALT-8 DSM 9957 2.7.2.1.3.679 OTU 3 seqs prokMSA_id:1405 Meiothermus silvanus str. V1-R2 DSM 9946 prokMSA_id:1406 Meiothermus silvanus str. GY-8. Y13598 prokMSA_id:1407 Meiothermus silvanus str. GY-10. Y13599 2.7.2.1.3.941 OTU 17 seqs prokMSA_id:1395 Thermus sp. str. ac-17 prokMSA_id:1396 Meiothermus cerbereus str. GY-1 DSM 11376 . Y13594 prokMSA_id:1397 Meiothermus cerbereus str. GY-5. Y13595 prokMSA_id:1398 Thermus sp. str. ac-2 prokMSA_id:1400 Meiothermus ruber prokMSA_id:1401 Meiothermus ruber str. 16105. Y13596 prokMSA_id:1402 Meiothermus ruber str. 16106. Y13597 prokMSA_id:1403 Meiothermus ruber str. Loginova 21 ATCC 35948 prokMSA_id:17405 Meiothermus rosaceus prokMSA_id:20802 Meiothermus taiwanensis strain WR-220 prokMSA_id:26209 Meiothermus taiwanensis strain WR-30T prokMSA_id:56011 Thermus sp. R55-10 AF407749 prokMSA_id:56267 clone G21 prokMSA_id:60587 clone B01 prokMSA_id:60593 clone G34 prokMSA_id:60612 clone R03 prokMSA_id:69769 Meiothermus sp. R55-11 2.7.2.2 DEINOCOCCUS_GROUP 17 seqs 2.7.2.2.124 OTU 5 seqs prokMSA_id:1411 Deinococcus geothermalis str. AG-5a prokMSA_id:1412 Deinococcus geothermalis str. RSPS-2a prokMSA_id:1413 Deinococcus geothermalis str. AG-3a prokMSA_id:1420 Deinococcus geothermalis str. E50053. AJ000002 prokMSA_id:1421 Deinococcus geothermalis str. E50053. Y15444 2.7.2.2.335 OTU 3 seqs prokMSA_id:1414 Deinococcus murrayi str. ALT-1b prokMSA_id:1415 Deinococcus murrayi str. RSPS-7a prokMSA_id:1416 Deinococcus murrayi str. RSG-1.2 2.7.2.2.52 OTU 3 seqs prokMSA_id:1417 Deinococcus radiodurans DSM 20539 prokMSA_id:25349 Deinococcus radiodurans DC prokMSA_id:55007 Deinococcus radiodurans chromosome 1 complete 2.7.2.2.637 OTU 1 seq prokMSA_id:62482 Deinococci clone LA7-B27N 2.7.2.2.688 OTU 1 seq prokMSA_id:1408 Deinococcus proteolyticus DSM 20540 2.7.2.2.700 OTU 1 seq prokMSA_id:1410 Deinococcus radiophilus DSM 20551 2.7.2.2.720 OTU 1 seq prokMSA_id:1419 Deinococcus radiopugnans ATCC 19172 2.7.2.2.920 OTU 1 seq prokMSA_id:63290 clone RCP1-75 2.7.2.2.996 OTU 1 seq prokMSA_id:1418 Deinococcus radiodurans ATCC 35073 2.8 ENVIRONMENTAL_CLONE_OPB80_GROUP 28 seqs 2.8.114 OTU 1 seq prokMSA_id:63289 clone RCP2-64 2.8.127 OTU 1 seq prokMSA_id:1431 clone SJA-171 2.8.130 OTU 1 seq prokMSA_id:1432 clone SJA-176 2.8.148 OTU 1 seq prokMSA_id:1435 clone SJA-22 2.8.211 OTU 2 seqs prokMSA_id:1434 clone OPB80 prokMSA_id:1436 clone OPB90 2.8.308 OTU 4 seqs prokMSA_id:30869 clone HTG11 AF418960 prokMSA_id:54457 clone HTF1 AF418958 prokMSA_id:57713 clone HTD12 prokMSA_id:57714 clone HTB7 2.8.326 OTU 1 seq prokMSA_id:85439 clone ST01-SN3H 2.8.457 OTU 1 seq prokMSA_id:57715 clone HTC12 2.8.459 OTU 3 seqs prokMSA_id:58376 candidate division OP10 clone SBRT162 AF368189 prokMSA_id:58377 candidate division OP10 clone SBRT161 AF368187 prokMSA_id:58378 candidate division OP10 clone SBRT152 2.8.484 OTU 1 seq prokMSA_id:63206 clone FW68 2.8.495 OTU 3 seqs prokMSA_id:46234 firmicute clone SM2H09 prokMSA_id:46324 firmicute clone SM2D03 prokMSA_id:46343 clone SM2G08 2.8.514 OTU 2 seqs prokMSA_id:66823 candidate division OP10 clone SBRA309 prokMSA_id:66825 candidate division OP10 clone SBRA136 2.8.650 OTU 2 seqs prokMSA_id:17343 CFB/Green sulfur group clone KL-11-1-13 AF408271 prokMSA_id:80475 candidate division OP10 clone W1-4H 2.8.676 OTU 1 seq prokMSA_id:71249 SBR1039 2.8.728 OTU 1 seq prokMSA_id:81869 clone ZZ12AC2 2.8.763 OTU 1 seq prokMSA_id:1429 clone OPB50 2.8.903 OTU 1 seq prokMSA_id:32254 WD294 clone WD294 2.8.925 OTU 1 seq prokMSA_id:41280 UASB_TL26 complete 2.9 LEPTOSPIRILLUM-NITROSPIRA 107 seqs 2.9.1 NITROSPIRA_GROUP 44 seqs 2.9.1.1 NSP.MARINA_SUBGROUP 6 seqs 2.9.1.1.199 OTU 1 seq prokMSA_id:1443 Nitrospira marina 2.9.1.1.216 OTU 1 seq prokMSA_id:1449 Cytophaga sp. str. BD3-8 2.9.1.1.255 OTU 1 seq prokMSA_id:1450 clone Sva0777 2.9.1.1.269 OTU 1 seq prokMSA_id:70898 clone TK24 2.9.1.1.984 OTU 2 seqs prokMSA_id:75438 Nitrospira sp. clone JG37-AG-131 prokMSA_id:76201 clone JG37-AG-70 2.9.1.2 NSP.MOSCOVIENSIS_SUBGROUP 38 seqs 2.9.1.2.1031 OTU 1 seq prokMSA_id:65688 soil clone S0126 2.9.1.2.179 OTU 1 seq prokMSA_id:60596 clone G19 2.9.1.2.260 OTU 1 seq prokMSA_id:1457 clone K20-81 2.9.1.2.278 OTU 1 seq prokMSA_id:1458 clone K20-78 2.9.1.2.407 OTU 1 seq prokMSA_id:46321 Green Bay ferromanganous micronodule MNB2 2.9.1.2.543 OTU 1 seq prokMSA_id:47795 clone t015 2.9.1.2.589 OTU 2 seqs prokMSA_id:44024 sludge A31 AF234694 prokMSA_id:52208 sludge S47 2.9.1.2.854 OTU 1 seq prokMSA_id:1495 clone 1404-16 2.9.1.2.860 OTU 15 seqs prokMSA_id:1460 Nitrospira sp prokMSA_id:1461 Nitrospira sp prokMSA_id:1462 Nitrospira sp prokMSA_id:1463 Nitrospira sp prokMSA_id:1464 Nitrospira sp prokMSA_id:1465 Nitrospira sp prokMSA_id:1466 Nitrospira sp prokMSA_id:1467 Nitrospira sp prokMSA_id:1471 Nitrospira sp prokMSA_id:1473 Nitrospira sp prokMSA_id:1474 Nitrospira sp prokMSA_id:1480 clone A-11 prokMSA_id:1481 clone A-4 prokMSA_id:1493 Nitrospira cf. moscoviensis SBR2016 str. SBR2016 prokMSA_id:19768 PHOS-HE34 2.9.1.2.864 OTU 14 seqs prokMSA_id:1456 Nitrospira moscoviensis str. M-1 DSM 10035 prokMSA_id:1468 Nitrospira sp prokMSA_id:1472 Nitrospira sp prokMSA_id:1475 Nitrospira sp prokMSA_id:1490 Nitrospira sp prokMSA_id:1491 Nitrospira cf. moscoviensis SBR1015 str. SBR1015 prokMSA_id:1492 Nitrospira cf. moscoviensis SBR1024 str. SBR1024 prokMSA_id:1494 Nitrospira cf. moscoviensis SBR2046 str. SBR2046 prokMSA_id:38830 Green Bay ferromanganous micronodule MNC2 prokMSA_id:50234 clone HT2BB6 AF418966 prokMSA_id:85357 clone CCU23 AY221079 prokMSA_id:88224 DSSD62 AY328760 prokMSA_id:88698 DSSD16 AY328715 prokMSA_id:93640 Nitrospira sp. clone JG36-GS-2 AJ582041 2.9.2 STR.SBR1108 1 seq 2.9.2.663 OTU 1 seq prokMSA_id:32174 SBR1108 2.9.3 LEPTOSPIRILLUM_GROUP 40 seqs 2.9.3.1 LPP.FERROOXIDANS_SUBGROUP 31 seqs 2.9.3.1.157 OTU 11 seqs prokMSA_id:1509 Leptospirillum ferrooxidans prokMSA_id:1510 clone TRA1-10 prokMSA_id:17118 Leptospirillum ferrooxidans strain CF12 complete prokMSA_id:17578 Leptospirillum ferrooxidans strain P3a complete prokMSA_id:24590 Leptospirillum ferrooxidans strain Chil-Lf2 complete prokMSA_id:28578 Leptospirillum ferrooxidans strain 49879 complete prokMSA_id:30465 Leptospirillum ferrooxidans strain Parys complete prokMSA_id:39980 Leptospirillum ferrooxidans strain Sy complete prokMSA_id:40142 Leptospirillum sp. NOen1 prokMSA_id:41859 Leptospirillum ferrooxidans strain BCT2 complete prokMSA_id:58308 clone BA39 2.9.3.1.194 OTU 17 seqs prokMSA_id:1499 clone cOS17. X86772 prokMSA_id:1500 Leptospirillum sp. DSM 2391 prokMSA_id:1503 Leptospirillum ferrooxidans prokMSA_id:1507 