1 ARCHAEA 123 seqs 1.1 EURYARCHAEOTA 108 seqs 1.1.1 METHANOCOCCALES 4 seqs 1.1.1.1 MC.JANNASCHII_GROUP 1 seq 1.1.1.1.1 OTU 1 seq prokMSA_id:26 Methanococcus thermolithotrophicus str. SN-1 DSM 2095 1.1.1.2 MC.MARIPALUDIS_GROUP 3 seqs 1.1.1.2.2 OTU 1 seq prokMSA_id:37 Methanococcus vannielii str. EY33 1.1.1.2.3 OTU 2 seqs prokMSA_id:42 Methanococcus maripaludis str. D. NONE prokMSA_id:43 Methanococcus maripaludis str. LL 1.1.2 METHANOBACTERIALES 15 seqs 1.1.2.1 MT.FERVIDUS_GROUP 1 seq 1.1.2.1.4 OTU 1 seq prokMSA_id:46 Methanothermus fervidus 1.1.2.2 METHANOBACTERIUM_GROUP 14 seqs 1.1.2.2.1 MB.FORMICICUM_SUBGROUP 11 seqs 1.1.2.2.1.5 OTU 3 seqs prokMSA_id:78 Methanobacterium ivanovii str. Ivanov OCM 140 prokMSA_id:79 Methanobacterium bryantii str. RiH2 prokMSA_id:80 Methanobacterium bryantii str. BKYH 1.1.2.2.1.6 OTU 4 seqs prokMSA_id:198 Methanobacterium formicicum DSM 1312 prokMSA_id:214 Methanobacterium sp. str. BRM12 prokMSA_id:27169 clone AC103 prokMSA_id:72084 clone A1 1.1.2.2.1.7 OTU 2 seqs prokMSA_id:117 Methanobrevibacter arboriphilicus str. DH1 DSM 1536. NONE prokMSA_id:24414 Methanobrevibacter arboriphilus 1.1.2.2.1.8 OTU 1 seq prokMSA_id:57 Methanosphaera stadtmanae str. MCB-3 DSM 3091 1.1.2.2.1.9 OTU 1 seq prokMSA_id:177 Methanobacterium bryantii str. M.o.H. DSM 863 1.1.2.2.2 MB.THERMOAUTOTROPHICUM_SUBGROUP 3 seqs 1.1.2.2.2.10 OTU 3 seqs prokMSA_id:222 Methanobacterium thermoautotrophicum str. CB12 OCM 36 prokMSA_id:229 Methanobacterium thermoautotrophicum str. CB12 ATCC 43574 prokMSA_id:81334 Methanothermobacter wolfeii 1.1.3 METHANOMICROBACTERIA_AND_RELATIVES 78 seqs 1.1.3.1 METHANOMICROBIALES 31 seqs 1.1.3.1.1 MCU.BOURGENSE_SUBGROUP 24 seqs 1.1.3.1.1.11 OTU 7 seqs prokMSA_id:257 Methanomicrobium mobile str. BP DSM 1539 . M59142 prokMSA_id:17305 sheep rumen methanogen clone 52 prokMSA_id:19264 sheep rumen methanogen clone 19 prokMSA_id:28725 sheep rumen methanogen clone 48 prokMSA_id:31665 sheep rumen methanogen clone 34 prokMSA_id:44117 sheep rumen methanogen clone 46 prokMSA_id:50770 rumen methanogen Hole9 1.1.3.1.1.12 OTU 1 seq prokMSA_id:262 Methanogenium cariaci str. JR1 ATCC 35093 1.1.3.1.1.13 OTU 1 seq prokMSA_id:265 Methanogenium organophilum 1.1.3.1.1.14 OTU 1 seq prokMSA_id:295 Methanoculleus marisnigri str. CoCam 1.1.3.1.1.15 OTU 1 seq prokMSA_id:297 Methanoculleus sp 1.1.3.1.1.16 OTU 1 seq prokMSA_id:304 Methanoculleus thermophilicus str. TCI DSM 3915 1.1.3.1.1.17 OTU 6 seqs prokMSA_id:267 Methanoculleus palmolei str. INSLUZ DSM 4273 prokMSA_id:294 Methanoculleus marisnigri str. JR1 ATCC 35101 . M59134 prokMSA_id:26720 Methanoculleus chikugoensis strain:MG62 prokMSA_id:48306 clone GW60-13-24 prokMSA_id:70145 Methanoculleus submarinus prokMSA_id:91502 Methanoculleus thermophilicus 1.1.3.1.1.18 OTU 1 seq prokMSA_id:260 Methanoplanus petrolearius SEBR 4847 1.1.3.1.1.19 OTU 5 seqs prokMSA_id:308 Methanoculleus olentangyi str. RC/ER OCM 52 . AF095270 prokMSA_id:316 Methanoculleus bourgense str. MS2 ATCC 43281 . NONE prokMSA_id:317 Methanoculleus bourgensis str. MS2. AF095269 prokMSA_id:318 Methanoculleus olentangyi str. RC/ER ATCC 35293 . NONE prokMSA_id:69300 Methanoculleus oldenburgensis 1.1.3.1.2 MF.TATIONIS_SUBGROUP 6 seqs 1.1.3.1.2.20 OTU 5 seqs prokMSA_id:322 Methanofollis tationis DSM 2702 . NONE prokMSA_id:328 Methanofollis liminatans str. GKZPZ DSM 4140 prokMSA_id:329 Methanofollis liminatans DSM 10196 prokMSA_id:333 Methanofollis tationis DSM 2702 . AF095272 prokMSA_id:334 Methanofollis liminatans str. GKZPZ DSM 4140 . AF095271 1.1.3.1.2.21 OTU 1 seq prokMSA_id:22804 Methanofollis sp. N2F9704 1.1.3.1.3 MSP.HUNGATEI_SUBGROUP 1 seq 1.1.3.1.3.22 OTU 1 seq prokMSA_id:43804 clone AC43 1.1.3.2 METHANOSARCINALES 8 seqs 1.1.3.2.1 METHANOSARCINA_AND_RELATIVES 8 seqs 1.1.3.2.1.23 OTU 1 seq prokMSA_id:426 Methanococcoides burtonii DSM 6242 1.1.3.2.1.24 OTU 2 seqs prokMSA_id:362 Methanococcoides methylutens str. TMA-10 DSM 2657 . M59127 prokMSA_id:44725 Methanococcoides sp. strain NaT1 1.1.3.2.1.25 OTU 1 seq prokMSA_id:361 Methanococcoides euhalobius 1.1.3.2.1.26 OTU 1 seq prokMSA_id:439 Methanosarcina mazei str. Go1 1.1.3.2.1.27 OTU 3 seqs prokMSA_id:416 Methanosarcina barkeri str. 227 DSM 1538. M59144 prokMSA_id:490 Methanosarcina barkeri str. MS DSM 800 prokMSA_id:514 Methanosarcina barkeri str. CM1 1.1.3.4 HALOPHILIC_ARCHAEA 39 seqs 1.1.3.4.2 HF.VOLCANII_SUBGROUP 7 seqs 1.1.3.4.2.28 OTU 7 seqs prokMSA_id:604 Haloferax volcanii str. DS-2 ATCC 29605 prokMSA_id:608 Haloferax D1227 str. D1227 prokMSA_id:92166 Haloferax sp. M5 prokMSA_id:92267 Haloferax sp. M16 prokMSA_id:92724 Haloferax sp. M14 prokMSA_id:93058 Haloferax sp. M7 prokMSA_id:95310 Haloferax volcanii strain NCIMB 2012 1.1.3.4.3 HR.SACCHAROVORUM_SUBGROUP 6 seqs 1.1.3.4.3.29 OTU 3 seqs prokMSA_id:612 Halobacterium sp. str. Ch2 ACM 3911 prokMSA_id:615 Halorubrum distributum str. I-M JCM 9100 prokMSA_id:42756 Halobacterium=halophilic Ch2 Genomic 1469 nt 1.1.3.4.3.30 OTU 3 seqs prokMSA_id:623 Halorubrum saccharovorum NCIMB 2081 . X53570 prokMSA_id:625 Halorubrum saccharovorum JCM 8865 prokMSA_id:35023 Halobacterium saccharovorum part 3 X53572 1.1.3.4.4 HB.HALOBIUM_SUBGROUP 13 seqs 1.1.3.4.4.31 OTU 13 seqs prokMSA_id:633 Halobacterium halobium str. R1 prokMSA_id:634 Halobacterium halobium str. R1 prokMSA_id:635 Halobacterium 9R str. 9R prokMSA_id:637 Halobacterium halobium prokMSA_id:23901 Halobacterium sp. NCIMB 741 prokMSA_id:32933 Halobacterium sp. NRC-1 section 159 of 170 of the complete g prokMSA_id:40871 Halobacterium sp. NCIMB 733 prokMSA_id:47635 Halobacterium sp. JP-6 prokMSA_id:48009 Halobacterium sp. NRC-1 complete genome prokMSA_id:50435 Halobacterium salinarum prokMSA_id:54099 Halobacterium sp. NRC-1 complete genome prokMSA_id:63193 Halobacterium salinarum strain DSM 3754T prokMSA_id:68649 Halobacterium sp. JCM 9447 1.1.3.4.6 NTC.AMYLOLYTICUS_SUBGROUP 1 seq 1.1.3.4.6.32 OTU 1 seq prokMSA_id:668 Natrialba magadii NCIMB 2190 1.1.3.4.7 HC.MORRHUAE_SUBGROUP 8 seqs 1.1.3.4.7.33 OTU 8 seqs prokMSA_id:686 Halococcus morrhuae NRC 16008 prokMSA_id:687 Halococcus morrhuae prokMSA_id:688 Halorubrum trapanicum JCM 8979 prokMSA_id:689 Halococcus morrhuae str. LD.3.1 C.B. van Niel ATCC 17082 prokMSA_id:27023 Halobacterium sp. NCIMB 765 rrnB operon prokMSA_id:38435 Halobacterium sp. NCIMB 765 operon prokMSA_id:39472 Halococcus dombrowskii strain H4 prokMSA_id:83880 Halococcus qingdaogense complete 1.1.3.4.8 HAR.VALLISMORTIS_SUBGROUP 4 seqs 1.1.3.4.8.34 OTU 4 seqs prokMSA_id:697 Haloarcula japonica str. TR-1 JCM 7785 prokMSA_id:702 Haloarcula aidinensis str. B-2 prokMSA_id:71110 Haloarcula sinaiiensis complete prokMSA_id:87898 Haloarcula altuensis 1.1.4 THERMOCOCCALES 10 seqs 1.1.4.3 PC.FURIOSUS_SUBGROUP 1 seq 1.1.4.3.35 OTU 1 seq prokMSA_id:768 Thermococcus chitonophagus str. GC74 DSM 10152 1.1.4.4 TC.CELER_SUBGROUP 9 seqs 1.1.4.4.36 OTU 9 seqs prokMSA_id:777 Thermococcus hydrothermalis str. AL662 prokMSA_id:784 Thermococcus celer str. VU 13 DSM 2476 prokMSA_id:789 Thermococcus barossii prokMSA_id:800 VC2.1 Arc5 complete prokMSA_id:803 VC2.1 Arc35 complete prokMSA_id:54583 Thermococcus sp. MZ12 ; internal transcribed spacer complete prokMSA_id:55014 Thermococcus sp. MZ6 ; internal transcribed spacer complete prokMSA_id:89817 Thermococcus sp. TS2 prokMSA_id:90070 Thermococcus sp. TS1 1.1.5 METHANOPYRALES 1 seq 1.1.5.37 OTU 1 seq prokMSA_id:822 Methanopyrus kandleri str. av19 DSM 6324 1.2 CRENARCHAEOTA 15 seqs 1.2.1 THERMOPHILIC_CRENARCHAEOTA 15 seqs 1.2.1.3 TMF.PENDENS_SUBGROUP 1 seq 1.2.1.3.38 OTU 1 seq prokMSA_id:826 Thermofilum pendens str. Hvv3 DSM 2475 1.2.1.4 PYB.ISLANDICUM_SUBGROUP 11 seqs 1.2.1.4.39 OTU 10 seqs prokMSA_id:868 Pyrobaculum islandicum str. geo3. L07511 prokMSA_id:869 Pyrobaculum aerophilum str. IM2 DSM 7523 prokMSA_id:870 Pyrobaculum neutrophilum str. NZ1 prokMSA_id:873 Thermoproteus neutrophilus JCM 9278 prokMSA_id:20435 Pyrobaculum arsenaticum strain PZ6 prokMSA_id:34186 Pyrobaculum organotrophum strain:JCM 9190 prokMSA_id:44220 Pyrobaculum oguniense prokMSA_id:54372 Pyrobaculum aerophilum strain IM2 section 98 of 201 of the c prokMSA_id:64505 Pyrobaculum aerophilum complete genome prokMSA_id:78804 Pyrobaculum calidifontis complete 1.2.1.4.40 OTU 1 seq prokMSA_id:872 Thermoproteus tenax 1.2.1.5 PYRODICTIALES 1 seq 1.2.1.5.1 PYR.OCCULTUM_SUBGROUP 1 seq 1.2.1.5.1.41 OTU 1 seq prokMSA_id:879 Pyrodictium occultum str. PL-19 DSM 2709 1.2.1.6 SULFOLOBUS_SUBGROUP_I 2 seqs 1.2.1.6.1 SUL.SOLFATARICUS_SUBGROUP 2 seqs 1.2.1.6.1.42 OTU 2 seqs prokMSA_id:938 Sulfolobus solfataricus str. Ron 12/III prokMSA_id:940 Sulfolobus shibatae str. B12 DSM 5389 2 BACTERIA 8732 seqs 2.1 THERMOPHILIC_OXYGEN_REDUCERS 16 seqs 2.1.43 OTU 12 seqs prokMSA_id:1199 Calderobacterium hydrogenophilum str. Z-829 . Z30242 prokMSA_id:1207 clone OPS132. AF027104 