clone cOS7 prokMSA_id:28124 Leptospirillum sp. K01 prokMSA_id:29535 Leptospirillum ferriphilum strain Fairview AF356830 prokMSA_id:29635 Leptospirillum sp. TzT-JG-3 prokMSA_id:34533 Leptospirillum ferrooxidans strain TzT-B1-K3 prokMSA_id:38108 Leptospirillum sp. strain DSM 2391 prokMSA_id:38542 Leptospirillum ferrooxidans strain TzT-B1-K4 prokMSA_id:38928 Leptospirillum sp. isolate LA prokMSA_id:39717 Leptospirillum ferriphilum strain ATCC 49881 AF356829 prokMSA_id:41525 Leptospirillum sp. TzT-JG-24 prokMSA_id:43208 Leptospirillum sp. K16 prokMSA_id:45840 BA24 prokMSA_id:50647 Leptospirillum ferriphilum strain Warwick prokMSA_id:56048 Leptospirillum sp. MT6 2.9.3.1.611 OTU 1 seq prokMSA_id:58314 clone AW11 2.9.3.1.705 OTU 1 seq prokMSA_id:77042 actinobacterium clone Sh765B-AG-45 2.9.3.1.738 OTU 1 seq prokMSA_id:76626 clone JG34-KF-252 2.9.3.2 ENVIRONMENTAL_CLONE_C0S62 9 seqs 2.9.3.2.240 OTU 3 seqs prokMSA_id:56204 clone BA33 prokMSA_id:58317 clone AW4 prokMSA_id:63293 clone RCP2-12 2.9.3.2.81 OTU 1 seq prokMSA_id:1511 clone cOS62 2.9.3.2.833 OTU 5 seqs prokMSA_id:54251 BA29 prokMSA_id:58150 clone ASL9 prokMSA_id:58311 clone AW5 prokMSA_id:58316 clone AW1 prokMSA_id:63295 clone RCP1-70 2.9.4 TDV.YELLOWSTONII_GROUP 22 seqs 2.9.4.15 OTU 1 seq prokMSA_id:1526 str. BD2-6 2.9.4.16 OTU 1 seq prokMSA_id:1528 clone OPI-2 2.9.4.18 OTU 1 seq prokMSA_id:1529 clone OPB67A 2.9.4.22 OTU 3 seqs prokMSA_id:1524 clone TG25 prokMSA_id:1525 clone TG33 prokMSA_id:1704 clone TG14 2.9.4.287 OTU 4 seqs prokMSA_id:1523 Thermodesulfovibrio islandicus str. R1ha3 prokMSA_id:1531 Thermodesulfovibrio TGL-LS1 str. TGL-LS1 prokMSA_id:1532 Thermodesulfovibrio TSL-P1 str. TSL-P1 prokMSA_id:23948 Nitrospira sp. clone 2.9.4.366 OTU 1 seq prokMSA_id:63218 clone FW114 2.9.4.443 OTU 1 seq prokMSA_id:34433 clone GOUTA19 2.9.4.518 OTU 1 seq prokMSA_id:51852 Saltmarsh clone LCP-6 2.9.4.542 OTU 1 seq prokMSA_id:63221 clone FW19 2.9.4.544 OTU 1 seq prokMSA_id:63223 clone FW5 2.9.4.577 OTU 2 seqs prokMSA_id:27466 Nitrospira sp. SRI-237 prokMSA_id:46856 Nitrospira sp. SRI-9 AF255603 2.9.4.643 OTU 1 seq prokMSA_id:43630 Nitrospira sp. clone SUBT-7 2.9.4.655 OTU 1 seq prokMSA_id:77126 Nitrospirae clone S15A-MN30 2.9.4.681 OTU 1 seq prokMSA_id:63220 clone FW27 2.9.4.697 OTU 1 seq prokMSA_id:63224 clone FW118 2.9.4.982 OTU 1 seq prokMSA_id:30232 Nitrospira group MERTZ_2CM_109 2.10 PROSTHECOBACTER_GROUP 154 seqs 2.10.1 ENVIRONMENTAL_CLONE_WCHB1-41_SUBGROUP 46 seqs 2.10.1.108 OTU 1 seq prokMSA_id:25675 Verrucomicrobia MERTZ_21CM_62 2.10.1.111 OTU 1 seq prokMSA_id:62665 Verrucomicrobia clone ML635J-35 2.10.1.146 OTU 1 seq prokMSA_id:24730 Verrucomicrobia MERTZ_2CM_293 2.10.1.169 OTU 1 seq prokMSA_id:71809 Verrucomicrobia clone LD1-PA26 2.10.1.187 OTU 2 seqs prokMSA_id:1542 clone vadinHB65 prokMSA_id:31745 AA08 2.10.1.21 OTU 1 seq prokMSA_id:63770 Verrucomicrobia clone LD1-PB9 2.10.1.24 OTU 1 seq prokMSA_id:63772 Verrucomicrobia clone LD1-PB3 2.10.1.253 OTU 1 seq prokMSA_id:25775 Verrucomicrobia MERTZ_2CM_283 2.10.1.361 OTU 1 seq prokMSA_id:43552 clone KS52 2.10.1.40 OTU 1 seq prokMSA_id:39097 verrucomicrobium DEV055 clone DEV055 2.10.1.427 OTU 1 seq prokMSA_id:35755 equine intestinal clone:YT6 2.10.1.446 OTU 2 seqs prokMSA_id:63783 Verrucomicrobia clone LD1-PA37 prokMSA_id:63784 Verrucomicrobia clone LD1-PA34 2.10.1.469 OTU 1 seq prokMSA_id:38307 clone Car98rb 2.10.1.486 OTU 1 seq prokMSA_id:33256 verrucomicrobium DEV045 clone DEV045 2.10.1.491 OTU 1 seq prokMSA_id:1535 clone WCHA1-33 2.10.1.493 OTU 1 seq prokMSA_id:1536 clone WCHA1-80 2.10.1.496 OTU 1 seq prokMSA_id:1538 clone RFP12 2.10.1.504 OTU 1 seq prokMSA_id:1539 clone CLEAR-26 2.10.1.510 OTU 1 seq prokMSA_id:1540 clone WCHB1-41 2.10.1.521 OTU 1 seq prokMSA_id:1541 clone vadinBE97 2.10.1.525 OTU 1 seq prokMSA_id:1544 clone BURTON-54 2.10.1.526 OTU 1 seq prokMSA_id:1545 clone CLEAR-12 2.10.1.530 OTU 1 seq prokMSA_id:63771 Verrucomicrobia clone LD1-PB20 2.10.1.532 OTU 1 seq prokMSA_id:63774 Verrucomicrobia clone LD1-PB2 2.10.1.533 OTU 1 seq prokMSA_id:63776 Verrucomicrobia clone LD1-PB12 2.10.1.539 OTU 3 seqs prokMSA_id:33164 equine intestinal sp. DL14 clone DL14 prokMSA_id:44416 equine intestinal sp. DL12 clone DL12 prokMSA_id:45703 equine intestinal sp. PL16 clone PL16 2.10.1.547 OTU 1 seq prokMSA_id:63777 Verrucomicrobia clone LD1-PB1 2.10.1.559 OTU 1 seq prokMSA_id:63790 Verrucomicrobia clone LD1-PA20 2.10.1.586 OTU 1 seq prokMSA_id:1543 clone Sva0107a 2.10.1.615 OTU 1 seq prokMSA_id:39740 Verrucomicrobia MERTZ_2CM_235 2.10.1.629 OTU 1 seq prokMSA_id:70013 Verrucomicrobia clone LD1-PA50 2.10.1.686 OTU 1 seq prokMSA_id:70602 a2b018 2.10.1.692 OTU 1 seq prokMSA_id:37080 verrucomicrobiales Sva0585 2.10.1.760 OTU 3 seqs prokMSA_id:62664 Verrucomicrobia clone ML623J-15 prokMSA_id:63827 Verrucomicrobia clone ML316M-1 prokMSA_id:63828 Verrucomicrobia clone ML1228J-2 2.10.1.806 OTU 4 seqs prokMSA_id:61852 Verrucomicrobia clone R103-B35 prokMSA_id:61853 Verrucomicrobia clone R76-B18 prokMSA_id:61854 Verrucomicrobia clone R76-B66 prokMSA_id:61856 Verrucomicrobia clone R76-B128 2.10.1.885 OTU 1 seq prokMSA_id:69582 soil PBS-III-26 2.10.1.985 OTU 1 seq prokMSA_id:37973 soil PBS-III-20 2.10.2 VER.SP_STR_VEGLC2_SUBGROUP 19 seqs 2.10.2.103 OTU 1 seq prokMSA_id:39216 Rhizosphere soil clone RSC-II-64 2.10.2.110 OTU 1 seq prokMSA_id:33333 Verrucomicrobia MERTZ_2CM_57 2.10.2.29 OTU 6 seqs prokMSA_id:1550 clone HstpL11 prokMSA_id:1551 clone HstpL20 prokMSA_id:1552 clone HstpL53 prokMSA_id:1553 clone HstpL65 prokMSA_id:41135 Fucophilus fucoidanolyticus prokMSA_id:74031 CHAB-II-49 5' 2.10.2.433 OTU 1 seq prokMSA_id:63314 clone RCP2-6 2.10.2.554 OTU 1 seq prokMSA_id:1554 clone EKHO-20 2.10.2.555 OTU 1 seq prokMSA_id:1556 clone vadinHA64 2.10.2.567 OTU 1 seq prokMSA_id:1565 clone RB39 2.10.2.568 OTU 1 seq prokMSA_id:1566 clone TM18 2.10.2.646 OTU 5 seqs prokMSA_id:17862 rumen 2C28d-9 prokMSA_id:95381 Verrucomicrobia clone NE53 AJ575736 prokMSA_id:95864 Verrucomicrobia clone NE55 AJ575738 prokMSA_id:96571 Verrucomicrobia clone NE37 AJ575735 prokMSA_id:96658 Verrucomicrobia clone NE54 AJ575737 2.10.2.731 OTU 1 seq prokMSA_id:25549 FukuN111 2.10.3 ENVIRONMENTAL_CLONE_OPB35_SUBGROUP 20 seqs 2.10.3.11 OTU 1 seq prokMSA_id:17035 sludge H2 2.10.3.145 OTU 1 seq prokMSA_id:31747 verrucomicrobium DEV008 clone DEV008 2.10.3.293 OTU 1 seq prokMSA_id:52814 verrucomicrobium DEV114 clone DEV114 2.10.3.296 OTU 2 seqs prokMSA_id:30852 Chlamydiales/Verrucomicrobia group clone 1_29a AJ431300 prokMSA_id:37435 Agricultural soil clone SC-I-74 2.10.3.357 OTU 1 seq prokMSA_id:21798 