prokMSA_id:1209 Hydrogenobacter thermophilus str. T3. Z30189 prokMSA_id:1210 Hydrogenobacter subterranea str. HGP1 prokMSA_id:16683 Hydrogenobacter sp. MV4L2B strain MV4L2B AJ320214 prokMSA_id:18011 Hydrogenobacter sp. PA14 strain PA16 prokMSA_id:25858 Aquificales str. SS5H1 prokMSA_id:33986 Hydrogenobacter sp. BB4L1B strain BB4L1B prokMSA_id:60606 clone R57 prokMSA_id:60621 clone Y04 prokMSA_id:60624 clone Sed01 AF407673 prokMSA_id:67859 Bacillus sp. clone DGG36 2.1.44 OTU 1 seq prokMSA_id:32822 Aquifex sp. Gri14L3B strain Gri14L3B 2.1.45 OTU 1 seq prokMSA_id:51871 Aquificales pIce1 2.1.46 OTU 1 seq prokMSA_id:1187 Aquifex pyrophilus 2.1.47 OTU 1 seq prokMSA_id:1211 str. EM 17 2.2 THERMOTOGALES 12 seqs 2.2.3 FERVIDOBACTERIUM_GROUP 6 seqs 2.2.3.48 OTU 1 seq prokMSA_id:999992 SYN Fer.nodosm 2.2.3.49 OTU 5 seqs prokMSA_id:1221 Fervidobacterium islandicum str. H-21 DSM 5733 . M59176 prokMSA_id:1224 clone OPS196 prokMSA_id:1225 clone OPS69B prokMSA_id:18702 Fervidobacterium islandicum strain AW-1 prokMSA_id:32030 Thermotogales sp. SRI-251 2.2.5 THERMOTOGA_GROUP 2 seqs 2.2.5.50 OTU 2 seqs prokMSA_id:1232 Thermotoga thermarum str. LA3. NONE prokMSA_id:38910 Thermotoga thermarum 2.2.6 TT.MARITIMA_GROUP 3 seqs 2.2.6.51 OTU 3 seqs prokMSA_id:24284 Thermotoga maritima strain FJSS3-B.1 AJ401021 prokMSA_id:40929 Thermotoga sp. RQ7 strain RQ7 AJ401023 prokMSA_id:41353 Thermotoga neapolitana 2.2.7 ENVIRONMENTAL_CLONE_OPB7_GROUP 1 seq 2.2.7.52 OTU 1 seq prokMSA_id:1241 str. EM 3 2.4 STRAIN.EM_19 2 seqs 2.4.53 OTU 2 seqs prokMSA_id:1251 str. EM 19 prokMSA_id:16693 clone BH81 complete 2.7 GREEN_NON-SULFUR_BACTERIA_AND_RELATIVES 69 seqs 2.7.1 CHLOROFLEXUS_SUBDIVISION 17 seqs 2.7.1.2 ENVIRONMENTAL_CLONE_T78_GROUP 17 seqs 2.7.1.2.54 OTU 6 seqs prokMSA_id:2741 clone WCHB1-80 prokMSA_id:2742 clone WCHB1-44 prokMSA_id:2745 clone SJA-108. AJ009483 prokMSA_id:65482 SHD-197 prokMSA_id:66091 green nonsulfur clone:KB40 prokMSA_id:91629 clone SR_FBR_L52 2.7.1.2.55 OTU 11 seqs prokMSA_id:1873 str. Lincoln Park 3. AF157057 prokMSA_id:15703 Anaeroplasma abactoclasticum str. 6-1 ATCC 27879 . M25050 prokMSA_id:29228 clone CRP99-27 prokMSA_id:51154 Crater Lake CL500-11 prokMSA_id:88892 Lactobacillus kefirgranum strain CECT 5919T prokMSA_id:95575 Lactobacillus kefiranofaciens subsp. kefiranofaciens strain prokMSA_id:96399 Lactobacillus kefiranofaciens subsp. kefiranofaciens strain prokMSA_id:96446 Lactobacillus kefiranofaciens subsp. kefirgranum strain LMG prokMSA_id:96876 Lactobacillus kefiranofaciens subsp. kefirgranum strain R-12 prokMSA_id:97970 actinobacterium clone S11 prokMSA_id:98433 2 from Patent WO03053158 2.7.2 DEINOCOCCUS-THERMUS_SUBDIVISION 52 seqs 2.7.2.1 THERMUS_GROUP 47 seqs 2.7.2.1.1 T.THERMOPHILUS_SUBGROUP 36 seqs 2.7.2.1.1.56 OTU 21 seqs prokMSA_id:1360 Thermus filiformis prokMSA_id:1383 Thermus sp. str. W28 A.1 prokMSA_id:1384 Thermus sp. str. Tok8 A.1 prokMSA_id:1385 Thermus sp. str. Tok20 A.1 prokMSA_id:1388 Thermus sp. str. Tok3 A.1 prokMSA_id:1392 Thermus sp. str. Rt4 1A. L09669 prokMSA_id:1393 Thermus sp. str. OK6 A.1 prokMSA_id:1394 Thermus sp. str. T351 prokMSA_id:38282 Thermus sp. clone prokMSA_id:41572 Thermus rehai prokMSA_id:60604 clone R75 AF407694 prokMSA_id:60605 clone R58 prokMSA_id:60615 clone Y71 prokMSA_id:60622 clone Y03 prokMSA_id:63588 Thermus sp. RH-1514 prokMSA_id:63589 Thermus sp. RH-1214 prokMSA_id:63592 Thermus sp. RH-914 prokMSA_id:67864 Thermus sp. clone DFQ34 prokMSA_id:67865 Thermus sp. clone DFQ28 prokMSA_id:67866 Thermus sp. clone DFQ37 prokMSA_id:67868 Thermus sp. clone DFQ6 2.7.2.1.1.57 OTU 1 seq prokMSA_id:60620 clone Y10 2.7.2.1.1.58 OTU 14 seqs prokMSA_id:1317 Thermus sp. str. YSPID A.1 prokMSA_id:1318 clone OPB19 prokMSA_id:1319 clone OPB31. AF027020 prokMSA_id:1322 clone OPS25. AF027024 prokMSA_id:1323 clone OPT60. AF027025 prokMSA_id:1325 Thermus sp. str. ZHGIB A.4. L10071 prokMSA_id:1345 Thermus aquaticus str. YT-1 prokMSA_id:1348 Thermus sp. str. ZHGI A.1 prokMSA_id:16358 AT425_EubC9 prokMSA_id:17962 Thermus sp. SRI-248 prokMSA_id:24092 Thermus kawarayuensis prokMSA_id:29817 Thermus/Deinococcus group clone SM1A01 AF445644 prokMSA_id:30085 Thermus brockianus strain 15038T prokMSA_id:87174 Deinococci clone FL08D03 2.7.2.1.3 MEI.RUBER_SUBGROUP 11 seqs 2.7.2.1.3.59 OTU 11 seqs prokMSA_id:1400 Meiothermus ruber prokMSA_id:1401 Meiothermus ruber str. 16105 prokMSA_id:1402 Meiothermus ruber str. 16106 prokMSA_id:17405 Meiothermus rosaceus prokMSA_id:20802 Meiothermus taiwanensis strain WR-220 prokMSA_id:26209 Meiothermus taiwanensis strain WR-30T prokMSA_id:56011 Thermus sp. R55-10 prokMSA_id:56267 clone G21 prokMSA_id:60593 clone G34 prokMSA_id:60612 clone R03 prokMSA_id:69769 Meiothermus sp. R55-11 AF407750 2.7.2.2 DEINOCOCCUS_GROUP 5 seqs 2.7.2.2.60 OTU 3 seqs prokMSA_id:1417 Deinococcus radiodurans DSM 20539 prokMSA_id:25349 Deinococcus radiodurans DC prokMSA_id:55007 Deinococcus radiodurans chromosome 1 complete 2.7.2.2.61 OTU 2 seqs prokMSA_id:1418 Deinococcus radiodurans ATCC 35073 prokMSA_id:94705 Deinococcus sp. clone S15B-MN92 AJ583206 2.9 LEPTOSPIRILLUM-NITROSPIRA 4 seqs 2.9.3 LEPTOSPIRILLUM_GROUP 2 seqs 2.9.3.1 LPP.FERROOXIDANS_SUBGROUP 2 seqs 2.9.3.1.62 OTU 2 seqs prokMSA_id:1500 Leptospirillum sp. DSM 2391. M79383 prokMSA_id:38108 Leptospirillum sp. strain DSM 2391 2.9.4 TDV.YELLOWSTONII_GROUP 2 seqs 2.9.4.63 OTU 1 seq prokMSA_id:52153 clone T26-8 2.9.4.64 OTU 1 seq prokMSA_id:1513 Magnetobacterium bavaricum 2.10 PROSTHECOBACTER_GROUP 2 seqs 2.10.3 ENVIRONMENTAL_CLONE_OPB35_SUBGROUP 2 seqs 2.10.3.65 OTU 2 seqs prokMSA_id:1572 clone OPB35 prokMSA_id:98706 clone EA1G3 2.13 NITROSPINA_SUBDIVISION 3 seqs 2.13.4 ENVIRONMENTAL_CLONE_OPB5_GROUP 2 seqs 2.13.4.66 OTU 1 seq prokMSA_id:95059 clone S15B-MN72 2.13.4.67 OTU 1 seq prokMSA_id:1705 clone WCHA1-39 2.13.9 ENVIRONMENTAL_CLONE_S027_GROUP 1 seq 2.13.9.68 OTU 1 seq prokMSA_id:1743 clone UC37f 2.15 FLEXIBACTER-CYTOPHAGA-BACTEROIDES 503 seqs 2.15.1 BACTEROIDES_AND_CYTOPHAGA 397 seqs 2.15.1.2 BACTEROIDES_GROUP 141 seqs 2.15.1.2.1 RIK.MICROFUSUS_SUBGROUP 1 seq 2.15.1.2.1.69 OTU 1 seq prokMSA_id:90426 rumen clone JRCH33 2.15.1.2.4 CY.FERMENTANS_SUBGROUP 15 seqs 2.15.1.2.4.70 OTU 1 seq prokMSA_id:38359 clone CR98-24-27 2.15.1.2.4.71 OTU 1 seq prokMSA_id:16567 SHA-25 2.15.1.2.4.72 OTU 2 seqs prokMSA_id:20574 CFB group MERTZ_0CM_331 prokMSA_id:32224 CFB group MERTZ_2CM_35 2.15.1.2.4.73 OTU 3 seqs prokMSA_id:1896 clone WCHB1-53 prokMSA_id:1897 clone WCHA1-14 prokMSA_id:80197 clone KD3-17 2.15.1.2.4.74 OTU 2 seqs prokMSA_id:17582 CFB group MERTZ_21CM_344 prokMSA_id:27443 clone Car44rc 2.15.1.2.4.75 OTU 1 seq prokMSA_id:41113 CFB group MERTZ_2CM_347 2.15.1.2.4.76 OTU 2 seqs prokMSA_id:26684 AT425_EubA4 prokMSA_id:81494 clone KD2-88 2.15.1.2.4.77 OTU 2 seqs prokMSA_id:55494 clone IA-16 AJ488070 prokMSA_id:75791 Bacteroidetes Ko710 2.15.1.2.4.78 OTU 1 seq prokMSA_id:48262 CFB group MERTZ_21CM_3 2.15.1.2.7 PPM.MACACAE_SUBGROUP 51 seqs 2.15.1.2.7.79 OTU 1 seq prokMSA_id:81083 Bacteroides merdae 2.15.1.2.7.80 OTU 1 seq prokMSA_id:46885 Bacteroides-like sp. oral clone AU126 2.15.1.2.7.81 OTU 1 seq prokMSA_id:66177 clone IIB-29 2.15.1.2.7.82 OTU 3 seqs prokMSA_id:46168 Bacteroidetes clone BIui18 prokMSA_id:74492 Bacteroidetes clone BIci17 prokMSA_id:91816 Dysgonomonas shahii strain CCUG 43457 2.15.1.2.7.83 OTU 1 seq prokMSA_id:47720 strain MR36D 2.15.1.2.7.84 OTU 1 seq prokMSA_id:1928 Bacteroides sp. str. sp4 2.15.1.2.7.85 OTU 13 seqs prokMSA_id:1942 clone RFN47 prokMSA_id:1967 clone RF16. AF001748 prokMSA_id:1968 clone RFN12. AB009171 prokMSA_id:1970 clone RFN43 prokMSA_id:1971 clone RFN73. AB009221 prokMSA_id:1972 clone RFN86 prokMSA_id:35289 Cytophagales clone CD4A9 prokMSA_id:43796 Cytophagales clone CD4A4 prokMSA_id:56220 Rumen YS3 prokMSA_id:56307 CFB group clone CD4A2 prokMSA_id:85200 rumen clone BF3 prokMSA_id:90061 rumen clone JRCI27 prokMSA_id:90380 rumen clone JRCI18 2.15.1.2.7.86 OTU 1 seq prokMSA_id:1975 clone vadinHA54 2.15.1.2.7.87 OTU 1 seq prokMSA_id:1976 clone vadinHA28 2.15.1.2.7.88 OTU 1 seq prokMSA_id:88774 rumen clone JRCI12 2.15.1.2.7.89 OTU 1 seq prokMSA_id:90370 rumen clone JRCI26 2.15.1.2.7.90 OTU 20 seqs prokMSA_id:1948 Porphyromonas gingivalis ATCC 33277 . L16492 prokMSA_id:17881 Porphyromonas gingivalis prokMSA_id:26186 Porphyromonas gulae strain Manga 1.41 prokMSA_id:32807 Porphyromonas gulae strain chien 4.2 prokMSA_id:35745 Porphyromonas gingivalis strain:FDC 381 prokMSA_id:35989 Porphyromonas gulae prokMSA_id:39994 Porphyromonas gulae strain ours 3.1 prokMSA_id:42871 Porphyromonas gulae prokMSA_id:46900 Porphyromonas gingivalis strain:A7A1-28 prokMSA_id:47786 Porphyromonas gulae strain B 243 prokMSA_id:49110 Porphyromonas gingivalis strain:W83 prokMSA_id:49606 Porphyromonas gingivalis prokMSA_id:53253 Porphyromonas