verrucomicrobium DEV059 clone DEV059 2.10.3.399 OTU 1 seq prokMSA_id:35236 Verrucomicrobia EV107 2.10.3.44 OTU 1 seq prokMSA_id:27626 Rhizosphere soil clone RSC-II-18 2.10.3.560 OTU 1 seq prokMSA_id:63231 clone FW49 2.10.3.581 OTU 1 seq prokMSA_id:1572 clone OPB35 2.10.3.607 OTU 1 seq prokMSA_id:1585 clone RB01 2.10.3.610 OTU 1 seq prokMSA_id:1587 clone RB14 2.10.3.660 OTU 4 seqs prokMSA_id:26596 Verrucomicrobia EV134 prokMSA_id:27540 Verrucomicrobia EV106 prokMSA_id:41724 Verrucomicrobia EV104 AJ132482 prokMSA_id:54478 Verrucomicrobia EV102 AJ132480 2.10.3.712 OTU 2 seqs prokMSA_id:63232 clone FW4 prokMSA_id:72827 Verrucomicrobia clone 12-30 AF351215 2.10.3.772 OTU 1 seq prokMSA_id:81873 Verrucomicrobia clone VC12 2.10.3.820 OTU 1 seq prokMSA_id:31253 verrucomicrobium DEV020 clone DEV020 2.10.4 PRSB.DEJONGEII_SUBGROUP 35 seqs 2.10.4.1000 OTU 1 seq prokMSA_id:35295 verrucomicrobium DEV010 clone DEV010 2.10.4.1062 OTU 1 seq prokMSA_id:1594 clone HstpL102 2.10.4.1063 OTU 1 seq prokMSA_id:1596 Verrucomicrobium spinosum str. 145 DSM 4136 2.10.4.1065 OTU 1 seq prokMSA_id:1597 clone HstpL71 2.10.4.133 OTU 2 seqs prokMSA_id:23971 sludge A38 prokMSA_id:35008 sludge A21 2.10.4.203 OTU 6 seqs prokMSA_id:17463 clone S30-1 AJ400240 prokMSA_id:18109 clone L10-6 prokMSA_id:24442 isolate HuCC13 prokMSA_id:31006 clone HuCA18 prokMSA_id:35703 Verrucomicrobia CE59 prokMSA_id:57441 Verrucomicrobia clone P. palm A 54 AJ441243 2.10.4.222 OTU 3 seqs prokMSA_id:1598 clone BURTON-29. AF142847 prokMSA_id:53058 Verrucomicrobia MERTZ_0CM_215 prokMSA_id:59753 clone OB3_171 2.10.4.282 OTU 2 seqs prokMSA_id:47433 Crater Lake CL500-85 prokMSA_id:53214 verrucomicrobium DEV005 clone DEV005 AJ401105 2.10.4.288 OTU 3 seqs prokMSA_id:1588 Prosthecobacter dejongeii str. FC1 ATCC 27091 prokMSA_id:22941 FukuS27 prokMSA_id:91270 clone K2-30-31 AY344427 2.10.4.303 OTU 1 seq prokMSA_id:36316 Verrucomicrobia MERTZ_0CM_339 2.10.4.345 OTU 1 seq prokMSA_id:43995 Verrucomicrobia MERTZ_0CM_111 2.10.4.410 OTU 1 seq prokMSA_id:1601 clone ACE-12 2.10.4.414 OTU 1 seq prokMSA_id:1602 clone T62 2.10.4.430 OTU 1 seq prokMSA_id:43412 Agricultural soil clone SC-I-26 2.10.4.475 OTU 2 seqs prokMSA_id:17307 verrucomicrobium DEV006 clone DEV006 prokMSA_id:19930 verrucomicrobium DEV179 clone DEV179 2.10.4.531 OTU 1 seq prokMSA_id:46082 Verrucomicrobia Arctic96BD-2 2.10.4.613 OTU 1 seq prokMSA_id:55975 Verrucomicrobia clone P. palm C 85 2.10.4.661 OTU 1 seq prokMSA_id:1592 Prosthecobacter fusiformis str. FC4 DSM 8960 2.10.4.671 OTU 1 seq prokMSA_id:1593 Prosthecobacter vanneervenii str. FC2 ATCC 70019 2.10.4.868 OTU 1 seq prokMSA_id:26283 verrucomicrobium DEV064 clone DEV064 2.10.4.871 OTU 2 seqs prokMSA_id:79805 Verrucomicrobia clone BTM64 prokMSA_id:79963 Verrucomicrobia clone BTM48 2.10.4.9 OTU 1 seq prokMSA_id:45457 verrucomicrobium DEV132 clone DEV132 2.10.5 ENVIRONMENTAL_CLONE_WCHD3-88 9 seqs 2.10.5.223 OTU 1 seq prokMSA_id:1603 clone WCHD3-88 2.10.5.814 OTU 4 seqs prokMSA_id:28723 FukuN43 AJ290079 prokMSA_id:45580 FukuN18 prokMSA_id:73340 FukuN106 prokMSA_id:97376 Verrucomicrobia clone NE06 AJ575731 2.10.5.888 OTU 4 seqs prokMSA_id:29275 Candidatus Xiphinematobacter brevicolli prokMSA_id:37483 Candidatus Xiphinematobacter rivesi prokMSA_id:43374 Candidatus Xiphinematobacter americani prokMSA_id:65712 soil clone C1172 2.10.6 ENVIRONMENTAL_CLONE_DA101_SUBGROUP 25 seqs 2.10.6.155 OTU 1 seq prokMSA_id:1633 grassland soil sample approx. 15 mi. N of Pullman WA clone E 2.10.6.219 OTU 2 seqs prokMSA_id:48886 verrucomicrobium DEV035 clone DEV035 prokMSA_id:52421 verrucomicrobium DEV009 clone DEV009 2.10.6.249 OTU 1 seq prokMSA_id:82424 clone KD6-84 2.10.6.352 OTU 8 seqs prokMSA_id:44313 Metal-contaminated soil clone K20-28 prokMSA_id:51214 Metal-contaminated soil clone K20-07 prokMSA_id:61310 Verrucomicrobia clone SMS9.135WL AY043942 prokMSA_id:61313 Verrucomicrobia clone SMS9.23WL AY043944 prokMSA_id:61321 Verrucomicrobia clone NMS8.47WL prokMSA_id:61329 Verrucomicrobia clone NMW3.82WL AY043925 prokMSA_id:61490 Verrucomicrobia clone NOS7.72WL AY043729 prokMSA_id:65927 soil clone C0154 2.10.6.394 OTU 1 seq prokMSA_id:28009 verrucomicrobium DEV003 clone DEV003 2.10.6.417 OTU 1 seq prokMSA_id:1605 clone C019 2.10.6.418 OTU 1 seq prokMSA_id:1607 unnamed organism 2.10.6.420 OTU 1 seq prokMSA_id:1608 unnamed organism 2.10.6.50 OTU 1 seq prokMSA_id:43879 clone cvf122212 2.10.6.565 OTU 1 seq prokMSA_id:33602 Verrucomicrobia EV116 2.10.6.701 OTU 1 seq prokMSA_id:46832 Riz6E2 2.10.6.792 OTU 1 seq prokMSA_id:78274 Verrucomicrobia clone:Rs-P07 2.10.6.875 OTU 1 seq prokMSA_id:1622 clone LD19 2.10.6.876 OTU 1 seq prokMSA_id:1623 clone LD29 2.10.6.881 OTU 1 seq prokMSA_id:1624 clone DA101 2.10.6.892 OTU 1 seq prokMSA_id:1625 unnamed organism 2.10.6.911 OTU 1 seq prokMSA_id:1631 clone RB35 2.11 ANR.THERMOTERRENUM_GROUP 49 seqs 2.11.1013 OTU 1 seq prokMSA_id:1651 Aminobacterium mobilis str. ILE-3 2.11.117 OTU 1 seq prokMSA_id:78257 clone:Rs-D89 2.11.248 OTU 4 seqs prokMSA_id:1637 clone vadinCA02 prokMSA_id:1652 clone SYNE4. U46538 prokMSA_id:36934 clone TDC-S1:29 prokMSA_id:81485 MTCE-T2 11H 2.11.272 OTU 1 seq prokMSA_id:78385 low G+C Gram-positive clone:Rs-C88 2.11.297 OTU 1 seq prokMSA_id:1638 clone vadinHA73 2.11.353 OTU 1 seq prokMSA_id:82669 low G+C Gram-positive clone PD-UASB-13 2.11.359 OTU 1 seq prokMSA_id:1658 clone TUG14 2.11.467 OTU 2 seqs prokMSA_id:1653 clone OPB46 prokMSA_id:1654 clone OPB47 2.11.512 OTU 2 seqs prokMSA_id:1634 Anaerobaculum thermoterrenum str. RWcit ACM 5076 prokMSA_id:42039 Anaerobaculum mobile strain NGA 2.11.60 OTU 1 seq prokMSA_id:68344 Flexistipes sp. E3_33 E1 oral isolate 2.11.601 OTU 2 seqs prokMSA_id:50590 TA19 prokMSA_id:81956 MTCE-T2 8D 2.11.617 OTU 1 seq prokMSA_id:72767 O11D9 2.11.652 OTU 2 seqs prokMSA_id:78484 clone JG30-KF-AS13 AJ536888 prokMSA_id:78862 clone JG30-KF-CM45 2.11.677 OTU 2 seqs prokMSA_id:18164 tbr4-7 prokMSA_id:71796 tbr1-2 2.11.717 OTU 5 seqs prokMSA_id:1635 Desulfothiovibrio peptidovorans str. G4207. U52817 prokMSA_id:70882 Dethiosulfovibrio russensis strain sr13 DSM 12577 AF234543 prokMSA_id:71455 Dethiosulfovibrio marinus strain sr12 DSM 12538 AF234542 prokMSA_id:72749 Dethiosulfovibrio acidaminovorans prokMSA_id:72998 Dethiosulfovibrio russensis strain WS 100 DSM 12537 2.11.719 OTU 2 seqs prokMSA_id:30163 Flexistipes-like sp. oral clone BA121 prokMSA_id:86619 Synergistes sp. P4G_18 P1 2.11.726 OTU 1 seq prokMSA_id:1659 clone OPB72 2.11.740 OTU 1 seq prokMSA_id:49883 clone p-4292-4Wa3 2.11.808 OTU 11 seqs prokMSA_id:1642 clone BH017 prokMSA_id:1643 clone D084 prokMSA_id:1644 clone D006 prokMSA_id:1645 clone W028 prokMSA_id:1646 clone W090 prokMSA_id:47490 Flexistipes-like sp. oral clone BB062 prokMSA_id:68345 Firmicutes oral clone MCE3_120 E3 prokMSA_id:68348 Firmicutes oral clone MCE7_5 E2 prokMSA_id:71329 Flexistipes-like sp. oral clone BH007 prokMSA_id:92501 Deferribacteres sp. oral clone JV023 AY349372 prokMSA_id:92848 Deferribacteres sp. oral clone JV001 AY349370 2.11.915 OTU 1 seq prokMSA_id:1636 clone vadinBB02 2.11.961 OTU 1 seq prokMSA_id:1641 clone BB48 2.11.969 OTU 2 seqs prokMSA_id:66306 clone SHA-110 prokMSA_id:66918 clone SHA-1 2.11.974 OTU 1 seq prokMSA_id:19846 clone:BCf4-02 2.11.978 OTU 1 seq prokMSA_id:1649 Aminobacterium colombiense str. ALA-1 2.11.988 OTU 1 seq prokMSA_id:38526 clone:BCf7-04 2.12 ENVIRONMENTAL_CLONE_OPB2_GROUP 6 seqs 2.12.1015 OTU 1 seq prokMSA_id:17532 Banisveld landfill BVC56 2.12.1077 OTU 1 seq prokMSA_id:24187 clone Car90fb 2.12.398 OTU 1 seq prokMSA_id:1663 clone OPB2 2.12.408 OTU 1 seq prokMSA_id:1664 str. BD3-9 2.12.628 OTU 1 seq prokMSA_id:49231 clone GOUTB15 2.12.774 OTU 1 seq prokMSA_id:1665 str. BD4-9 2.13 NITROSPINA_SUBDIVISION 240 seqs 2.13.2 NITROSPINA_GROUP 12 seqs 2.13.2.1082 OTU 1 seq prokMSA_id:43480 Car184f 2.13.2.434 OTU 1 seq prokMSA_id:47701 delta SA71 2.13.2.444 OTU 1 seq prokMSA_id:1673 Nitrospina gracilis str. Nb-211 2.13.2.447 OTU 1 seq prokMSA_id:1675 str. BD4-10 2.13.2.580 OTU 1 seq prokMSA_id:19976 delta Arctic97A-12 2.13.2.594 OTU 2 seqs prokMSA_id:24687 GR-296.I.52 clone GR-296.I.52 prokMSA_id:28255 delta GR-296.I.86 2.13.2.769 OTU 1 seq prokMSA_id:70140 firmicute isolate ikaite un-c23 2.13.2.785 OTU 3 seqs prokMSA_id:28642 soil PBS-II-35 prokMSA_id:30315 soil PBS-II-5 prokMSA_id:36982 soil PBS-III-32 AJ390459 2.13.2.955 OTU 1 seq prokMSA_id:27569 delta Arctic95C-6 2.13.3 ENVIRONMENTAL_CLONE_OS_K_GROUP 3 seqs 2.13.3.453 OTU 1 seq prokMSA_id:1678 Pele's Vents clone PVB_36 2.13.3.546 OTU 1 seq prokMSA_id:20039 Ferribacter thermoautotrophicus clone KA2b 2.13.3.703 OTU 1 seq prokMSA_id:63800 candidate division WS3 clone LD1-PA13 2.13.4 ENVIRONMENTAL_CLONE_OPB5_GROUP 54 seqs 2.13.4.1073 OTU 1 seq prokMSA_id:41163 candidate division OP3 MERTZ_2CM_315 2.13.4.118 OTU 1 seq prokMSA_id:82144 clone KD1-1 2.13.4.152 OTU 1 seq prokMSA_id:53679 SHA-89 2.13.4.164 OTU 2 seqs prokMSA_id:25261 candidate division OP8 MERTZ_2CM_108 prokMSA_id:51674 candidate division OP8 MERTZ_21CM_72 2.13.4.165 OTU 3 seqs prokMSA_id:1701 str. NKB18 prokMSA_id:19789 clone Car60fc prokMSA_id:45395 candidate division OP8 MERTZ_21CM_147 AF424331 2.13.4.23 OTU 3 seqs prokMSA_id:1683 str. BD3-11 prokMSA_id:48834 strain NS1019 prokMSA_id:87958 planctomycete clone NS-61 AY283150 2.13.4.243 OTU 1 seq prokMSA_id:52397 Candidate division OP2 clone OPB25 complete 2.13.4.251 OTU 1 seq prokMSA_id:34948 'KTK 36' 2.13.4.3 OTU 12 seqs prokMSA_id:1682 str. KOLL2a prokMSA_id:19967 Anoxic biofilm clone Pla1-14 prokMSA_id:21761 Anoxic biofilm clone Pla2-19 prokMSA_id:29574 Anoxic biofilm clone Pla1-47 prokMSA_id:30943 Anoxic biofilm clone Pla2-10 prokMSA_id:32022 Anoxic biofilm clone Pla1-1 prokMSA_id:38720 anoxic sludge KU2 prokMSA_id:40152 Anoxic biofilm clone Pla1-44 prokMSA_id:40184 Anoxic biofilm clone Pla1-48 prokMSA_id:45461 Anoxic biofilm clone Pla2-48 prokMSA_id:48522 Anoxic biofilm clone Pla2-22 prokMSA_id:53683 Candidatus Kuenenia stuttgartiensis complete ; internal tran 2.13.4.325 OTU 1 seq prokMSA_id:70520 C1_B017 2.13.4.330 OTU 1 seq prokMSA_id:60591 clone G58 2.13.4.349 OTU 1 seq prokMSA_id:32255 soil PBS-25 2.13.4.379 OTU 1 seq prokMSA_id:30457 candidate division OP8 MERTZ_2CM_344 2.13.4.437 OTU 2 seqs prokMSA_id:78103 Termite group 1 clone:Rs-D43 prokMSA_id:78190 Termite group 1 clone:Rs-M73 2.13.4.438 OTU 1 seq prokMSA_id:1703 clone TG13 2.13.4.485 OTU 1 seq prokMSA_id:80983 clone O1aA90 2.13.4.492 OTU 1 seq prokMSA_id:1681 str. clone koll11 2.13.4.499 OTU 1 seq prokMSA_id:1688 clone KTK 32 2.13.4.505 OTU 1 seq prokMSA_id:23667 CtaxTah-42 2.13.4.506 OTU 1 seq prokMSA_id:17055 clone KS89 2.13.4.520 OTU 2 seqs prokMSA_id:23626 candidate division OP8 MERTZ_21CM_186 prokMSA_id:35212 candidate division OP8 MERTZ_2CM_346 2.13.4.540 OTU 1 seq prokMSA_id:70747 a2b031 2.13.4.598 OTU 1 seq prokMSA_id:33161 a2b010 2.13.4.605 OTU 1 seq prokMSA_id:36990 SBR2095 2.13.4.63 OTU 1 seq prokMSA_id:1705 clone WCHA1-39 2.13.4.65 OTU 1 seq prokMSA_id:1707 clone WCHA1-89 2.13.4.662 OTU 2 seqs prokMSA_id:1699 str. TIHP368-03 prokMSA_id:1700 str. TIHP368-11 2.13.4.69 OTU 1 seq prokMSA_id:73076 clone SHA-124 2.13.4.722 OTU 1 seq prokMSA_id:77986 Termite group 1 clone:Rs-H93 2.13.4.74 OTU 1 seq prokMSA_id:1708 clone WFeA1-35 2.13.4.811 OTU 2 seqs prokMSA_id:1680 clone OPB5 prokMSA_id:1684 clone OPB23 2.13.4.857 OTU 1 seq prokMSA_id:77032 clone GuBH2-AD-75 2.13.4.930 OTU 1 seq prokMSA_id:49483 candidate division OP8 MERTZ_21CM_86 2.13.4.993 OTU 1 seq prokMSA_id:77861 Termite group 1 clone:Rs-D95 2.13.5 ENVIRONMENTAL_CLONE_RB25_GROUP 16 seqs 2.13.5.105 OTU 1 seq prokMSA_id:78237 Holophaga sp. clone Hyd24-44 2.13.5.232 OTU 1 seq prokMSA_id:33996 clone KS63 2.13.5.373 OTU 1 seq prokMSA_id:45661 mle1-16 2.13.5.391 OTU 1 seq prokMSA_id:44715 MERTZ_2CM_263 2.13.5.442 OTU 1 seq prokMSA_id:73339 soil clone S0134 2.13.5.452 OTU 1 seq prokMSA_id:79044 Gram-positive isolate 5G01 2.13.5.465 OTU 1 seq prokMSA_id:1716 str. NKB17 2.13.5.468 OTU 1 seq prokMSA_id:1717 clone Sva0515 2.13.5.508 OTU 1 seq prokMSA_id:75917 Holophaga sp. clone JG37-AG-81 2.13.5.516 OTU 1 seq prokMSA_id:76459 clone JG34-KF-153 2.13.5.536 OTU 1 seq prokMSA_id:76461 clone GuBH2-AD-8 2.13.5.572 OTU 1 seq prokMSA_id:63239 clone FW144 2.13.5.591 OTU 1 seq prokMSA_id:73910 Holophaga sp. oral clone CA002 2.13.5.83 OTU 1 seq prokMSA_id:46217 delta MERTZ_21CM_290 2.13.5.97 OTU 1 seq prokMSA_id:1711 str. BD7-11 2.13.5.98 OTU 1 seq prokMSA_id:1712 clone TAYNAYA-25 2.13.6 ENVIRONMENTAL_CLONE_III1-8_GROUP 26 seqs 2.13.6.113 OTU 1 seq prokMSA_id:1718 clone iii1-8 2.13.6.125 OTU 1 seq prokMSA_id:1720 clone SJA-88 2.13.6.129 OTU 1 seq prokMSA_id:1722 clone CLEAR-14 2.13.6.226 OTU 3 seqs prokMSA_id:56349 soil clone S1146 prokMSA_id:65637 soil clone S1145 prokMSA_id:65891 soil clone C0200 2.13.6.333 OTU 2 seqs prokMSA_id:85300 clone D39 prokMSA_id:86560 clone D131 2.13.6.501 OTU 1 seq prokMSA_id:1724 clone Sva0450 2.13.6.541 OTU 1 seq prokMSA_id:76467 Holophaga sp. clone GuBH2-AG-47 2.13.6.588 OTU 2 seqs prokMSA_id:1719 clone SJA-36. AJ009461 prokMSA_id:84306 clone LKC2.127-11 2.13.6.704 OTU 1 seq prokMSA_id:60180 clone TK29 2.13.6.773 OTU 12 seqs prokMSA_id:1721 