gingivalis strain:ATCC33277 prokMSA_id:71638 Porphyromonas gulae strain chat 3.1 AF285871 prokMSA_id:84660 Porphyromonas sp. oral clone P4GB_100 P2 prokMSA_id:93277 Porphyromonas gingivalis W83 section 8 of 8 of the complete prokMSA_id:93513 Porphyromonas gingivalis W83 complete genome prokMSA_id:93631 Porphyromonas gingivalis W83 section 1 of 8 of the complete prokMSA_id:93824 Porphyromonas gingivalis W83 section 5 of 8 of the complete prokMSA_id:93948 Porphyromonas gingivalis W83 section 6 of 8 of the complete 2.15.1.2.7.91 OTU 4 seqs prokMSA_id:28004 Porphyromonas sp. oral clone F016 AY005069 prokMSA_id:29149 Porphyromonas sp. oral clone AJ002 prokMSA_id:84092 Porphyromonas endodontalis ATCC 35406 prokMSA_id:84799 Porphyromonas sp. oral clone P2PB_52 P1 AY207054 2.15.1.2.7.92 OTU 2 seqs prokMSA_id:1933 Porphyromonas circumdentaria NCTC 12469 . L26102 prokMSA_id:63166 Porphyromonas canis 2.15.1.2.8 BAC.FRAGILIS_SUBGROUP 34 seqs 2.15.1.2.8.100 OTU 1 seq prokMSA_id:93000 Prevotella sp. oral clone ID019 2.15.1.2.8.101 OTU 4 seqs prokMSA_id:2005 Bacteroides fragilis str. Bfr901 prokMSA_id:2006 Bacteroides fragilis str. Bfr920. X83946 prokMSA_id:43091 adhufec303 prokMSA_id:73683 Bacteroides sp. 253c AY082449 2.15.1.2.8.102 OTU 1 seq prokMSA_id:28056 clone p-194-o5 2.15.1.2.8.103 OTU 1 seq prokMSA_id:25165 clone HuCA34 2.15.1.2.8.104 OTU 1 seq prokMSA_id:24578 isolate HuCC30 2.15.1.2.8.105 OTU 2 seqs prokMSA_id:2041 Bacteroides sp. U58214 prokMSA_id:88496 clone YRCB34 2.15.1.2.8.106 OTU 1 seq prokMSA_id:2016 Bacteroides fragilis str. TAL3636 2.15.1.2.8.107 OTU 1 seq prokMSA_id:2038 Bacteroides sp 2.15.1.2.8.93 OTU 1 seq prokMSA_id:2037 clone RFN46 2.15.1.2.8.94 OTU 1 seq prokMSA_id:18983 clone F2 2.15.1.2.8.95 OTU 1 seq prokMSA_id:50289 equine intestinal sp. PW13 clone PW13 2.15.1.2.8.96 OTU 7 seqs prokMSA_id:2020 Bacteroides uniformis ATCC 8492 . L16486 prokMSA_id:2021 Bacteroides uniformis prokMSA_id:2022 Bacteroides uniformis prokMSA_id:2023 Bacteroides uniformis. U58254 prokMSA_id:2024 Bacteroides AR20 str. AR20 prokMSA_id:60914 84634 prokMSA_id:71193 clone S2A AF481813 2.15.1.2.8.97 OTU 2 seqs prokMSA_id:2040 Bacteroides sp prokMSA_id:2042 Bacteroides sp 2.15.1.2.8.98 OTU 2 seqs prokMSA_id:34809 rumen 4C0d-8 prokMSA_id:47181 clone p-1005-a5 2.15.1.2.8.99 VARIOUS 8 seqs 2.15.1.2.10 PRV.BRYANTII_SUBGROUP 1 seq 2.15.1.2.10.108 OTU 1 seq prokMSA_id:30061 equine intestinal sp. PW14 clone PW14 2.15.1.2.11 PRV.RUMINICOLA_SUBGROUP 1 seq 2.15.1.2.11.109 OTU 1 seq prokMSA_id:2135 clone JW17 2.15.1.2.12 PRV.BUCCAE_SUBGROUP 10 seqs 2.15.1.2.12.110 OTU 7 seqs prokMSA_id:2172 clone RC17 prokMSA_id:2173 Prevotella buccae str. 938.11 ATCC 33690. L16478 prokMSA_id:2178 Prevotella buccae str. VPI D3A-6 ATCC 33574 . L16477 prokMSA_id:16549 clone p-1031-a5 prokMSA_id:24907 clone p-2190-s959-3 prokMSA_id:39371 ckncm293-c5b1 prokMSA_id:56320 Prevotella sp. E9_42 E4 oral isolate 2.15.1.2.12.111 OTU 1 seq prokMSA_id:92510 Prevotella sp. oral clone FL019 2.15.1.2.12.112 OTU 1 seq prokMSA_id:76393 Prevotella sp. RS2 2.15.1.2.12.113 OTU 1 seq prokMSA_id:89232 Prevotella oralis 2.15.1.2.13 PRV.NIGRESCENS_SUBGROUP 28 seqs 2.15.1.2.13.114 OTU 3 seqs prokMSA_id:2193 Prevotella disiens ATCC 29426 . L16483 prokMSA_id:2196 Prevotella corporis ATCC 33547 . L16465 prokMSA_id:63123 clone MB-A2-107 2.15.1.2.13.115 OTU 8 seqs prokMSA_id:2048 Prevotella bryantii str. B14 DSM 11371 prokMSA_id:2049 clone RF23 prokMSA_id:2050 clone 12-4 prokMSA_id:23685 rumen 5C3d-4 prokMSA_id:39885 rumen 3C3d-16 prokMSA_id:52763 rumen 5C3d-8 prokMSA_id:68338 Prevotella sp. E7_56 E3 oral isolate prokMSA_id:71710 clone p-993-s962-5 AF371898 2.15.1.2.13.116 OTU 6 seqs prokMSA_id:2228 Prevotella denticola ATCC 33185. L16466 prokMSA_id:22951 Prevotella sp. oral clone AU069 prokMSA_id:55854 Prevotella sp. E7_34 E1 oral isolate prokMSA_id:60257 Prevotella sp. P2A_FAAD4 strain P2A_FAAD4 prokMSA_id:71907 Prevotella sp. oral clone FX046 AY134905 prokMSA_id:88701 Prevotella denticola AY323524 2.15.1.2.13.117 OTU 1 seq prokMSA_id:18221 rumen 4C3d-6 2.15.1.2.13.118 OTU 1 seq prokMSA_id:2216 Prevotella RZ str. RZ 2.15.1.2.13.119 OTU 1 seq prokMSA_id:92223 Prevotella sp. oral clone GI030 2.15.1.2.13.120 OTU 4 seqs prokMSA_id:2176 Prevotella dentalis str. ES2645 DSM 3688 . X81876 prokMSA_id:2188 Prevotella veroralis ATCC 33779 . L16473 prokMSA_id:2200 Prevotella albensis str. M384 DSM 11370 prokMSA_id:91187 Prevotella genomosp. P6 clone P4PB_24 2.15.1.2.13.121 OTU 4 seqs prokMSA_id:2183 Prevotella oris ATCC 33573 . L16474 prokMSA_id:2224 str. PUS3.3 prokMSA_id:45107 Prevotella sp. oral clone F045 AY005056 prokMSA_id:73517 Prevotella sp. oral clone BU035 AF385564 2.15.1.3 CYTOPHAGA_GROUP_I 251 seqs 2.15.1.3.2 MSC.AGGREGANS_SUBGROUP 2 seqs 2.15.1.3.2.122 OTU 1 seq prokMSA_id:58645 Flexibacter aggregans subsp. catalaticus strain:IFO 15977 2.15.1.3.2.123 OTU 1 seq prokMSA_id:81782 clone KD3-110 2.15.1.3.3 BLT.SP_SUBGROUP 1 seq 2.15.1.3.3.124 OTU 1 seq prokMSA_id:2238 Blattabacterium sp 2.15.1.3.4 EMB.BREVIS_SUBGROUP 19 seqs 2.15.1.3.4.125 OTU 1 seq prokMSA_id:86113 Bacteroidetes clone 1G12 2.15.1.3.4.126 OTU 4 seqs prokMSA_id:2477 str. Koll-22. AJ224942 prokMSA_id:22035 GR-WP33-44 prokMSA_id:46544 clone CRP99-73 prokMSA_id:80707 CFB group clone ML310M-46 2.15.1.3.4.127 OTU 14 seqs prokMSA_id:2247 Ornithobacterium rhinotracheale str. D95-36425 prokMSA_id:2248 Ornithobacterium rhinotracheale LMG 9086 prokMSA_id:2249 Ornithobacterium rhinotracheale LMG 11553 prokMSA_id:2250 Ornithobacterium rhinotracheale LMG 15870 prokMSA_id:2251 Ornithobacterium rhinotracheale LMG 11554 prokMSA_id:2427 Cytophaga sp. str. J18-M01 prokMSA_id:2428 Cytophaga sp. str. AA8-2 prokMSA_id:2429 Cytophaga sp. str. AA8-3 prokMSA_id:23950 CFB group A0653 AF236016 prokMSA_id:30792 clone CR99-2-27 prokMSA_id:59360 clone HP1A39 prokMSA_id:70738 Marine ALUS253_6 AF359551 prokMSA_id:77851 Cytophaga sp. TUT1013 prokMSA_id:79767 Kordia algicida 2.15.1.3.10 F.FLEVENSE_SUBGROUP 8 seqs 2.15.1.3.10.128 OTU 3 seqs prokMSA_id:2371 Coenonia anatina LMG 14382 . Y17612 prokMSA_id:31284 Coenonia anatina prokMSA_id:39294 Cytophagales clone 15 2.15.1.3.10.129 OTU 4 seqs prokMSA_id:2254 Empedobacter brevis M59052 prokMSA_id:41958 clone CRP99-42 prokMSA_id:44265 FukuN36 prokMSA_id:62957 clone LPU28 2.15.1.3.10.130 OTU 1 seq prokMSA_id:59796 clone OB3_227 2.15.1.3.11 FLX.MARITIMUS_SUBGROUP 4 seqs 2.15.1.3.11.131 OTU 2 seqs prokMSA_id:92204 Flavobacteriaceae G121102s2_3 prokMSA_id:92882 Flavobacteriaceae G121102s2_2 AY353819 2.15.1.3.11.132 OTU 2 seqs prokMSA_id:36375 Polaribacter sp. clone MERTZ_0CM_405 prokMSA_id:43261 SIC.917 2.15.1.3.12 CAP.OCHRACEA_SUBGROUP 10 seqs 2.15.1.3.12.133 OTU 9 seqs prokMSA_id:2370 Capnocytophaga ochracea str. 25 ATCC 33596 prokMSA_id:2373 Capnocytophaga sputigena ATCC 33612 prokMSA_id:2374 Capnocytophaga sputigena str. 897 CIP 100 prokMSA_id:2382 Capnocytophaga gingivalis ATCC 33624 prokMSA_id:23229 Capnocytophaga sp. oral clone BU084 prokMSA_id:33071 Selenomonas sp. clone DS051 prokMSA_id:70542 Capnocytophaga sp. clone DS022 AF366270 prokMSA_id:71957 Capnocytophaga sp. oral clone DZ074 AF385494 prokMSA_id:73111 Capnocytophaga sp. oral clone BR085 AY134894 2.15.1.3.12.134 OTU 1 seq prokMSA_id:2392 Capnocytophaga canimorsus str. CalHlthDept 2340-2-61 ATCC 35 2.15.1.3.13 CY.ULIGINOSA_SUBGROUP 30 seqs 2.15.1.3.13.135 OTU 7 seqs prokMSA_id:20824 Tenacibaculum ovolyticus strain:IFO15992 prokMSA_id:24142 Tenacibaculum ovolyticus strain:IFO15993 prokMSA_id:25568 CFB group MERTZ_0CM_112 prokMSA_id:28646 CFB group MERTZ_0CM_248 prokMSA_id:31362 Tenacibaculum sp. clone MERTZ_0CM_42 prokMSA_id:37069 Tenacibaculum ovolyticus strain:IAM14318 prokMSA_id:92931 Flavobacteriaceae G121102s1_3 2.15.1.3.13.136 OTU 1 seq prokMSA_id:45309 Marine ATAM173a_6 2.15.1.3.13.137 OTU 1 seq prokMSA_id:59803 clone BB2_231 2.15.1.3.13.138 OTU 1 seq prokMSA_id:59806 clone BB2_71 2.15.1.3.13.139 OTU 1 seq prokMSA_id:29027 CFB group MERTZ_0CM_403 2.15.1.3.13.140 OTU 1 seq prokMSA_id:78926 Flexibacter sp. 2216.15.5 2.15.1.3.13.141 OTU 1 seq prokMSA_id:85064 Bacteroidetes KMM 3949 2.15.1.3.13.142 OTU 1 seq prokMSA_id:81144 Bacteroidetes ANT9105 2.15.1.3.13.143 OTU 1 seq prokMSA_id:80944 Arctic sea ice ARK10223 2.15.1.3.13.144 OTU 1 seq prokMSA_id:20776 Bacteroidetes clone BIvi22 2.15.1.3.13.145 OTU 1 seq prokMSA_id:96608 Robiginitalea biformata strain HTCC2514 2.15.1.3.13.146 OTU 1 seq prokMSA_id:67189 Cellulophaga sp. MM#3 2.15.1.3.13.147 OTU 2 seqs prokMSA_id:39004 Arenibacter latericius KMM 426T prokMSA_id:84611 Arenibacter sp. KMM 3941 AY271622 2.15.1.3.13.148 OTU 2 seqs prokMSA_id:2401 Cytophaga fucicola str. NN015860 strain prokMSA_id:31829 Cellulophaga lytica strain ACEM21 2.15.1.3.13.149 OTU 8 seqs prokMSA_id:17681 clone KS27 prokMSA_id:24477 