clone UC38fp prokMSA_id:17007 sponge symbiont RSWS25 AF434953 prokMSA_id:17935 sponge symbiont RSWS7 AF434962 prokMSA_id:18334 sponge symbiont RSWS3 prokMSA_id:19886 sponge symbiont RSWS9 AF434939 prokMSA_id:33722 sponge symbiont RSWS20 prokMSA_id:40884 sponge symbiont RSWS17 prokMSA_id:43895 sponge symbiont RSWS4 AF434959 prokMSA_id:48287 sponge symbiont RSWS2 AF434948 prokMSA_id:48870 sponge symbiont PAUC55 AF186440 prokMSA_id:51461 sponge symbiont PAUC54 AF186439 prokMSA_id:60768 sponge symbiont PAUC49 AF186436 2.13.6.95 OTU 1 seq prokMSA_id:78123 delta clone Hyd24-32 2.13.7 ENVIRONMENTAL_CLONE_32-20_GROUP 3 seqs 2.13.7.151 OTU 1 seq prokMSA_id:1728 clone 32-20 2.13.7.195 OTU 1 seq prokMSA_id:1731 clone PENDANT-12 2.13.7.227 OTU 1 seq prokMSA_id:75259 actinobacterium clone JG37-AG-36 2.13.8 HP.FOETIDA_GROUP 7 seqs 2.13.8.201 OTU 1 seq prokMSA_id:1732 Holophaga foetida str. TMBS4 DSM 6591 2.13.8.204 OTU 1 seq prokMSA_id:1733 clone SJA-87 2.13.8.208 OTU 1 seq prokMSA_id:76766 Holophaga sp. clone GuBH2-AD-9 2.13.8.386 OTU 1 seq prokMSA_id:1736 "Geothrix fermentans" 2.13.8.481 OTU 1 seq prokMSA_id:62398 clone FTLM45 2.13.8.482 OTU 1 seq prokMSA_id:62399 delta clone FTLM205 2.13.8.734 OTU 1 seq prokMSA_id:55664 Acidobacterium group clone FTLM5 2.13.9 ENVIRONMENTAL_CLONE_S027_GROUP 34 seqs 2.13.9.1024 OTU 1 seq prokMSA_id:83178 rumen clone BS5 2.13.9.1052 OTU 1 seq prokMSA_id:41153 Pietermaritzburg Y14-5 2.13.9.316 OTU 1 seq prokMSA_id:1750 unnamed organism 2.13.9.327 OTU 1 seq prokMSA_id:86097 clone FBP241 2.13.9.401 OTU 1 seq prokMSA_id:1769 clone P8 2.13.9.419 OTU 1 seq prokMSA_id:16287 species clone iii3-16 2.13.9.435 OTU 1 seq prokMSA_id:81698 Acidobacteria clone VC47 2.13.9.523 OTU 6 seqs prokMSA_id:16412 species clone 32-21 prokMSA_id:44004 17F9 prokMSA_id:75727 Holophaga sp. clone JG37-AG-149 prokMSA_id:76452 Acidobacteriales clone GR13 prokMSA_id:76977 Acidobacteriales clone GR14 prokMSA_id:84875 Acidobacteria clone BB-2-C9F 2.13.9.654 OTU 1 seq prokMSA_id:1791 clone S027 2.13.9.659 OTU 1 seq prokMSA_id:1793 unnamed organism 2.13.9.790 OTU 10 seqs prokMSA_id:1749 clone 11-25 prokMSA_id:1767 clone LB3-92 prokMSA_id:1768 clone LB3-30 prokMSA_id:47841 sludge H44 prokMSA_id:51292 sludge S6 prokMSA_id:56714 Acidobacterium group clone SBR1013 prokMSA_id:66557 clone SM1H07 prokMSA_id:75650 earthworm intestine clone wi14 prokMSA_id:86817 clone SM1H07 AY293402 prokMSA_id:88737 soil clone DS-249 AY289362 2.13.9.817 OTU 1 seq prokMSA_id:1772 unnamed organism 2.13.9.87 OTU 1 seq prokMSA_id:1776 clone 2951 2.13.9.872 OTU 1 seq prokMSA_id:1784 unnamed organism 2.13.9.874 OTU 1 seq prokMSA_id:1785 unnamed organism 2.13.9.884 OTU 1 seq prokMSA_id:1783 clone S023 2.13.9.916 OTU 1 seq prokMSA_id:1792 unnamed organism 2.13.9.929 OTU 1 seq prokMSA_id:1794 unnamed organism 2.13.9.938 OTU 1 seq prokMSA_id:1797 clone S111 2.13.9.948 OTU 1 seq prokMSA_id:1798 unnamed organism 2.13.11 ENVIRONMENTAL_CLONE_MB1228_GROUP 43 seqs 2.13.11.1047 OTU 1 seq prokMSA_id:1818 clone RB27 2.13.11.271 OTU 1 seq prokMSA_id:1808 clone ii3-36 2.13.11.273 OTU 1 seq prokMSA_id:1809 clone RFN4 2.13.11.306 OTU 1 seq prokMSA_id:1810 unnamed organism 2.13.11.314 OTU 1 seq prokMSA_id:1813 clone BPC015 2.13.11.315 OTU 1 seq prokMSA_id:1814 clone BPC066 2.13.11.321 OTU 1 seq prokMSA_id:1817 clone WCHA1-56 2.13.11.324 OTU 1 seq prokMSA_id:1819 clone BPC102 2.13.11.347 OTU 1 seq prokMSA_id:28670 sludge A22 2.13.11.350 OTU 1 seq prokMSA_id:85443 clone CCM15a 2.13.11.363 OTU 1 seq prokMSA_id:1821 unnamed organism 2.13.11.404 OTU 2 seqs prokMSA_id:35478 species clone mb3429 prokMSA_id:89660 Acidobacteria clone 23k22 genomic AY281352 2.13.11.431 OTU 1 seq prokMSA_id:59729 clone BB2_223 2.13.11.502 OTU 1 seq prokMSA_id:84610 clone CCM3a 2.13.11.517 OTU 1 seq prokMSA_id:46235 soil clone 576-2 2.13.11.53 OTU 1 seq prokMSA_id:31800 species clone iii1-15 2.13.11.622 OTU 1 seq prokMSA_id:80248 candidate division SPAM clone P2-8G 2.13.11.68 OTU 2 seqs prokMSA_id:32598 soil PBS-III-9 prokMSA_id:36561 soil PBS-III-27 2.13.11.706 OTU 14 seqs prokMSA_id:1807 clone DA008 prokMSA_id:1820 clone RB126. Z95716 prokMSA_id:28281 Agricultural soil clone SC-I-79 AJ252657 prokMSA_id:40242 Agricultural soil clone SC-I-21 AJ252624 prokMSA_id:43082 Agricultural soil clone SC-I-76 AJ252654 prokMSA_id:48016 species clone mb2431 prokMSA_id:74543 Agricultural soil clone SC-I-13 AJ252616 prokMSA_id:75545 Acidobacterium group clone JG36-TzT-99 prokMSA_id:75999 clone JG34-KF-113 prokMSA_id:76022 clone JG34-KF-337 prokMSA_id:76897 clone JG34-KF-257 prokMSA_id:78582 Holophaga sp. clone JG30a-KF-145 prokMSA_id:88876 soil clone DS-231 AY289378 prokMSA_id:93333 Acidobacteria clone JG36-GS-72 AJ582048 2.13.11.834 OTU 5 seqs prokMSA_id:1815 clone mb1228 prokMSA_id:17667 species clone mb2424 prokMSA_id:18226 species clone iii3-7 prokMSA_id:20725 soil clone 192-2 prokMSA_id:71241 mle1-25 2.13.11.867 OTU 2 seqs prokMSA_id:17129 sludge H3 prokMSA_id:45334 sludge A34 2.13.11.897 OTU 1 seq prokMSA_id:84221 clone CCM8b 2.13.11.91 OTU 1 seq prokMSA_id:53652 clone BA059 complete 2.13.12 ENVIRONMENTAL_CLONE_RB40_GROUP 42 seqs 2.13.12.100 OTU 1 seq prokMSA_id:76114 clone JG36-TzT-10 2.13.12.1014 OTU 1 seq prokMSA_id:52982 species clone ii3-15 2.13.12.102 OTU 1 seq prokMSA_id:51476 species clone mb2430 2.13.12.1040 OTU 1 seq prokMSA_id:46967 gold mine D15 2.13.12.1046 OTU 1 seq prokMSA_id:75514 clone JG34-KF-27 2.13.12.1049 OTU 1 seq prokMSA_id:1828 clone C112 2.13.12.13 OTU 1 seq prokMSA_id:76504 Acidobacterium group clone JG36-TzT-202 2.13.12.14 OTU 1 seq prokMSA_id:30759 NWCu002 2.13.12.176 OTU 1 seq prokMSA_id:75775 Holophaga sp. clone JG37-AG-112 2.13.12.209 OTU 1 seq prokMSA_id:76566 Holophaga sp. clone JG37-AG-29 2.13.12.267 OTU 1 seq prokMSA_id:77958 Fibrobacteres clone OF20 2.13.12.274 OTU 1 seq prokMSA_id:75044 Holophaga sp. clone JG37-AG-73 2.13.12.37 OTU 2 seqs prokMSA_id:76544 Holophaga sp. clone JG37-AG-99 prokMSA_id:83207 Acidobacteria clone BAC-14A1 AY214904 2.13.12.384 OTU 1 seq prokMSA_id:1829 unnamed organism 2.13.12.396 OTU 1 seq prokMSA_id:1833 clone DA023 2.13.12.403 OTU 1 seq prokMSA_id:1835 unnamed organism 2.13.12.415 OTU 1 seq prokMSA_id:49683 clone Tc67 2.13.12.450 OTU 1 seq prokMSA_id:1834 unnamed organism 2.13.12.500 OTU 6 seqs prokMSA_id:1827 clone C028 prokMSA_id:1854 clone RB24. Z95717 prokMSA_id:75589 Holophaga sp. clone JG37-AG-56 prokMSA_id:80372 Acidobacterium sp. clone CF7 prokMSA_id:82974 Acidobacteria clone WCB72 prokMSA_id:83511 Acidobacteria clone WCB122 2.13.12.548 OTU 1 seq prokMSA_id:76925 Holophaga