clone KS1 prokMSA_id:26719 SIC.B8012 prokMSA_id:40211 CFB group FL13A12 prokMSA_id:49040 clone KS17 prokMSA_id:51877 clone KS16 prokMSA_id:75119 Croceibacter atlanticus strain HTCC2559T prokMSA_id:83353 Marine arctic deep-sea FI7 2.15.1.3.14 PSF.TORQUIS_SUBGROUP 107 seqs 2.15.1.3.14.150 OTU 101 seqs prokMSA_id:2284 Myroides odoratus M58777 prokMSA_id:2285 str. SS2 prokMSA_id:2286 str. SS1 prokMSA_id:2289 Flavobacterium johnsoniae M59053 prokMSA_id:2294 Flavobacterium columnare M58781 prokMSA_id:2296 clone K20-54 prokMSA_id:2297 Flavobacterium BURTON-22 prokMSA_id:2310 Flavobacterium columnare str. IAM 14301. AB010951 prokMSA_id:2311 Flavobacterium columnare str. FK 401. AB010952 prokMSA_id:2312 Flavobacterium columnare str. EK-28 IAM 14820. AB016515 prokMSA_id:2319 Flavobacterium hibernum ATCC 51468 . L39067 prokMSA_id:2321 Flavobacterium sp. str. IC001. U85889 prokMSA_id:2323 Cytophaga sp. str. 0092 prokMSA_id:2325 Flavobacterium columnare str. PH-97028 IAM 14821 prokMSA_id:2330 Flexibacter aurantiacus str. Lewin DWO ATCC 23107 . M62792 prokMSA_id:2334 Flavobacterium johnsoniae M59051 prokMSA_id:17527 Flavobacterium omnivorum As1.2747 prokMSA_id:20785 Flavobacterium sp. Sun4 prokMSA_id:22147 clone PDS7 prokMSA_id:22740 clone CR99-7-06 prokMSA_id:25756 clone CR99-2-14 prokMSA_id:27830 Acanthamoeba sp. KHLA1 AF366582 prokMSA_id:28957 Bacteroidetes clone BIui38 prokMSA_id:29190 Cytophaga sp. arc18 prokMSA_id:29605 clone CR98-5-18 prokMSA_id:30411 Flavobacterium xinjiangensis AS1.2749 prokMSA_id:30501 Cytophagales clone PRD01b007B prokMSA_id:30567 clone CRD99-32 prokMSA_id:31025 clone CR98-5-14 prokMSA_id:32260 clone CR99-24-43 prokMSA_id:34165 Flavobacterium sp. ST-92 prokMSA_id:35795 CFB group clone:TYM--16 AB077353 prokMSA_id:36301 clone CR99-7-66 prokMSA_id:36697 Flavobacterium sp. ST-10 prokMSA_id:37557 clone CRD99-49 prokMSA_id:39169 CFB group A1002 prokMSA_id:41560 Flavobacterium aff. xylanivorum A1/C-aer/OIV prokMSA_id:43899 Bacteroidetes clone BIhii40 prokMSA_id:44287 Flavobacterium xinjiangensis As1.2748 prokMSA_id:46708 clone PDS7 prokMSA_id:48020 CFB group MERTZ_0CM_293 prokMSA_id:48501 Cytophaga sp. P1 prokMSA_id:49742 clone CR99-2-41 prokMSA_id:52347 Flavobacterium sp. ST-82 prokMSA_id:58543 Flavobacterium gelidilacus strain LMG 21477 prokMSA_id:58544 Flavobacterium gelidilacus strain LMG 21619 prokMSA_id:58629 Flavobacterium psychrophilum strain:IFO 15942 prokMSA_id:58640 Flavobacterium columnare strain:IFO 15943 AB078047 prokMSA_id:58641 Flexibacter aurantiacus subsp. excathedrus strain:IFO 16024 prokMSA_id:58643 Flavobacterium johnsoniae strain:IFO 15970 AB078043 prokMSA_id:59129 clone P-1R prokMSA_id:66512 clone cvf63053 prokMSA_id:68626 clone KRA30+03 prokMSA_id:71577 Cytophagales clone PRD01b005B AF289165 prokMSA_id:73504 CS112 AY124338 prokMSA_id:73974 Flavobacterium hibernum L39067 prokMSA_id:74897 clone:TCR14 prokMSA_id:75018 clone:TCRS7 AB075140 prokMSA_id:75069 clone:TSR3 AB075183 prokMSA_id:75084 clone:TCR12 AB075161 prokMSA_id:75225 clone:TCR3 prokMSA_id:75294 clone:TCRS5 AB075138 prokMSA_id:75341 clone:TCR11 AB075160 prokMSA_id:75427 clone:TSR9 AB075189 prokMSA_id:75511 clone:TCR7 AB075156 prokMSA_id:76012 clone:TCR17 prokMSA_id:76039 clone:TCRS15 prokMSA_id:76148 clone:TSRS7 prokMSA_id:76211 clone:TCR16 prokMSA_id:76295 clone:TSR4 AB075184 prokMSA_id:76842 clone:TSR6 prokMSA_id:77209 clone:TCR2 prokMSA_id:77258 clone:TCRS9 AB075142 prokMSA_id:77276 Earthworm gut ED5 prokMSA_id:79763 Arctic sea ice ARK10104 prokMSA_id:80159 Arctic sea ice ARK10287 AF468434 prokMSA_id:80173 Arctic sea ice associated ARK10272 prokMSA_id:80488 Arctic sea ice ARK10161 prokMSA_id:80779 Arctic sea ice ARK10270 prokMSA_id:80970 Arctic sea ice ARK10159 prokMSA_id:81617 Bacteroidetes ARK10264 prokMSA_id:82700 Antarctic R-9033 strain R-9033 prokMSA_id:83757 Antarctic R-8022 strain R-8022 prokMSA_id:84396 Antarctic R-7933 strain R-7933 AJ440987 prokMSA_id:84445 Antarctic R-9122 strain R-9122 prokMSA_id:85147 Antarctic R-7550 strain R-7550 prokMSA_id:85662 Flavobacteria clone TLM12 prokMSA_id:86223 Bacteroidetes clone CF39 AY274854 prokMSA_id:87141 Flavobacterium degerlachei strain LMG 21915 prokMSA_id:87289 Flavobacterium frigoris strain LMG 21922 prokMSA_id:88003 Flavobacterium micromati strain LMG 21919 prokMSA_id:88681 Flavobacterium sp. clone P80-1 prokMSA_id:89871 Bacteroidetes clone MBMPE34 prokMSA_id:91181 G21 AY345400 prokMSA_id:91330 clone W4A-G04 AY345505 prokMSA_id:93577 Cytophaga sp. An11 isolate An11 prokMSA_id:93705 Cytophaga sp. An36 isolate An36 prokMSA_id:95461 Flavobacterium psychrolimnae strain LMG 22018 prokMSA_id:95581 Flavobacterium xanthum 16SrRNA strain R-9010 prokMSA_id:95849 Flavobacterium frigoris 16SrRNA strain R-7518 AJ601393 prokMSA_id:96230 Flavobacterium psychrolimnae strain LMG 22020 2.15.1.3.14.151 OTU 2 seqs prokMSA_id:2419 Psychroflexus torquis str. 651 ACAM 623 prokMSA_id:18627 strain R7695 2.15.1.3.14.152 OTU 1 seq prokMSA_id:48628 CFB group kpc113rc 2.15.1.3.14.153 OTU 1 seq prokMSA_id:44430 CFB group clone MERTZ_0CM_94 2.15.1.3.14.154 OTU 1 seq prokMSA_id:61975 Flavobacterium sp. V4.MO.31 2.15.1.3.14.155 OTU 1 seq prokMSA_id:61980 Flavobacterium sp. V4.BO.21 2.15.1.3.15 PSH.BURTONENSIS_SUBGROUP 31 seqs 2.15.1.3.15.156 OTU 17 seqs prokMSA_id:2438 Psychroserpens burtonensis ACAM 188 prokMSA_id:2443 Gelidibacter algens str. C8ST5 ACAM 536. U62914 prokMSA_id:2444 Gelidibacter algens str. A296 ACAM 551 prokMSA_id:2448 Psychroserpens BURTON-3 prokMSA_id:2464 Cytophaga sp. str. JTB244 prokMSA_id:17502 Gelidibacter algens ACAM 550 U62915 prokMSA_id:18364 Cytophagales Arctic97A-13 prokMSA_id:27314 Gelidibacter McMurdo.124 prokMSA_id:45624 Psychroserpens SIC.42372 prokMSA_id:46048 Marine SCRIPPS_413 prokMSA_id:46124 CFB group MERTZ_0CM_363 prokMSA_id:49506 Marine MBIC1357 strain:MBIC1357 prokMSA_id:83782 Pseudocytophaga algae KMM 3557 AY228461 prokMSA_id:84329 Antarctic R-9217 strain R-9217 prokMSA_id:87495 Flavobacteriaceae G11A1 prokMSA_id:92350 Bacteroidetes clone PLY-P1-33 prokMSA_id:95118 clone A29 complete 2.15.1.3.15.157 OTU 3 seqs prokMSA_id:22467 CS_B047 prokMSA_id:61189 clone UC1 prokMSA_id:94749 Entomoplasmatales clone 61 AJ515719 2.15.1.3.15.158 OTU 1 seq prokMSA_id:2460 clone BURTON-32 2.15.1.3.15.159 OTU 3 seqs prokMSA_id:1894 Cytophaga fermentans M58766 prokMSA_id:70361 Flavobacterium sp. V4.ME.09 marine isolate AJ244696 prokMSA_id:80764 Arctic sea ice associated ARK10007 2.15.1.3.15.160 OTU 1 seq prokMSA_id:81005 Arctic sea ice ARK10217 2.15.1.3.15.161 OTU 1 seq prokMSA_id:81008 Arctic sea ice associated ARK10144 2.15.1.3.15.162 OTU 1 seq prokMSA_id:91580 K2-15 2.15.1.3.15.163 OTU 1 seq prokMSA_id:84711 Bacteroidetes clone CF30 2.15.1.3.15.164 OTU 1 seq prokMSA_id:86326 Bacteroidetes clone CF4 2.15.1.3.15.165 OTU 1 seq prokMSA_id:80530 Arctic sea ice ARK10267 2.15.1.3.15.166 OTU 1 seq prokMSA_id:84921 Bacteroidetes clone CF77 2.15.1.3.16 ENVIRONMENTAL_CLONE_FL7_SUBGROUP 39 seqs 2.15.1.3.16.167 OTU 38 seqs prokMSA_id:2342 Polaribacter irgensii str. 23-P ATCC 49675. M61002 prokMSA_id:2354 Polaribacter BURTON-11 prokMSA_id:2355 Polaribacter IC063 str. IC063. U85885 prokMSA_id:2357 Polaribacter filamentus str. 215. U73726 prokMSA_id:2358 Flexibacter maritimus str. R2 ATCC 43398 . M64629 prokMSA_id:2359 Cytophaga sp. str. JTB143 prokMSA_id:2411 Flavobacterium salegens DSM 5424 . M92279 prokMSA_id:2472 clone BURTON-18 prokMSA_id:19974 CFB group MERTZ_0CM_53 prokMSA_id:22560 CFB group MERTZ_2CM_320 prokMSA_id:28929 Polaribacter Arctic96B-11 AF354621 prokMSA_id:42044 CFB group MERTZ_2CM_22 prokMSA_id:43476 Polaribacter Arctic97A-15 prokMSA_id:44604 marine ZD0255 prokMSA_id:45474 Polaribacter SIC.127 prokMSA_id:48158 CFB group MERTZ_2CM_184 prokMSA_id:51701 Cytophagales Arctic96B-24 prokMSA_id:58630 Tenacibaculum maritimum strain:IFO 15946 prokMSA_id:59812 clone BB2_75 prokMSA_id:66475 clone cvf63045 prokMSA_id:66542 clone cvf116075 prokMSA_id:79136 Bacteroidetes KMM 3938 prokMSA_id:79935 Arctic sea ice associated ARK10121 prokMSA_id:80091 Arctic sea ice ARK10048 prokMSA_id:80621 Arctic sea ice ARK10105 prokMSA_id:80722 Arctic sea ice ARK10004 AF468406 prokMSA_id:80782 Arctic sea ice ARK10129 prokMSA_id:81099 Polaribacter irgensii strain ANT9044 prokMSA_id:81527 Psychroflexus torquis strain ANT9268 prokMSA_id:81957 Polaribacter irgensii strain ANT9210 AY167317 prokMSA_id:84331 Cellulophaga sp. E26 prokMSA_id:84632 Bacteroidetes clone CF57 AY274857 prokMSA_id:88955 Flavobacteriaceae Gaa02_04net2_3 prokMSA_id:92812 Bacteroidetes clone PLY-P2-67 AY354793 prokMSA_id:92953 Bacteroidetes clone PLY-P2-57 prokMSA_id:92963 Bacteroidetes clone PLY-P2-101 prokMSA_id:95259 clone D108 prokMSA_id:97808 clone CS399 2.15.1.3.16.168 OTU 1 seq prokMSA_id:86177 Bacteroidetes clone CF6 2.15.1.4 