sp. clone GuBH2-AD-16 2.13.12.569 OTU 1 seq prokMSA_id:23209 species clone ii3-12 2.13.12.582 OTU 1 seq prokMSA_id:65464 clone a13114 2.13.12.642 OTU 1 seq prokMSA_id:22391 species clone 32-10 2.13.12.66 OTU 1 seq prokMSA_id:75652 clone JG34-KF-135 2.13.12.674 OTU 2 seqs prokMSA_id:71357 Lake Michigan sediment LMBA20 and genes prokMSA_id:73082 Lake Michigan sediment LMBA20 2.13.12.877 OTU 1 seq prokMSA_id:1851 clone P65 2.13.12.879 OTU 1 seq prokMSA_id:1853 clone pB1-114 2.13.12.883 OTU 1 seq prokMSA_id:1856 clone P16 2.13.12.89 OTU 1 seq prokMSA_id:75679 Holophaga sp. clone JG37-AG-31 2.13.12.893 OTU 1 seq prokMSA_id:1857 clone RB40 2.13.12.896 OTU 1 seq prokMSA_id:1859 clone M19 2.13.12.964 OTU 1 seq prokMSA_id:77004 Holophaga sp. clone JG37-AG-145 2.13.12.987 OTU 1 seq prokMSA_id:76119 Acidobacterium group clone JG36-TzT-200 2.13.12.990 OTU 1 seq prokMSA_id:28512 #0319-7F19 2.13.12.994 OTU 1 seq prokMSA_id:77025 Holophaga sp. clone JG37-AG-117 2.14 FLS.SINUSARABICI_ASSEMBLAGE 18 seqs 2.14.1 OTU 10 seqs prokMSA_id:1867 str. UNSW2.6liv prokMSA_id:1868 str. HRI1cae. AF059187 prokMSA_id:1869 str. HRI3liv prokMSA_id:1871 str. UNSWRSp12. AF059190 prokMSA_id:1872 str. ASF 457 prokMSA_id:25453 clone p-2881-6C5 prokMSA_id:95638 Mucispirillum schaedleri strain HRI I17 AY387670 prokMSA_id:95739 Mucispirillum schaedleri strain UNSW I23 AY387671 prokMSA_id:96944 Mucispirillum schaedleri strain HRI I12 AY387669 prokMSA_id:97295 Mucispirillum schaedleri strain ABHU I23 AY387668 2.14.770 OTU 2 seqs prokMSA_id:1863 Deferribacter thermophilus str. BMA. U75602 prokMSA_id:70142 Deferribacter desulfuricans 2.14.797 OTU 2 seqs prokMSA_id:57548 Deferribacter sp. JR strain JR prokMSA_id:57551 Deferribacter sp. DR strain DR 2.14.918 OTU 1 seq prokMSA_id:1865 VC2.1 Bac9 complete 2.14.945 OTU 1 seq prokMSA_id:43329 Denitrovibrio acetophilus 2.14.962 OTU 1 seq prokMSA_id:1873 str. Lincoln Park 3 2.14.963 OTU 1 seq prokMSA_id:1875 Chrysiogenes arsenatis str. BAL-1 2.15 FLEXIBACTER-CYTOPHAGA-BACTEROIDES 1820 seqs 2.15.1 BACTEROIDES_AND_CYTOPHAGA 1329 seqs 2.15.1.2 BACTEROIDES_GROUP 656 seqs 2.15.1.2.1 RIK.MICROFUSUS_SUBGROUP 32 seqs 2.15.1.2.1.5253 OTU 1 seq prokMSA_id:80101 CFB group clone ML1218M-32 2.15.1.2.1.5256 OTU 1 seq prokMSA_id:77967 Bacteroidaceae clone:Rs-D38 2.15.1.2.1.5452 OTU 1 seq prokMSA_id:21213 clone p-1628-c5 2.15.1.2.1.5498 OTU 2 seqs prokMSA_id:1880 clone RC9 prokMSA_id:1881 clone RF2 2.15.1.2.1.5502 OTU 2 seqs prokMSA_id:22459 clone HuCA7 prokMSA_id:74420 adhufec73 2.15.1.2.1.5532 OTU 1 seq prokMSA_id:77751 CFB group clone:Rs-E47 2.15.1.2.1.5554 OTU 1 seq prokMSA_id:52441 clone p-2158-s959-3 2.15.1.2.1.5573 OTU 1 seq prokMSA_id:78222 CFB group clone:Rs-D44 2.15.1.2.1.5779 OTU 1 seq prokMSA_id:42845 clone RFLP 51E 2.15.1.2.1.5851 OTU 1 seq prokMSA_id:28923 equine intestinal sp. PW08 clone PW08 2.15.1.2.1.5889 OTU 1 seq prokMSA_id:77794 Bacteroidaceae clone:Rs-F73 2.15.1.2.1.5908 OTU 1 seq prokMSA_id:21326 clone TDC-S1:8 2.15.1.2.1.5982 OTU 1 seq prokMSA_id:70027 enrichment culture LET-13 clone II 2.15.1.2.1.6005 OTU 1 seq prokMSA_id:31264 equine intestinal sp. DL13 clone DL13 2.15.1.2.1.6025 OTU 1 seq prokMSA_id:38895 clone p-2202-s959-3 2.15.1.2.1.6032 OTU 2 seqs prokMSA_id:34085 clone HuCB23 AJ408997 prokMSA_id:61057 clone cadhufec17d09sav 2.15.1.2.1.6097 OTU 1 seq prokMSA_id:1878 clone vadinHA21 2.15.1.2.1.6096 OTU 1 seq prokMSA_id:19478 equine intestinal clone:YT14 2.15.1.2.1.6116 OTU 1 seq prokMSA_id:42791 equine intestinal clone:YT4 2.15.1.2.1.6134 OTU 1 seq prokMSA_id:1882 clone RF15 2.15.1.2.1.6133 OTU 1 seq prokMSA_id:20499 clone TDC-S5:22 2.15.1.2.1.6135 OTU 1 seq prokMSA_id:1883 clone RF28 2.15.1.2.1.6137 OTU 1 seq prokMSA_id:1884 clone WCHB1-29 2.15.1.2.1.6138 OTU 1 seq prokMSA_id:1885 clone vadinBC27 2.15.1.2.1.6139 OTU 1 seq prokMSA_id:1886 clone JW12 2.15.1.2.1.6173 OTU 2 seqs prokMSA_id:23709 Porphyromonas-like sp. oral clone DA064 prokMSA_id:55622 Bacteroidales oral clone MCE7_120 E3 2.15.1.2.1.6257 OTU 1 seq prokMSA_id:26475 equine intestinal sp. DW02 clone DW02 2.15.1.2.1.6277 OTU 1 seq prokMSA_id:28192 SHA-7 2.15.1.2.4 CY.FERMENTANS_SUBGROUP 63 seqs 2.15.1.2.4.5353 OTU 1 seq prokMSA_id:62390 Bacteroidetes clone FTLpost3 2.15.1.2.4.5361 OTU 1 seq prokMSA_id:27877 FukuN63 2.15.1.2.4.5410 OTU 1 seq prokMSA_id:66165 clone IIIB-28 2.15.1.2.4.5439 OTU 3 seqs prokMSA_id:56341 Bacteroidetes clone ML635J-40 prokMSA_id:79827 CFB group clone ML1228M-4 AF449769 prokMSA_id:80791 CFB group clone ML1228J-9 2.15.1.2.4.5443 OTU 1 seq prokMSA_id:27268 SHA-54 2.15.1.2.4.5475 OTU 2 seqs prokMSA_id:16567 SHA-25 prokMSA_id:52484 SHA-38 2.15.1.2.4.5501 OTU 1 seq prokMSA_id:21755 Cytophagales clone CD4D9 2.15.1.2.4.5511 OTU 1 seq prokMSA_id:78165 Cytophagales clone Hyd-B2-1 2.15.1.2.4.5534 OTU 1 seq prokMSA_id:49571 CFB group MERTZ_2CM_270 2.15.1.2.4.5540 OTU 1 seq prokMSA_id:49501 CFB group clone 8-1 2.15.1.2.4.5544 OTU 1 seq prokMSA_id:80197 clone KD3-17 2.15.1.2.4.5568 OTU 1 seq prokMSA_id:1899 clone WCHA2-47 2.15.1.2.4.5578 OTU 1 seq prokMSA_id:76499 bacteroidetes clone S15A-MN91 2.15.1.2.4.5650 OTU 1 seq prokMSA_id:49689 mRNA clone sipK20 2.15.1.2.4.5717 OTU 1 seq prokMSA_id:1900 clone WCHB1-69 2.15.1.2.4.5782 OTU 1 seq prokMSA_id:75791 Bacteroidetes Ko710 2.15.1.2.4.5783 OTU 1 seq prokMSA_id:62690 Bacteroidetes clone ML635J-15 2.15.1.2.4.5802 OTU 1 seq prokMSA_id:67037 clone SHA-94 2.15.1.2.4.5809 OTU 1 seq prokMSA_id:1902 clone EKHO-19 2.15.1.2.4.5808 OTU 1 seq prokMSA_id:1901 clone 1_60 2.15.1.2.4.5810 OTU 1 seq prokMSA_id:1903 clone BURTON-42 2.15.1.2.4.5814 OTU 1 seq prokMSA_id:1904 clone BURTON-5 2.15.1.2.4.5815 OTU 1 seq prokMSA_id:41113 CFB group MERTZ_2CM_347 2.15.1.2.4.5827 OTU 1 seq prokMSA_id:1906 clone vadinHA17 2.15.1.2.4.5830 OTU 1 seq prokMSA_id:1909 clone LD21 2.15.1.2.4.5850 OTU 2 seqs prokMSA_id:1898 clone WCHA1-01 prokMSA_id:26565 clone RFLP 92E 2.15.1.2.4.5854 OTU 1 seq prokMSA_id:1911 Cytophaga sp. str. BD1-16 2.15.1.2.4.5855 OTU 1 seq prokMSA_id:1912 Cytophaga sp. str. BD2-2 2.15.1.2.4.5856 OTU 1 seq prokMSA_id:1914 Cytophaga Cytophaga Sva1038 2.15.1.2.4.5874 OTU 1 seq prokMSA_id:57448 CFB group clone P. palm A 53 2.15.1.2.4.5880 OTU 1 seq prokMSA_id:82140 Bacteroidetes ANT9285 2.15.1.2.4.5892 OTU 2 seqs prokMSA_id:33956 from anoxic bulk soil clone BSV13 prokMSA_id:40718 from anoxic bulk soil clone BSV73 AJ229217 2.15.1.2.4.5890 OTU 1 seq prokMSA_id:82372 clone KD1-125 2.15.1.2.4.5900 OTU 2 seqs prokMSA_id:21344 isolate HOS19 Z88577 prokMSA_id:82792 Bacteroidetes clone 1A5 2.15.1.2.4.5921 OTU 1 seq prokMSA_id:34437 UASB_TL54 complete 2.15.1.2.4.5945 OTU 1 seq prokMSA_id:83262 Bacteroidetes clone LKC2.127-25 2.15.1.2.4.5947 OTU 1 seq prokMSA_id:57462 CFB group clone P. palm C/A 221 2.15.1.2.4.6038 OTU 1 seq prokMSA_id:46205 CFB group MERTZ_21CM_238 2.15.1.2.4.6046 OTU 1 seq prokMSA_id:66167 clone IIIB-1 2.15.1.2.4.6069 OTU 1 seq prokMSA_id:44257 E1-K9 2.15.1.2.4.6078 OTU 1 seq prokMSA_id:66189 clone IA-5 2.15.1.2.4.6101 OTU 1 seq prokMSA_id:26698 Cytophagales CE54 2.15.1.2.4.6114 OTU 1 seq prokMSA_id:26752 CFB group MERTZ_21CM_75 2.15.1.2.4.6155 OTU 1 seq prokMSA_id:1895 clone Phenol-4 2.15.1.2.4.6156 OTU 2 seqs prokMSA_id:21292 Cytophagales clone 26 prokMSA_id:40351 Cytophagales clone 17 2.15.1.2.4.6175 OTU 1 seq prokMSA_id:1897 clone WCHA1-14 2.15.1.2.4.6176 OTU 2 seqs prokMSA_id:42167 C1_B008 prokMSA_id:77623 clone Hyd89-65 2.15.1.2.4.6181 OTU 1 seq prokMSA_id:37588 CFB group MERTZ_2CM_232 2.15.1.2.4.6187 OTU 3 seqs prokMSA_id:20062 clone BA141 complete AF323769 prokMSA_id:40910 clone BA043 complete prokMSA_id:48692 clone BA029 complete AF323762 2.15.1.2.4.6226 OTU 1 seq prokMSA_id:81077 clone KD3-136 2.15.1.2.4.6233 OTU 1 seq prokMSA_id:59562 Bacteroidetes sp. oral clone FX069 2.15.1.2.4.6282 OTU 1 seq prokMSA_id:41715 UASB_TL13 complete 2.15.1.2.4.6317 OTU 1 seq prokMSA_id:75260 bacteroidetes clone S15A-MN128 2.15.1.2.5 ML.AGAROVORANS_SUBGROUP 8 seqs 2.15.1.2.5.5471 OTU 1 seq prokMSA_id:32729 clone P3IB-39 2.15.1.2.5.5865 OTU 1 seq prokMSA_id:1918 clone WCHB1-32 2.15.1.2.5.6278 OTU 6 seqs prokMSA_id:1905 clone SRang1.29. AF047618 prokMSA_id:1907 str. PB90-2. AJ229236 prokMSA_id:1908 str. XB45. AJ229237 prokMSA_id:51120 from anoxic bulk soil clone BSV85 AJ229229 prokMSA_id:81805 clone KD2-16 prokMSA_id:81865 clone KD2-19 AY218578 2.15.1.2.6 BAC.SPLANCHNICUS_SUBGROUP 3 seqs 2.15.1.2.6.5882 OTU 1 seq prokMSA_id:1920 clone TAYNAYA-26 2.15.1.2.6.5883 OTU 1 seq prokMSA_id:1921 clone SB-1 2.15.1.2.6.6076 OTU 1 seq prokMSA_id:73753 adhufec291 2.15.1.2.7 PPM.MACACAE_SUBGROUP 144 seqs 2.15.1.2.7.5295 OTU 1 seq prokMSA_id:72093 clone p-987-s962-5 2.15.1.2.7.5320 OTU 2 seqs prokMSA_id:1953 Bacteroides distasonis ATCC 8503 . M86695 prokMSA_id:85501 clone ABLCf15 2.15.1.2.7.5325 OTU 1 seq prokMSA_id:41295 KF-Gitt2-47 2.15.1.2.7.5343 OTU 1 seq prokMSA_id:1941 Porphyromonas cangingivalis VPB 4874 2.15.1.2.7.5349 OTU 1 seq prokMSA_id:78037 Bacteroidaceae clone:Rs-N74 2.15.1.2.7.5371 OTU 1 seq prokMSA_id:1950 Porphyromonas cansulci VPB 4875 2.15.1.2.7.5374 OTU 1 seq prokMSA_id:1952 Bacteroides merdae ATCC 43184 2.15.1.2.7.5373 OTU 1 seq prokMSA_id:1951 Porphyromonas canoris VPB 4882 2.15.1.2.7.5377 OTU 1 seq prokMSA_id:1955 clone RC16 2.15.1.2.7.5376 OTU 1 seq prokMSA_id:1954 clone RC2 2.15.1.2.7.5379 OTU 1 seq prokMSA_id:1957 clone RF36 2.15.1.2.7.5392 OTU 1 seq prokMSA_id:1958 clone RFN84 2.15.1.2.7.5393 OTU 1 seq prokMSA_id:1959 clone RFN96 2.15.1.2.7.5411 OTU 1 seq prokMSA_id:1960 clone adhufec77.25 2.15.1.2.7.5413 OTU 1 seq prokMSA_id:1963 clone BB23 2.15.1.2.7.5415 OTU 1 seq prokMSA_id:1969 clone RFN41 2.15.1.2.7.5414 OTU 1 seq prokMSA_id:1966 str. CDC Group DF-3 2.15.1.2.7.5429 OTU 1 seq prokMSA_id:28832 clone RFLP 2E 2.15.1.2.7.5467 OTU 4 seqs prokMSA_id:1942 clone RFN47. AB009203 prokMSA_id:1968 clone RFN12 prokMSA_id:1970 clone RFN43 prokMSA_id:1972 clone RFN86. AB009233 2.15.1.2.7.5469 OTU 1 seq prokMSA_id:1976 clone vadinHA28 2.15.1.2.7.5468 OTU 1 seq prokMSA_id:1975 clone vadinHA54 2.15.1.2.7.5496 OTU 1 seq prokMSA_id:32176 equine intestinal sp. PL40 clone PL40 2.15.1.2.7.5508 OTU 1 seq prokMSA_id:26171 equine intestinal YT7 2.15.1.2.7.5516 OTU 2 seqs prokMSA_id:18150 equine intestinal sp. CL14 clone CL14 prokMSA_id:28315 equine intestinal sp. ML14 clone ML14 2.15.1.2.7.5530 OTU 1 seq prokMSA_id:74492 Bacteroidetes clone BIci17 2.15.1.2.7.5537 OTU 2 seqs prokMSA_id:31170 clone p-2177-s959-3 prokMSA_id:35721 clone p-816-a5 2.15.1.2.7.5546 OTU 1 seq prokMSA_id:49573 TCE5 2.15.1.2.7.5557 OTU 1 seq prokMSA_id:51927 Bacteroides cf. forsythus oral clone BU063 2.15.1.2.7.5631 OTU 1 seq prokMSA_id:44678 Bacteroides sp. clone:BCf1-03 2.15.1.2.7.5634 OTU 1 seq prokMSA_id:86429 rumen clone BE25 2.15.1.2.7.5652 OTU 1 seq prokMSA_id:78288 Bacteroidaceae clone:Rs-D29 2.15.1.2.7.5664 OTU 1 seq prokMSA_id:78297 Bacteroidaceae clone:Rs-E83 2.15.1.2.7.5666 OTU 1 seq prokMSA_id:30407 equine intestinal sp. ML19 clone ML19 2.15.1.2.7.5676 OTU 1 seq prokMSA_id:37920 equine intestinal sp. CL08 clone CL08 2.15.1.2.7.5680 OTU 1 seq prokMSA_id:82191 Bacteroidaceae clone: Rs-106 2.15.1.2.7.5696 OTU 1 seq prokMSA_id:85590 rumen clone BE26 2.15.1.2.7.5713 OTU 10 seqs prokMSA_id:1931 Porphyromonas catoniae ATCC 51270 . X82823 prokMSA_id:18314 Porphyromonas sp. clone DS033 prokMSA_id:28623 Porphyromonas sp. oral clone BS045 prokMSA_id:30493 Porphyromonas sp. oral clone EP003 prokMSA_id:30507 Porphyromonas sp. oral clone BS077 prokMSA_id:72237 Porphyromonas sp. oral clone CW034 prokMSA_id:72284 Porphyromonas sp. oral clone BR037 prokMSA_id:72586 Porphyromonas sp. oral clone DP023 prokMSA_id:74406 Porphyromonas sp. oral clone AW032 prokMSA_id:94489 CFB group clone S15B-MN34 AJ583190 2.15.1.2.7.5719 OTU 1 seq prokMSA_id:41939 mRNA clone sipK57 2.15.1.2.7.5732 OTU 3 seqs prokMSA_id:1928 Bacteroides sp. str. sp4 prokMSA_id:1973 Bacteroides sp. str. sp14 prokMSA_id:66177 clone IIB-29 2.15.1.2.7.5752 OTU 2 seqs prokMSA_id:1943 clone RFN67 prokMSA_id:1971 clone RFN73 2.15.1.2.7.5761 OTU 1 seq prokMSA_id:46885 Bacteroides-like sp. oral clone AU126 2.15.1.2.7.5771 OTU 1 seq prokMSA_id:77581 CFB group clone:APe2_39 2.15.1.2.7.5781 OTU 1 seq prokMSA_id:27468 equine intestinal sp. MW16 clone MW16 2.15.1.2.7.5789 OTU 3 seqs prokMSA_id:84120 rumen clone BE29 prokMSA_id:84938 rumen clone BF25 prokMSA_id:84953 rumen clone BE18 2.15.1.2.7.5791 OTU 1 seq prokMSA_id:43915 Bacteroides sp. oral clone BU045 2.15.1.2.7.5800 OTU 7 seqs prokMSA_id:1938 str. PUS3.23 prokMSA_id:28004 Porphyromonas sp. oral clone F016 prokMSA_id:29149 Porphyromonas sp. oral clone AJ002 prokMSA_id:51233 Porphyromonas sp. oral clone BB134 AY005068 prokMSA_id:84092 Porphyromonas endodontalis ATCC 35406 prokMSA_id:84660 Porphyromonas sp. oral clone P4GB_100 P2 prokMSA_id:84799 Porphyromonas sp. oral clone P2PB_52 P1 2.15.1.2.7.5804 OTU 1 seq prokMSA_id:40523 clone p-262-o5 2.15.1.2.7.5806 OTU 2 seqs prokMSA_id:74495 adhufec55 prokMSA_id:81083 Bacteroides merdae 2.15.1.2.7.5817 OTU 1 seq prokMSA_id:77707 Bacteroidaceae clone:Rs-N56 2.15.1.2.7.5852 OTU 1 seq prokMSA_id:38316 clone:BCf7-02 2.15.1.2.7.5887 OTU 1 seq prokMSA_id:1923 clone RF17 2.15.1.2.7.5907 