CYTOPHAGA_GROUP_II 5 seqs 2.15.1.4.169 OTU 1 seq prokMSA_id:2471 clone BURTON-31 2.15.1.4.170 OTU 2 seqs prokMSA_id:79316 clone ZA2515c prokMSA_id:92827 Bacteroidetes clone PLY-P1-118 2.15.1.4.171 OTU 1 seq prokMSA_id:52704 AA26 2.15.1.4.172 OTU 1 seq prokMSA_id:59793 clone BB2_87 2.15.2 SPHINGOBACTERIUM_GROUP 30 seqs 2.15.2.173 OTU 8 seqs prokMSA_id:2490 Sphingobacterium thalpophilum M58779 prokMSA_id:2491 Sphingobacterium multivorum str. OM-A8 prokMSA_id:26308 Sphingobacterium thalpophilum strain DSM 11723T AJ438177 prokMSA_id:44075 Bacteroidetes clone BIji46 prokMSA_id:63191 Sphingobacterium sp. p11E prokMSA_id:77995 Sphingobacterium sp. TUT1026 prokMSA_id:79272 Sphingobacterium multivorum AB100738 prokMSA_id:79519 Sphingobacterium multivorum 2.15.2.174 OTU 2 seqs prokMSA_id:2494 Flavobacterium mizutaii M58796 prokMSA_id:46477 Flavobacterium mizutaii strain DSM 11724T 2.15.2.176 OTU 13 seqs prokMSA_id:2484 Sphingobacterium OM-E81 str. OM-E81 prokMSA_id:18213 clone Car56rb prokMSA_id:29206 Pedobacter piscium strain DSM 11725T prokMSA_id:39088 Pedobacter cryoconitis strain DSM 14825T prokMSA_id:40607 Pedobacter africanus strain DSM 12126T prokMSA_id:43819 Bacteroidetes clone BIsi29 prokMSA_id:59539 CAGY10 strain CAGY10 AF538748 prokMSA_id:75758 clone:TSRS13 AB075181 prokMSA_id:76495 clone:KCRS10 AB075066 prokMSA_id:77080 clone:KCRS8 prokMSA_id:86257 Bacteroidetes W-2003a parital AB107167 prokMSA_id:91480 Bacteroidetes EC2 prokMSA_id:95052 Pedobacter sp. HHS22 strain HHS22 2.15.2.177 OTU 1 seq prokMSA_id:66465 clone cvf116080 2.15.2.178 OTU 1 seq prokMSA_id:22691 Sphingobacterium faecium strain DSM 11690T 2.15.2.179 OTU 1 seq prokMSA_id:97995 Bacteroidetes clone SW30 2.15.2.180 OTU 1 seq prokMSA_id:52839 Pedobacter heparinus strain DSM 2366T 2.15.2.181 OTU 2 seqs prokMSA_id:2503 Sphingobacterium spiritivorum M58778 prokMSA_id:66760 Sphingobacterium spiritivorum strain DSM 2582 2.15.2.182 OTU 1 seq prokMSA_id:56235 Flexibacter canadensis strain:IFO 15130 2.15.4 LEWINELLA_GROUP 43 seqs 2.15.4.2 FLX.SANCTI_SUBGROUP 39 seqs 2.15.4.2.183 OTU 1 seq prokMSA_id:58633 Flexibacter japonensis strain:IFO 16041 2.15.4.2.184 OTU 1 seq prokMSA_id:66507 clone cvf61048 2.15.4.2.185 OTU 4 seqs prokMSA_id:40474 clone CR99-24-05 AF429115 prokMSA_id:79195 clone ZA2626c AF382107 prokMSA_id:81165 clone KD3-83 prokMSA_id:81785 clone KD2-78 2.15.4.2.186 OTU 16 seqs prokMSA_id:17872 marine ZD0203 prokMSA_id:26459 Bacteroidetes clone BIti15 prokMSA_id:37253 marine ZD0403 prokMSA_id:45113 ECS45 prokMSA_id:62953 clone LPU78 prokMSA_id:66517 clone cvf70155 prokMSA_id:80980 Arctic sea ice ARK10063 prokMSA_id:81377 clone KD3-6 prokMSA_id:81414 clone KD3-117 prokMSA_id:81764 Bacteroidetes clone VC10 prokMSA_id:81804 clone KD9-156 prokMSA_id:81938 clone KD3-128 prokMSA_id:82316 clone KD9-169 prokMSA_id:83660 Bacteroidetes clone CF60 prokMSA_id:90706 soil clone Dpcom60 prokMSA_id:92712 Bacteroidetes clone PLY-P3-1 2.15.4.2.187 OTU 3 seqs prokMSA_id:2512 Flavobacterium ferrugineum ATCC 13524 . M62798 prokMSA_id:23290 clone CRP99-69 prokMSA_id:93279 CFB group clone KCM-C-67 2.15.4.2.188 OTU 3 seqs prokMSA_id:27977 ECS44 prokMSA_id:47936 Flavobacterium-like sp. oral clone AZ105 prokMSA_id:79594 clone ZA3907c AF382130 2.15.4.2.189 OTU 3 seqs prokMSA_id:42738 Flexibacter sp. clone:TSL-25 prokMSA_id:92169 Bacteroidetes clone PLY-P1-89 AY354780 prokMSA_id:92532 Bacteroidetes clone PLY-P1-27 2.15.4.2.190 OTU 1 seq prokMSA_id:49350 clone CRP99-58 2.15.4.2.191 OTU 7 seqs prokMSA_id:2521 Chitinophaga pinensis ACM 2034 . AF078775 prokMSA_id:2525 Flexibacter sancti ATCC 23092 . M62795 prokMSA_id:41596 Chitinophaga sp. 1105 prokMSA_id:58620 Flexibacter sancti strain:IFO 16033 prokMSA_id:58622 Flexibacter sancti strain:IFO 15057 prokMSA_id:58639 Flexibacter filiformis strain:IFO 15056 prokMSA_id:71851 Flexibacter cf. sancti AF181568 2.15.4.3 LEW.NIGRICANS_SUBGROUP 4 seqs 2.15.4.3.192 OTU 1 seq prokMSA_id:63062 Saprospira grandis 2.15.4.3.193 OTU 1 seq prokMSA_id:999994 SYN Sap.grandi 2.15.4.3.194 OTU 2 seqs prokMSA_id:2533 Haliscomenobacter hydrossis M58790 prokMSA_id:22670 clone CR98-5-24 2.15.6 CY.AURANTIACA_GROUP 30 seqs 2.15.6.195 OTU 1 seq prokMSA_id:91207 clone GLBR-3 2.15.6.196 OTU 2 seqs prokMSA_id:2617 IFAM 3359 prokMSA_id:2619 IFAM 3359. X90706 2.15.6.197 OTU 14 seqs prokMSA_id:2613 IFAM 1493 prokMSA_id:2614 IFAM 2074 prokMSA_id:2615 IFAM 3211 prokMSA_id:2616 IFAM 3215. X90703 prokMSA_id:2618 IFAM 3359. X90705 prokMSA_id:21292 Cytophagales clone 26 AF361199 prokMSA_id:26447 CFB group clone SM1E06 prokMSA_id:46730 Cytophagales clone 13 prokMSA_id:47912 clone CR99-35-69 prokMSA_id:53372 clone CR99-2-46 prokMSA_id:87893 Bacteroidetes clone FL08H07 prokMSA_id:89802 Bellia baltica strain BA1 prokMSA_id:90126 Bellia baltica strain BA134 T prokMSA_id:91944 clone W4A-D01 2.15.6.198 OTU 2 seqs prokMSA_id:2582 Cytophaga hutchinsonii str. D465 P.H.A. Sneath ATCC 33406 . prokMSA_id:94866 Cytophaga hutchinsonii Chut_22 whole genome shotgun 2.15.6.199 OTU 4 seqs prokMSA_id:2594 Runella slithyformis ATCC 29530 . M62786 prokMSA_id:29165 Unknown organism 0411 prokMSA_id:31714 sp. sbr-gs16 prokMSA_id:40157 glc13 2.15.6.200 OTU 2 seqs prokMSA_id:2579 Microscilla marina str. SIO-8 ATCC 23134 . M58793 prokMSA_id:58608 Microscilla marina strain:IFO 16560 2.15.6.201 OTU 2 seqs prokMSA_id:2600 Microscilla furvescens str. TV-2 ATCC 23129. M58792 prokMSA_id:58609 Microscilla furvescens strain:IFO 15994 2.15.6.202 OTU 1 seq prokMSA_id:2601 clone BURTON-24 2.15.6.203 OTU 2 seqs prokMSA_id:2599 Flexibacter ruber str. Lewin GEY ATCC 23103 . M58788 prokMSA_id:58624 Flexibacter ruber strain:IFO 16677 2.15.7 FLX.LITORALIS_GROUP 2 seqs 2.15.7.204 OTU 2 seqs prokMSA_id:2625 Flexibacter roseolus str. Lewin CR-155 ATCC 23088 . M58787 prokMSA_id:58625 Flexibacter roseolus strain:IFO 16707 2.15.8 TMN.LAPSUM_GROUP 1 seq 2.15.8.205 OTU 1 seq prokMSA_id:2626 Thermonema lapsum ATCC 43542 2.16 GREEN_SULFUR_BACTERIA 2 seqs 2.16.3 CHLOROBIUM_GROUP 2 seqs 2.16.3.206 OTU 2 seqs prokMSA_id:2685 Chlorobium tepidum str. NZC. M58468 prokMSA_id:64302 Chlorobium tepidum TLS section 14 of 194 of the complete gen 2.18 ENVIRONMENTAL_CLONE_WCHB1-31_GROUP 10 seqs 2.18.207 OTU 2 seqs prokMSA_id:66949 clone SHA-2 AJ306740 prokMSA_id:81161 clone ZZ14AC19 2.18.208 OTU 1 seq prokMSA_id:67537 sludge A30 2.18.209 OTU 1 seq prokMSA_id:2724 clone SJA-170 2.18.210 OTU 1 seq prokMSA_id:83926 clone CCD21 2.18.211 OTU 1 seq prokMSA_id:23344 green nonsulfur MERTZ_21CM_337 2.18.212 OTU 2 seqs prokMSA_id:19494 clone GIF1 prokMSA_id:70228 a2b046 AF419665 2.18.213 OTU 1 seq prokMSA_id:84512 Anaerobic filamentous KIBI-1 2.18.214 OTU 1 seq prokMSA_id:2743 clone WCHA1-69 2.20 PLANCTOMYCES_AND_RELATIVES 101 seqs 2.20.1 PIRELLULA_GROUP 7 seqs 2.20.1.2 PIR.STALEYI_SUBGROUP 7 seqs 2.20.1.2.215 OTU 3 seqs prokMSA_id:2808 Pirellula marina DSM 3645 prokMSA_id:2811 str. 116 prokMSA_id:2817 Pirellula marina ATCC 49069 . NONE 2.20.1.2.216 OTU 4 seqs prokMSA_id:2825 Pirellula staleyi DSM 6068 . X81946 prokMSA_id:2826 Pirellula staleyi ATCC 27377. M34126 prokMSA_id:2828 Pirellula staleyi DSM 6068 . AJ231183 prokMSA_id:35238 Pirellula staleyi strain ATCC 35122 2.20.6 CHLAMYDOPHILA_SUBDIVISION 94 seqs 2.20.6.2 CHLAMYDOPHILA_GROUP 94 seqs 2.20.6.2.3 CHLAMYDOPHILA_SUBGROUP 94 seqs 2.20.6.2.3.217 OTU 1 seq prokMSA_id:2951 Chlamydophila Chlamyophila cf. pneumoniae CPXT1 str. CPXT1 2.20.6.2.3.218 OTU 1 seq prokMSA_id:2952 Chlamydophila pneumoniae str. N16 2.20.6.2.3.219 OTU 17 seqs prokMSA_id:2954 Chlamydia trachomatis str. 434 prokMSA_id:2955 Chlamydia trachomatis str. L2/434/BU ATCC VR-902B prokMSA_id:2956 Chlamydia trachomatis str. E/UW-5/Cx prokMSA_id:3009 Chlamydia trachomatis str. HAR-13 prokMSA_id:3010 Chlamydia trachomatis str. A.SA-1.OT prokMSA_id:3011 Chlamydia trachomatis str. B/TW-5/OT prokMSA_id:3012 Chlamydia trachomatis str. C/TW-3/OT prokMSA_id:3013 Chlamydia trachomatis str. D/TW-3/CX prokMSA_id:3014 Chlamydia trachomatis str. D/UW-3/CX prokMSA_id:3015 Chlamydia trachomatis str. D/UW-3/CX prokMSA_id:3020 Chlamydia trachomatis str. A/Har-13 prokMSA_id:3024 Chlamydia suis str. S45 prokMSA_id:3025 Chlamydia suis str. R22 prokMSA_id:49665 Chlamydia trachomatis A/Har-13T prokMSA_id:50790 Chlamydia trachomatis complete genome prokMSA_id:52481 Chlamydia trachomatis complete genome prokMSA_id:72345 Chlamydia suis strain S45 complete ; and 23S 2.20.6.2.3.220 OTU 11 seqs prokMSA_id:3027 Chlamydophila pecorum str. Bo/E58 prokMSA_id:3030 Chlamydia pecorum str. Bo/Shizuoka prokMSA_id:3031 Chlamydia pecorum str. Bo/Maeda prokMSA_id:3032 Chlamydophila pecorum str. Ov/IPA ATCC VR629 prokMSA_id:3033 Chlamydia pecorum str. Koala II prokMSA_id:3034 Chlamydia pecorum str. Bo-1485 prokMSA_id:3035 Chlamydia pecorum str. Bo-Maeda prokMSA_id:3036 Chlamydia