OTU 6 seqs prokMSA_id:1924 clone RFN37 prokMSA_id:1925 clone RFN50 prokMSA_id:1926 clone RFN6 prokMSA_id:1927 clone RFN79 prokMSA_id:17505 fiber-attaching rumen clone:SY26 prokMSA_id:84958 rumen clone BE36 2.15.1.2.7.5932 OTU 1 seq prokMSA_id:77773 Bacteroidaceae clone:Rs-P41 2.15.1.2.7.5943 OTU 32 seqs prokMSA_id:1948 Porphyromonas gingivalis ATCC 33277 . L16492 prokMSA_id:1962 Porphyromonas gingivalis DSM 20709 prokMSA_id:17881 Porphyromonas gingivalis prokMSA_id:18895 Porphyromonas gingivalis strain 27-PGI AF414817 prokMSA_id:26186 Porphyromonas gulae strain Manga 1.41 AF285869 prokMSA_id:31120 Porphyromonas gingivalis strain 30-PGI AF414820 prokMSA_id:32807 Porphyromonas gulae strain chien 4.2 prokMSA_id:33231 Porphyromonas gingivalis strain 26-PGI AF414816 prokMSA_id:33300 Porphyromonas gingivalis strain ATCC 33277 prokMSA_id:33338 Porphyromonas gingivalis strain:SUNY1021 prokMSA_id:34895 Porphyromonas gingivalis strain 1-PGI AF414810 prokMSA_id:35758 Porphyromonas gingivalis strain 40-PGI AF414813 prokMSA_id:35989 Porphyromonas gulae prokMSA_id:36451 Porphyromonas gingivalis strain 25-PGI AF414815 prokMSA_id:39994 Porphyromonas gulae strain ours 3.1 prokMSA_id:42789 Porphyromonas gingivalis strain 28-PGI prokMSA_id:42871 Porphyromonas gulae prokMSA_id:42887 Porphyromonas gingivalis strain 2-PGI prokMSA_id:44500 Porphyromonas gingivalis strain 42-PGI prokMSA_id:46900 Porphyromonas gingivalis strain:A7A1-28 prokMSA_id:47786 Porphyromonas gulae strain B 243 prokMSA_id:49110 Porphyromonas gingivalis strain:W83 prokMSA_id:49606 Porphyromonas gingivalis AF285870 prokMSA_id:53253 Porphyromonas gingivalis strain:ATCC33277 prokMSA_id:71486 Porphyromonas gingivalis strain 29-PGI AF414819 prokMSA_id:71638 Porphyromonas gulae strain chat 3.1 prokMSA_id:74161 Porphyromonas gingivalis strain 3-PGI AF414812 prokMSA_id:93277 Porphyromonas gingivalis W83 section 8 of 8 of the complete prokMSA_id:93513 Porphyromonas gingivalis W83 complete genome NC_002950 prokMSA_id:93631 Porphyromonas gingivalis W83 section 1 of 8 of the complete prokMSA_id:93824 Porphyromonas gingivalis W83 section 5 of 8 of the complete prokMSA_id:93948 Porphyromonas gingivalis W83 section 6 of 8 of the complete 2.15.1.2.7.5952 OTU 1 seq prokMSA_id:28974 clone p-1862-c3 2.15.1.2.7.5961 OTU 2 seqs prokMSA_id:55494 clone IA-16 prokMSA_id:79914 Bacteroidetes clone GalB60 2.15.1.2.7.5963 OTU 2 seqs prokMSA_id:1929 Bacteroides ASF519 str. ASF 519 prokMSA_id:69900 mpn-isolate group 6 2.15.1.2.7.5990 OTU 1 seq prokMSA_id:19082 clone:BCf5-08 2.15.1.2.7.5998 OTU 1 seq prokMSA_id:84869 rumen clone BS9 2.15.1.2.7.6009 OTU 1 seq prokMSA_id:77928 Bacteroidaceae clone:Rs-J02 2.15.1.2.7.6022 OTU 1 seq prokMSA_id:45315 clone L7-16 2.15.1.2.7.6088 OTU 1 seq prokMSA_id:31626 Bacteroidales str. WB4 2.15.1.2.7.6117 OTU 1 seq prokMSA_id:41054 clone RFLP 40E 2.15.1.2.7.6214 OTU 12 seqs prokMSA_id:1922 Bacteroides forsythus FDC 331 prokMSA_id:22635 Bacteroides forsythus strain:Sai5 prokMSA_id:34893 Bacteroides forsythus strain:KM3 prokMSA_id:36831 Bacteroides forsythus strain:FJ1 prokMSA_id:38366 Bacteroides forsythus strain:HG3 prokMSA_id:38992 Bacteroides forsythus strain:Ko3 prokMSA_id:40709 Bacteroides forsythus strain:G9 prokMSA_id:40924 Bacteroides forsythus strain:KS16 AB053944 prokMSA_id:46214 Bacteroides forsythus strain:L7 prokMSA_id:46574 Bacteroides forsythus strain:TR6 AB053947 prokMSA_id:49167 Bacteroides forsythus strain:HA3 prokMSA_id:51467 Bacteroides forsythus strain:ATCC43037 2.15.1.2.7.6263 OTU 1 seq prokMSA_id:84193 rumen clone BE20 2.15.1.2.7.6262 OTU 1 seq prokMSA_id:40059 ckncm156-F1M.2H5 2.15.1.2.7.6280 OTU 1 seq prokMSA_id:36893 AA17 2.15.1.2.7.6288 OTU 1 seq prokMSA_id:26510 ckncm163-F3M.1B4 2.15.1.2.8 BAC.FRAGILIS_SUBGROUP 106 seqs 2.15.1.2.8.5264 OTU 1 seq prokMSA_id:43829 clone L7-17 2.15.1.2.8.5275 OTU 1 seq prokMSA_id:73683 Bacteroides sp. 253c 2.15.1.2.8.5285 OTU 1 seq prokMSA_id:2030 Bacteroides stercoris ATCC 43183 2.15.1.2.8.5299 OTU 1 seq prokMSA_id:2033 clone adhufec12.25 2.15.1.2.8.5298 OTU 1 seq prokMSA_id:29526 TAYNAYA-27 2.15.1.2.8.5303 OTU 1 seq prokMSA_id:2036 clone RFN2 2.15.1.2.8.5302 OTU 1 seq prokMSA_id:2034 clone JW16 2.15.1.2.8.5306 OTU 1 seq prokMSA_id:2037 clone RFN46 2.15.1.2.8.5326 OTU 2 seqs prokMSA_id:2043 clone adhufec26.25 prokMSA_id:24383 adhufec151 AF132239 2.15.1.2.8.5329 OTU 1 seq prokMSA_id:2045 Bacteroides acidofaciens 2.15.1.2.8.5360 OTU 1 seq prokMSA_id:73937 clone p-1273-a5 2.15.1.2.8.5390 OTU 1 seq prokMSA_id:24616 fiber-attaching rumen clone:SY30 2.15.1.2.8.5424 OTU 2 seqs prokMSA_id:2035 Bacteroides eggerthii NCTC 11185 prokMSA_id:70488 Bacteroides eggerthii 2.15.1.2.8.5425 OTU 1 seq prokMSA_id:37022 Bacteroides ovatus 2.15.1.2.8.5441 OTU 3 seqs prokMSA_id:33268 clone HuCB3 prokMSA_id:45060 clone HuCA9 prokMSA_id:52020 clone HuCA36 2.15.1.2.8.5450 OTU 2 seqs prokMSA_id:1988 Bacteroides sp. str. BV-1 prokMSA_id:50342 clone HuCA21 2.15.1.2.8.5454 OTU 5 seqs prokMSA_id:25154 Bacteroidetes clone BIfciii40 AJ318126 prokMSA_id:47890 Dysgonomonas gadei strain 1145589 Y18530 prokMSA_id:78080 Bacteroidaceae clone:Rs-M21 prokMSA_id:81335 Bacteroidaceae clone: Rs-008 prokMSA_id:91816 Dysgonomonas shahii strain CCUG 43457 AJ319867 2.15.1.2.8.5474 OTU 3 seqs prokMSA_id:1992 Bacteroides acidofaciens str. A24 prokMSA_id:1994 Bacteroides acidofaciens str. A31 prokMSA_id:1998 Bacteroides acidofaciens str. A43 2.15.1.2.8.5489 OTU 2 seqs prokMSA_id:1986 Bacteroides caccae ATCC 43185 prokMSA_id:74577 adhufec51 AF132273 2.15.1.2.8.5510 OTU 1 seq prokMSA_id:77508 26-4b2 2.15.1.2.8.5551 OTU 4 seqs prokMSA_id:2020 Bacteroides uniformis ATCC 8492 . L16486 prokMSA_id:2024 Bacteroides AR20 str. AR20. AF139524 prokMSA_id:28973 adhufec153 prokMSA_id:47157 Bacteroides uniformis 2.15.1.2.8.5556 OTU 1 seq prokMSA_id:34809 rumen 4C0d-8 2.15.1.2.8.5577 OTU 2 seqs prokMSA_id:41973 clone p-1018-a5 prokMSA_id:52212 clone p-1091-a5 2.15.1.2.8.5593 OTU 1 seq prokMSA_id:79483 clone M2 2.15.1.2.8.5596 OTU 3 seqs prokMSA_id:30861 Bacteroides sp. 139 prokMSA_id:46819 Swine fecal FPC111 prokMSA_id:89392 Bacteroides sp. 111 AJ514255 2.15.1.2.8.5621 OTU 1 seq prokMSA_id:82138 MTCE-T2 3G 2.15.1.2.8.5627 OTU 1 seq prokMSA_id:43091 adhufec303 2.15.1.2.8.5651 OTU 1 seq prokMSA_id:78342 Bacteroidaceae clone:Rs-F14 2.15.1.2.8.5698 OTU 1 seq prokMSA_id:2044 clone 12-129 2.15.1.2.8.5759 OTU 1 seq prokMSA_id:52362 E1-K8 2.15.1.2.8.5768 OTU 1 seq prokMSA_id:73517 Prevotella sp. oral clone BU035 2.15.1.2.8.5823 OTU 1 seq prokMSA_id:26888 clone p-218-o5 2.15.1.2.8.5837 OTU 1 seq prokMSA_id:71331 adhuf