pecorum str. Bo-Yokohama prokMSA_id:3037 Chlamydia pecorum str. SPV789 prokMSA_id:3040 str. IPAIowa polyarthritis ATCC VR-629 prokMSA_id:36991 Chlamydia pecorum Bo/Maeda 2.20.6.2.3.221 OTU 1 seq prokMSA_id:27186 alpha GR-371.III.105 2.20.6.2.3.222 OTU 63 seqs prokMSA_id:2937 Chlamydophila felis str. Fe/Pn-1 ATCC VR120 prokMSA_id:2938 Chlamydophila felis str. Fe/145 prokMSA_id:2939 Chlamydophila felis str. Fe/B166 prokMSA_id:2940 Chlamydophila felis str. Fe/C164 prokMSA_id:2941 Chlamydophila felis str. Fe/C454 prokMSA_id:2942 Chlamydophila felis str. Fe/Cello prokMSA_id:2943 Chlamydophila felis str. Fe/C429 prokMSA_id:2944 Chlamydophila felis str. Fe-145 prokMSA_id:2946 Chlamydophila psittaci prokMSA_id:2959 Chlamydophila abortus str. Ov/B577 ATCC VR-656 prokMSA_id:2960 Chlamydia psittaci str. Prk/Daruma prokMSA_id:2961 Chlamydia psittaci str. Prk46 prokMSA_id:2962 Chlamydia psittaci str. Prk48 prokMSA_id:2963 Chlamydia psittaci str. Prk49 prokMSA_id:2964 Chlamydophila psittaci str. 6BC ATCC VR-125 prokMSA_id:2966 Chlamydia psittaci str. Bud-1 prokMSA_id:2967 Chlamydia psittaci str. Bud-11F from a budgerigar prokMSA_id:2968 Chlamydia psittaci str. Bud-16F from a budgerigar prokMSA_id:2969 Chlamydia psittaci str. Bud-5695 from a budgerigar prokMSA_id:2970 Chlamydia psittaci str. Cal-10 ATCC VR-122 prokMSA_id:2971 Chlamydia psittaci str. GCP-1 prokMSA_id:2972 Chlamydia psittaci str. Itoh prokMSA_id:2973 Chlamydia psittaci str. Izawa-1 from a budgerigar prokMSA_id:2974 Chlamydia psittaci str. Koala prokMSA_id:2975 Chlamydia psittaci str. Mizuno-1F from a budgerigar prokMSA_id:2976 Chlamydia psittaci str. Ohmiya prokMSA_id:2977 Chlamydia psittaci str. P1015 from a feral pigeon prokMSA_id:2978 Chlamydia psittaci str. P1041 from a feral pigeon prokMSA_id:2979 Chlamydia psittaci str. P1305 from a feral pigeon prokMSA_id:2980 Chlamydia psittaci str. P1307 from a feral pigeon prokMSA_id:2981 Chlamydia psittaci str. P1313 from a feral pigeon prokMSA_id:2982 Chlamydia psittaci str. P1315 from a feral pigeon prokMSA_id:2983 Chlamydia psittaci str. P1321 from a feral pigeon prokMSA_id:2984 Chlamydia psittaci str. P1605 from a feral pigeon prokMSA_id:2985 Chlamydia psittaci str. P1646 from a feral pigeon prokMSA_id:2986 Chlamydia psittaci str. P1888 from a feral pigeon prokMSA_id:2988 Chlamydophila psittaci PCM 131 prokMSA_id:2989 Chlamydia psittaci PCM 27 prokMSA_id:2990 Chlamydia psittaci PCM 30 prokMSA_id:2991 Chlamydia psittaci PCM 44 prokMSA_id:2992 Chlamydia psittaci PCM 55 prokMSA_id:2993 Chlamydia psittaci PCM 9 prokMSA_id:2994 Chlamydia psittaci str. Sugimoto-F from a cockatiel prokMSA_id:2995 Chlamydia psittaci str. Sugawara from a budgerigar prokMSA_id:2997 Chlamydia psittaci str. T4 prokMSA_id:2998 Chlamydia psittaci str. Tk-Cal prokMSA_id:3000 Chlamydophila psittaci str. 6BC ATCC VR-125 prokMSA_id:3001 Chlamydophila psittaci prokMSA_id:3002 Chlamydophila caviae str. Gp/Ic; GPIC ATCC VR813 prokMSA_id:3004 str. GPIC ATCC VR-813 prokMSA_id:3005 Chlamydophila felis str. strain VR-120 ATCC VR-120 prokMSA_id:3016 Chlamydophila psittaci str. 6BC ATCC VR-125 prokMSA_id:3017 Chlamydia psittaci str. Frt-Hu/Ca110 prokMSA_id:3018 Chlamydia psittaci str. Prt/GCP-1 prokMSA_id:3021 Chlamydophila abortus str. B577 ATCC VR-656 prokMSA_id:3022 Chlamydophila abortus str. EBA prokMSA_id:20912 Chlamydia psittaci Fe/Pn-1 prokMSA_id:25134 Chlamydia psittaci Gp/Ic prokMSA_id:36508 Chlamydia psittaci Prk/Daruma prokMSA_id:44021 Chlamydia psittaci Prt/GCP1 prokMSA_id:70709 Chlamydophila psittaci strain 6BC and 23S operon complete prokMSA_id:83486 Chlamydophila caviae GPIC complete genome prokMSA_id:85110 Chlamydophila caviae GPIC section 4 of 4 of the complete gen 2.21 CYANOBACTERIA_AND_CHLOROPLASTS 372 seqs 2.21.1 CYANOBACTERIA 214 seqs 2.21.1.1 OSCILLATORIA_GROUP 36 seqs 2.21.1.1.223 OTU 4 seqs prokMSA_id:3052 Trichodesmium erythraeum prokMSA_id:3054 Trichodesmium contortum. AF013028 prokMSA_id:3055 Trichodesmium thiebautii. AF013027 prokMSA_id:59107 Trichodesmium havanum str. F34-5 AF518770 2.21.1.1.224 OTU 1 seq prokMSA_id:58491 Lyngbya hieronymusii var. hieronymusii strain: CN4-3 2.21.1.1.225 OTU 11 seqs prokMSA_id:3062 Arthrospira sp. PCC 7345. X75044 prokMSA_id:3288 "Oscillatoria neglecta" str. M-82 prokMSA_id:34894 Leptolyngbya PCC7104 AB039012 prokMSA_id:38561 Oscillatoria sp. AJ133106 prokMSA_id:49980 Arthrospira maxima prokMSA_id:55271 Arthrospira sp. OUQDS6 complete ; tRNA-Ile and tRNA-Ala gene prokMSA_id:69038 Arthrospira sp. FACHB438 complete ; tRNA-Ile and tRNA-Ala ge prokMSA_id:69039 Arthrospira sp. FACHB439 complete ; tRNA-Ile and tRNA-Ala ge prokMSA_id:71484 Arthrospira sp. genes tRNA-Ile tRNA-Ala 23S X75044 prokMSA_id:80667 Spirulina platensis prokMSA_id:91721 clone K2-S-25 AY344430 2.21.1.1.226 OTU 3 seqs prokMSA_id:3053 Trichodesmium tenue prokMSA_id:47726 Oscillatoria sancta prokMSA_id:74791 Oscillatoria sancta 2.21.1.1.227 OTU 2 seqs prokMSA_id:26990 Oscillatoria acuminata prokMSA_id:89126 Dpcom98 2.21.1.1.228 OTU 7 seqs prokMSA_id:56232 Planktothricoides raciborskii strain: T1-6-2 prokMSA_id:58434 Planktothricoides raciborskii strain: NSLA4 prokMSA_id:58435 Planktothricoides raciborskii strain: OR1-1 prokMSA_id:58436 Planktothricoides raciborskii strain: NSLA3 prokMSA_id:58439 Planktothricoides raciborskii strain: NIES 207 prokMSA_id:58445 Planktothricoides raciborskii strain: INBaOR prokMSA_id:82269 Phormidium sp. ETS-05 isolate ETS-05 2.21.1.1.229 OTU 7 seqs prokMSA_id:3060 Synechococcus ATCC700243 str. C1 ATCC 700243 prokMSA_id:40063 Synechococcus PCC6716 prokMSA_id:54965 Synechococcus PCC6717 prokMSA_id:81500 cyanobacterium JapanCy10 prokMSA_id:82001 cyanobacterium JapanCy10 prokMSA_id:82105 cyanobacterium JapanCy10 prokMSA_id:82454 cyanobacterium JapanCy11 2.21.1.1.230 OTU 1 seq prokMSA_id:36764 cyanobacterium clone SM2C12 2.21.1.2 NOSTOC_GROUP 37 seqs 2.21.1.2.232 OTU 3 seqs prokMSA_id:3106 Nostoc ATCC53789 ATCC 53789 prokMSA_id:63340 Nostoc commune strain:M-13 prokMSA_id:83183 Nostoc commune country:Japan:Ishikawa Kanazawa Asano River 2.21.1.2.233 OTU 1 seq prokMSA_id:43551 Anabaena planctonica strain 71 2.21.1.2.234 OTU 20 seqs prokMSA_id:3091 Nodularia BCNOD9427 str. BCNOD9427 prokMSA_id:3208 Xenococcus PCC7305 PCC 7305 prokMSA_id:19362 Nodularia sp. strain PCC7804 prokMSA_id:20056 Nodularia harveyana strain PCC7804 prokMSA_id:20340 Nodularia sp. PCC 9350 prokMSA_id:24739 Nodularia harveyana strain UTEX-B2093 prokMSA_id:24971 Nodularia spumigena strain NSOR12 prokMSA_id:29506 Cyanospira rippkae prokMSA_id:32123 Nodularia spumigena strain NSGL02A10 prokMSA_id:34133 Nodularia spumigena strain NSOR10 prokMSA_id:36477 Anabaena bergii prokMSA_id:37800 Nodularia spumigena strain L575 prokMSA_id:40979 Nodularia spumigena strain NSOR04 prokMSA_id:44512 Nodularia spumigena strain NSPH02 prokMSA_id:46957 Nodularia spumigena strain UTEX-B2092 prokMSA_id:52046 Nodularia spumigena strain HEM prokMSA_id:70323 Nodularia spumigena strain BY1 AF268004 prokMSA_id:71066 Nodularia sp. strain BY1 AJ133177 prokMSA_id:71521 Nodularia sp. strain GR8b AJ133178 prokMSA_id:71803 Nodularia sp. strain NSOR-12 AJ133180 2.21.1.2.235 OTU 13 seqs prokMSA_id:3092 Nostoc muscorum PCC 7120 prokMSA_id:3095 "Anabaena variabilis" IAM M-3 prokMSA_id:29130 Anabaena variabilis NIES23 prokMSA_id:44376 Nostoc sp. PCC 7120 complete genome section 7/19 prokMSA_id:46727 Nostoc sp. PCC 7120 complete genome section 15/19 prokMSA_id:52227 Nostoc sp. PCC 7120 complete genome section 18/19 prokMSA_id:53088 Nostoc sp. PCC 7120 complete genome section 8/19 prokMSA_id:53707 Nostoc sp. PCC 7120 complete genome prokMSA_id:79820 Anabaena variabilis prokMSA_id:80820 Calothrix brevissima prokMSA_id:80843 Nostoc linckia prokMSA_id:82934 Nostoc entophytum IAM M-267 prokMSA_id:83776 Tolypothrix sp. IAM M-259 2.21.1.3 GLOEOTHECE-GLOEOCAPSA_GROUP 24 seqs 2.21.1.3.236 OTU 5 seqs prokMSA_id:35028 Cyanothece sp. PCC 8801 prokMSA_id:67712 Cyanothece sp. SKTU126 genes Ile-tRNA 23S and complete prokMSA_id:67714 Gloeothece sp. KO68DGA genes Ile-tRNA 23S and complete prokMSA_id:67719 Gloeothece sp. KO11DG genes r Ile-tRNA 23S and complete prokMSA_id:67720 Gloeothece sp. SK40 genes Ile-tRNA 23S and complete 2.21.1.3.237 OTU 10 seqs prokMSA_id:16864 cyanobacterium prokMSA_id:24335 Pleurocapsa PCC7319 prokMSA_id:26117 cyanobacterium 128-56 prokMSA_id:36128 cyanobacterium clone CD5F5 prokMSA_id:39837 cyanobacterium clone CD4A5 AY038547 prokMSA_id:42503 cyanobacterium clone CD1B7 AY037873 prokMSA_id:46080 Stanieria PCC7301 prokMSA_id:66484 clone cvf61044 prokMSA_id:80524 Xenococcus sp. PCC 7307 prokMSA_id:80822 Pleurocapsa sp. PCC 7314 2.21.1.3.238 OTU 4 seqs prokMSA_id:3248 str. MPI 96N303 prokMSA_id:3249 str. MPI 96N304 prokMSA_id:3301 Prochlorothrix hollandica prokMSA_id:3302 clone LD16. AJ007866 2.21.1.3.239 OTU 1 seq prokMSA_id:49254 Pleurocapsa PCC7327 2.21.1.3.240 OTU 3 seqs prokMSA_id:3240 Gloeothece membranacea prokMSA_id:28876 Stanieria cyanosphaera prokMSA_id:48280 Stanieria cyanosphaera 2.21.1.3.241 OTU 1 seq prokMSA_id:25314 cyanobacterium clone SM1D04 2.21.1.4 LEPTOLYNGBYA_GROUP 14 seqs 2.21.1.4.242 OTU 2 seqs prokMSA_id:3292 clone QSSC9L-4 prokMSA_id:57549 Acaryochloris marina strain MBIC 11017 2.21.1.4.243 OTU 4 seqs prokMSA_id:3265 Leptolyngbya sp. str. VRUC 135 Albertano 1985/1. X84809 prokMSA_id:3274 unnamed organism. AF076159 prokMSA_id:29805 Phormidium autumnale prokMSA_id:81275 cyanobacterium JapanCy08 2.21.1.4.244 OTU 2 seqs prokMSA_id:94351 Antarctic cyanobacterium clone Fr094 complete prokMSA_id:94503 Antarctic cyanobacterium clone Fr239 complete 2.21.1.4.245 OTU 1 seq prokMSA_id:40082 Synechococcus PCC7902 2.21.1.4.247 OTU 5 seqs prokMSA_id:31912 Fischerella muscicola prokMSA_id:60570 clone B95 prokMSA_id:60602 clone G01 prokMSA_id:82530 Fischerella major NIES 592 prokMSA_id:83042 Fischerella sp. IAM M-263 2.21.1.6 PHORMIDIUM_GROUP 2 seqs 2.21.1.6.248 OTU 1 seq prokMSA_id:3293 "Plectonema F3" str. F3 2.21.1.6.249 OTU 1 seq prokMSA_id:52706 Leptolyngbya PCC7375 2.21.1.8 MICROCYSTIS_GROUP 2 seqs 2.21.1.8.250 OTU 1 seq prokMSA_id:3299 Synechococcus sp. PCC 6301 2.21.1.8.251 OTU 1 seq prokMSA_id:17697 Planktothrix sp. FP1 2.21.1.9 PRC.MARINUS_GROUP 99 seqs 2.21.1.9.252 OTU 75 seqs prokMSA_id:3338 Synechococcus WH8101 str. WH8101 prokMSA_id:16960 clone CRP99-52 prokMSA_id:21599 cyanobacterium DCM-FREE-7 prokMSA_id:22911 Synechococcus PCC9005 prokMSA_id:23065 Synechococcus NAC1-5 prokMSA_id:28869 Cyanobacterium 5X15 prokMSA_id:29395 cyanobacterium clone CD2D9 AY038580 prokMSA_id:30258 clone CR98-24-58 prokMSA_id:30851 Synechococcus sp. PS721 prokMSA_id:31761 clone CRP99-70 prokMSA_id:33530 Synechococcus sp. WH 8018 prokMSA_id:33656 Synechococcus sp. PS723 prokMSA_id:34370 clone CR99-24-62 prokMSA_id:34642 clone CR98-24-74 prokMSA_id:45601 Synechococcus sp. PS717 prokMSA_id:46371 clone CRP99-33 prokMSA_id:53206 Synechococcus sp. LBB3 ; internal transcribed spacer 1 compl prokMSA_id:54179 Synechococcus sp. MIT S9220 ; internal transcribed spacer co prokMSA_id:54544 Synechococcus sp. WH 8020 ; internal transcribed spacer comp prokMSA_id:54601 Synechococcus sp. LBG2 ; internal transcribed spacer 1 compl prokMSA_id:58392 Synechococcus sp. MB11A04 ; tRNA-Ile and tRNA-Ala genes comp prokMSA_id:58393 Synechococcus sp. MB11E09 ; tRNA-Ile and tRNA-Ala genes comp prokMSA_id:59293 Synechococcus sp. WH 8012 prokMSA_id:62935 Synechococcus sp. UBR prokMSA_id:62939 Synechococcus sp. 1002 prokMSA_id:70431 Synechococcus sp. MLS1228cl3 AF400152 prokMSA_id:81048 Synechococcus sp. clone A715009 prokMSA_id:81108 Synechococcus sp. clone A315001 prokMSA_id:81268 Synechococcus sp. clone A315006 prokMSA_id:81277 Synechococcus sp. clone A715016 prokMSA_id:81379 Synechococcus sp. clone A715001 prokMSA_id:81393 Synechococcus sp. clone A315003 prokMSA_id:81413 Synechococcus sp. clone A715015 prokMSA_id:81449 Synechococcus sp. clone A715003 prokMSA_id:81563 Synechococcus sp. clone A315007 prokMSA_id:81631 Synechococcus sp. clone A715005 prokMSA_id:81638 Synechococcus sp. clone A315025 prokMSA_id:81662 Synechococcus sp. clone A315023 prokMSA_id:81715 Synechococcus sp. clone A715004 prokMSA_id:81769 Synechococcus sp. clone A715013 prokMSA_id:81859 Synechococcus sp. clone A715006 prokMSA_id:81872 Synechococcus sp. clone A715012 prokMSA_id:81898 Synechococcus sp. clone A315010 prokMSA_id:82121 Synechococcus sp. clone A715011 prokMSA_id:82146 Synechococcus sp. clone A315004 prokMSA_id:82220 Synechococcus sp. clone A715014 prokMSA_id:82249 Synechococcus sp. clone A315011 prokMSA_id:82268 Synechococcus sp. clone A715002 prokMSA_id:82280 Synechococcus sp. clone A315008 prokMSA_id:82376 Synechococcus sp. clone A315020 prokMSA_id:82398 Synechococcus sp. clone A315026 prokMSA_id:82763 Synechococcus sp. CC9311 prokMSA_id:83014 Synechococcus sp. RS9904 prokMSA_id:83222 Synechococcus sp. RS9902 prokMSA_id:83391 Synechococcus sp. WH 8016 prokMSA_id:83422 Synechococcus sp. WH 8002 prokMSA_id:83438 Synechococcus sp. RS9910 prokMSA_id:83566 Synechococcus sp. RS9907 prokMSA_id:84053 Synechococcus sp. Oli31 prokMSA_id:84712 Synechococcus sp. CC9605 prokMSA_id:84801 Synechococcus sp. RS9919 prokMSA_id:84810 Synechococcus sp. RS9909 prokMSA_id:85143 Synechococcus sp. RS9911 prokMSA_id:85276 Synechococcus sp. WH 8109 prokMSA_id:85406 Synechococcus sp. RS9920 prokMSA_id:85509 Synechococcus sp. RS9901 prokMSA_id:85670 Synechococcus sp. RS9914 prokMSA_id:85806 Synechococcus sp. RS9912 prokMSA_id:85960 Synechococcus sp. Eum14 prokMSA_id:85989 Synechococcus sp. RS9916 prokMSA_id:86023 Synechococcus sp. RS9906 prokMSA_id:86155 Synechococcus sp. RS9903 prokMSA_id:86621 Synechococcus sp. RS9908 prokMSA_id:91747 clone K2-30-3 AY344431 prokMSA_id:91791 clone L2-50 AY344432 2.21.1.9.253 OTU 2 seqs prokMSA_id:23052 cyanobacterium clone CD3E9 prokMSA_id:37989 Synechococcus PCC7009 2.21.1.9.254 OTU 22 seqs prokMSA_id:3346 Synechococcus sp. PCC 7001 prokMSA_id:3347 Prochlorococcus MIT9303 str. MIT9303 prokMSA_id:3348 Prochlorococcus MIT9313 str. MIT9313 prokMSA_id:3353 Prochlorococcus MIT9211 str. MIT9211. AF115270 prokMSA_id:27195 clone CR99-24-15 prokMSA_id:32068 cyanobacterium clone CD2G1 prokMSA_id:53164 Prochlorococcus marinus str. SS2 ; internal transcribed spac prokMSA_id:53658 Prochlorococcus marinus str. SS51 ; internal transcribed spa prokMSA_id:53820 Prochlorococcus marinus str. MIT 9303 ; internal transcribed prokMSA_id:54408 Prochlorococcus marinus str. MIT 9313 ; internal transcribed prokMSA_id:54893 Prochlorococcus marinus str. LG ; internal transcribed space prokMSA_id:62931 Synechococcus sp. TAGS prokMSA_id:62934 Synechococcus sp. HOS prokMSA_id:62937 Synechococcus sp. T7cc1 prokMSA_id:72701 Prochlorococcus marinus str. SS35 ; internal transcribed spa prokMSA_id:79350 clone ZA3703c prokMSA_id:83400 Synechococcus sp. MH305 AY224198 prokMSA_id:88136 Prochlorococcus marinus subsp. marinus str. CCMP1375 complet prokMSA_id:89557 Prochlorococcus marinus subsp. marinus str. CCMP1375 section prokMSA_id:92726 Prochlorococcus marinus str. MIT 9313 complete genome prokMSA_id:93043 Prochlorococcus marinus MIT9313 complete genome; segment 6/7 prokMSA_id:93066 Prochlorococcus marinus MIT9313 complete genome; segment 1/7 2.21.2 CHLOROPLASTS_AND_CYANELLES 153 seqs 2.21.2.3 OTHER_CHLOROPLASTS 29 seqs 2.21.2.3.1 SKELETONEMA_SUBGROUP 4 seqs 2.21.2.3.1.255 OTU 1 seq prokMSA_id:66548 clone cvf74026 2.21.2.3.1.256 OTU 1 seq prokMSA_id:3402 marine snow associated clone agg56 2.21.2.3.1.257 OTU 1 seq prokMSA_id:3447 Olisthodiscus luteus stramenopile -- chloroplast 2.21.2.3.1.258 OTU 1 seq prokMSA_id:3448 Pylaiella littoralis brown alga -- chloroplast 2.21.2.3.2 EUGLENA_SUBGROUP 2 seqs 2.21.2.3.2.259 OTU 1 seq prokMSA_id:3454 Astasia longa str. CCAP 1204-17a colorless euglenophycean al 2.21.2.3.2.260 OTU 1 seq prokMSA_id:3456 Euglena gracilis euglenophycean alga -- chloroplast 2.21.2.3.4 PYRENOMONAS_SUBGROUP 19 seqs 2.21.2.3.4.261 OTU 15 seqs prokMSA_id:3475 Palmaria palmata edible? red alga -- chloroplast prokMSA_id:55962 plastid clone ML1218M-3 prokMSA_id:63795 plastid clone ML513M-21 AF454341 prokMSA_id:63797 plastid clone ML512M-4 prokMSA_id:63799 plastid clone ML512M-11 prokMSA_id:63802 plastid clone ML512M-1 prokMSA_id:63804 plastid clone ML320J-7 prokMSA_id:63805 plastid clone ML320J-27 prokMSA_id:63807 plastid clone ML316M-3 prokMSA_id:63812 plastid clone ML310M-1a prokMSA_id:63816 plastid clone ML1218M-26 prokMSA_id:63817 plastid clone ML1218M-24 prokMSA_id:63818 plastid clone ML310M-37 prokMSA_id:63819 plastid clone ML1218M-21 prokMSA_id:63822 plastid clone ML110M-7 2.21.2.3.4.262 OTU 2 seqs prokMSA_id:60252 Proteomonas sulcata plastid prokMSA_id:60255 Chroomonas placoidea plastid 2.21.2.3.4.263 OTU 1 seq prokMSA_id:29775 Compsopogon coeruleus ; plastid plastid product 2.21.2.3.4.264 OTU 1 seq prokMSA_id:3470 Pyrenomonas salina cryptomonad -- chloroplast 2.21.2.3.5 PORPHYRA_SUBGROUP 1 seq 2.21.2.3.5.265 OTU 1 seq prokMSA_id:3473 Antithamnion sp. red alga -- chloroplast 2.21.2.3.6 CYANIDIUM_SUBGROUP 3 seqs 2.21.2.3.6.266 OTU 3 seqs prokMSA_id:3479 Cyanidium caldarium str. 14-1-1 red alga -- chloroplast prokMSA_id:18692 rhodophyte clone CY4 ; plastid plastid product prokMSA_id:51285 Cyanidium caldarium ; plastid plastid product 2.21.2.4 GREEN_ALGAE_CHLOROPLASTS 7 seqs 2.21.2.4.267 OTU 3 seqs prokMSA_id:3484 Chlamydomonas reinhardtii green alga -- chloroplast. J01395 prokMSA_id:3486 Yamagishiella unicocca str. X-441 green alga -- chloroplast prokMSA_id:79762 TPA: Chlamydomonas reinhardtii chloroplast complete genome 2.21.2.4.268 OTU 2 seqs prokMSA_id:3494 Chlorella mirabilis str. 748-I green alga -- chloroplast. X6 prokMSA_id:51270 clone CRP99-67 2.21.2.4.269 OTU 1 seq prokMSA_id:3482 Chlorella ellipsoidea str. IAM-C87 green alga -- chloroplast 2.21.2.4.270 OTU 1 seq prokMSA_id:3490 Nanochlorum eucaryotum green coccoidal alga -- chloroplast 2.21.2.5 CHAROPHYTA-EMBRYOPHYTA_CHLOROPLASTS 117 seqs 2.21.2.5.271 OTU 1 seq prokMSA_id:3521 Alnus incana hazel alder -- chloroplast 2.21.2.5.272 OTU 8 seqs prokMSA_id:3535 Botrychium biternatum eusporangiate fern -- chloroplast prokMSA_id:3539 Brassica napus forage rape; kale -- chloroplast prokMSA_id:3549 Ophioglossum engelmannii eusporangiate fern -- chloroplast prokMSA_id:42014 Calypogeia muelleriana ; chloroplast chloroplast product prokMSA_id:53867 Lotus japonicus chloroplast complete genome prokMSA_id:59840 Lotus japonicus chloroplast complete genome prokMSA_id:69692 Arabidopsis thaliana chloroplast genomic complete strain:Col prokMSA_id:73572 Arabidopsis thaliana chloroplast complete genome 2.21.2.5.273 OTU 5 seqs prokMSA_id:3517 Sphagnum palustre bryophyte -- chloroplast prokMSA_id:3525 Tmesipteris oblanceolata fern allies -- chloroplast prokMSA_id:3527 Equisetum arvense fern allies -- chloroplast prokMSA_id:3540 Chara sp. stonewort green alga -- chloroplast. X75519 prokMSA_id:40521 Polytrichum commune ; chloroplast chloroplast product 2.21.2.5.274 OTU 77 seqs prokMSA_id:3113 Microcystis aeruginosa prokMSA_id:3114 Microcystis aeruginosa str. NIES87 prokMSA_id:3119 Microcystis aeruginosa prokMSA_id:3130 Microcystis viridis str. TAC17 prokMSA_id:3131 Microcystis viridis str. TAC78 prokMSA_id:3132 Microcystis aeruginosa str. TAC71 prokMSA_id:3133 Microcystis wesenbergii str. TAC38 prokMSA_id:3134 Microcystis novacekii str. TAC20 prokMSA_id:3135 Microcystis viridis str. NIES102 prokMSA_id:3162 Microcystis sp. str. KND9506 prokMSA_id:3163 Microcystis sp. str. P.R.China prokMSA_id:3164 Microcystis sp. str. P.R.China prokMSA_id:3165 Microcystis sp. str. Thailand prokMSA_id:3166 Microcystis sp. str. Thailand prokMSA_id:3167 Microcystis aeruginosa str. TAC86 prokMSA_id:3168 Microcystis wesenbergii str. TAC52 prokMSA_id:3169 Microcystis novacekii str. TAC65 prokMSA_id:3170 Microcystis ichthyoblabe str. TAC48 prokMSA_id:3171 Microcystis aeruginosa str. TAC170 prokMSA_id:3177 Microcystis ichthyoblabe prokMSA_id:3235 Microcystis wesenbergii prokMSA_id:3236 Microcystis aeruginosa str. NIES98 prokMSA_id:3237 Microcystis wesenbergii str. NIES111 prokMSA_id:3481 Chlorella kessleri str. 211-11g green alga -- chloroplast. X prokMSA_id:3488 Chlorella kessleri str. 211-11h green alga -- chloroplast. D prokMSA_id:3511 Cibotium glaucum Hawaiian tree fern -- chloroplast prokMSA_id:16345 Microcystis aeruginosa strain UWOCC C4 prokMSA_id:16837 Microcystis sp. 'UWOCC BauldE' strain UWOCC BauldE prokMSA_id:17617 Microcystis aeruginosa strain UWOCC M4 prokMSA_id:17755 Microcystis aeruginosa strain UWOCC MR-B prokMSA_id:18186 Microcystis sp. 'UWOCC Q' prokMSA_id:18594 Microcystis aeruginosa strain UWOCC AubB1 prokMSA_id:18622 Microcystis aeruginosa strain UWOCC RID-1 prokMSA_id:19980 Microcystis flos-aquae strain UWOCC C2 prokMSA_id:21664 Microcystis aeruginosa strain UWOCC Bauld5A prokMSA_id:24627 Microcystis aeruginosa strain UWOCC S-15-b prokMSA_id:25608 Microcystis ichthyoblabe prokMSA_id:26154 Microcystis sp. strain 269 prokMSA_id:26766 Microcystis aeruginosa strain UWOCC AK-1 prokMSA_id:27566 Microcystis sp. 'UWOCC K' prokMSA_id:27606 Microcystis aeruginosa prokMSA_id:27662 Microcystis aeruginosa strain UWOCC P3 prokMSA_id:28391 Microcystis wesenbergii prokMSA_id:28651 Microcystis aeruginosa strain UWOCC C1 prokMSA_id:29068 Microcystis novacekii prokMSA_id:29230 Microcystis aeruginosa strain UWOCC E7 prokMSA_id:29257 Microcystis aeruginosa strain UWOCC MR-C prokMSA_id:34405 clone CR98-35-75 prokMSA_id:34524 Microcystis aeruginosa strain UWOCC C5 prokMSA_id:35129 Microcystis flos-aquae strain UWOCC C3 prokMSA_id:35467 Microcystis aeruginosa strain UWOCC 84/1 prokMSA_id:37777 Microcystis sp. strain GL280641 prokMSA_id:37828 Microcystis aeruginosa strain UWOCC AKGV- prokMSA_id:38719 Microcystis sp. 'UWOCC MSU28-1' prokMSA_id:39102 Microcystis aeruginosa strain UWOCC 017 prokMSA_id:39573 Microcystis aeruginosa strain PCC 7820 prokMSA_id:39760 Microcystis sp. 'UWOCC F' strain UWOCC F prokMSA_id:40291 Microcystis flos-aquae strain UWOCC N prokMSA_id:40536 Microcystis aeruginosa strain UWOCC MR-A prokMSA_id:40548 Microcystis aeruginosa strain UWOCC 006 prokMSA_id:40647 Microcystis aeruginosa strain UWOCC MR-B prokMSA_id:41065 Microcystis aeruginosa strain UWOCC MSU28-2 prokMSA_id:42696 Microcystis sp. strain NIES104 prokMSA_id:43227 Microcystis sp. strain 199 prokMSA_id:43518 Microcystis sp. 'UWOCC BauldB' prokMSA_id:45553 Microcystis viridis prokMSA_id:47759 Microcystis aeruginosa strain PCC 7806 prokMSA_id:48796 Microcystis aeruginosa strain UWOCC 019 prokMSA_id:49423 Microcystis aeruginosa strain UWOCC 024 prokMSA_id:49574 Microcystis sp. 'UWOCC CBS' strain UWOCC CBS prokMSA_id:50935 Microcystis aeruginosa strain UWOCC 023 prokMSA_id:51805 Microcystis aeruginosa strain UWOCC MR-D prokMSA_id:52503 Microcystis aeruginosa strain UWOCC 001 prokMSA_id:52726 Microcystis aeruginosa strain UWOCC 026 prokMSA_id:68680 Microcystis aeruginosa prokMSA_id:70007 Microcystis sp. strain 130 AJ133170 prokMSA_id:71439 Chlorella kessleri strain 211-11h chloroplast D11346 2.21.2.5.275 OTU 2 seqs prokMSA_id:3528 Adriana glabrata euphorbialal dicotyledon plant -- chloropla prokMSA_id:53526 Orobanche minor chloroplast trnVGAC trnIGAU pseudogene trnAU 2.21.2.5.276 OTU 1 seq prokMSA_id:84627 Lycopersicon esculentum tRNA-Val complete ; complete ; and t 2.21.2.5.277 OTU 1 seq prokMSA_id:41462 Phaeoceros laevis ; chloroplast chloroplast product 2.21.2.5.278 OTU 1 seq prokMSA_id:3506 Angiopteris evecta eusporangiate fern -- chloroplast 2.21.2.5.279 OTU 1 seq prokMSA_id:3526 Lycopodium digitatum fern allies -- chloroplast 2.21.2.5.280 OTU 1 seq prokMSA_id:3550 Lygodium japonicum leptosporangiate fern -- chloroplast 2.21.2.5.281 OTU 1 seq prokMSA_id:3552 Ricinis communis castor bean -- chloroplast 2.21.2.5.282 OTU 1 seq prokMSA_id:3554 Osmunda cinnamomea str. var. fokiensis cinnamon fern -- 2.21.2.5.283 OTU 4 seqs prokMSA_id:3504 Pisum sativum str. cr. Progress No.9 pea; garden pea -- prokMSA_id:3529 Pisum sativum pea; garden pea -- chloroplast prokMSA_id:33995 P.sativum chloroplast of the single operon prokMSA_id:35330 Cuscuta europaea chloroplast 2.21.2.5.284 OTU 7 seqs prokMSA_id:3559 Cuscuta reflexa dodder plant -- chloroplast prokMSA_id:48948 Ginkgo biloba ; chloroplast chloroplast product prokMSA_id:74351 Cuscuta reflexa chloroplast tRNA-ValGAC and prokMSA_id:88688 Calycanthus fertilis var. ferax chloroplast complete genome prokMSA_id:90638 Calycanthus fertilis var. ferax complete chloroplast genome prokMSA_id:93515 Amborella trichopoda chloroplast genomic complete prokMSA_id:94074 Amborella trichopoda chloroplast complete genome 2.21.2.5.285 OTU 1 seq prokMSA_id:23728 Pellia neesiana ; chloroplast chloroplast product 2.21.2.5.286 OTU 3 seqs prokMSA_id:3515 Glycine max soy bean -- chloroplast prokMSA_id:3541 Glycine max str. Maple arrow soy bean -- chloroplast prokMSA_id:39969 Cycas revoluta ; chloroplast chloroplast product 2.21.2.5.287 OTU 1 seq prokMSA_id:3544 Conopholis americana flowering plant -- chloroplast 2.21.2.5.288 OTU 1 seq prokMSA_id:3546 Daucus carota carrot -- chloroplast 2.21.4 GLOEOBACTER_GROUP 5 seqs 2.21.4.289 OTU 5 seqs prokMSA_id:3563 Gloeobacter violaceus PCC 7421. NONE prokMSA_id:3564 Gloeobacter violaceus PCC 7421. AF132790 prokMSA_id:3565 Gloeobacter PCC8105 PCC 8105 prokMSA_id:94836 Gloeobacter violaceus PCC 7421 complete genome section 6/16 prokMSA_id:97840 Gloeobacter violaceus complete genome 2.25 FIBROBACTER_AND_ACIDOBACTERIUM 4 seqs 2.25.3 ACIDOBACTERIUM_SUBDIVISION 4 seqs 2.25.3.6 ACBT.CAPSULATUM_GROUP 4 seqs 2.25.3.6.290 OTU 2 seqs prokMSA_id:3704 Acidobacterium capsulatum str. 161. D26171 prokMSA_id:73903 Acidobacterium capsulatum Acidophilic chemoorganotrophic 2.25.3.6.291 OTU 2 seqs prokMSA_id:46444 KF/GS-JG36-31 prokMSA_id:93694 Acidobacteria clone JG36-GS-132 2.27 SPIROCHETES_AND_RELATIVES 82 seqs 2.27.1 BRACHYSPIRA_GROUP 4 seqs 2.27.1.292 OTU 1 seq prokMSA_id:3777 Brachyspira aalborgi NCTC 11492 2.27.1.293 OTU 2 seqs prokMSA_id:30878 adhucomuHca76 prokMSA_id:77935 Brachyspira ibaraki strain:HIS24/11/99 2.27.1.294 OTU 1 seq prokMSA_id:37832 adhucomuHca61 2.27.3 SPIROCHAETA-TREPONEMA-BORRELIA_SUBDIVISION 67 seqs 2.27.3.1 SPI.HALOPHILA_GROUP 5 seqs 2.27.3.1.295 OTU 2 seqs prokMSA_id:3820 Spirochaeta sp. str. Antarctic DSM 6211. M87055 prokMSA_id:3821 clone BURTON-26 2.27.3.1.296 OTU 1 seq prokMSA_id:47761 Spirochaeta sp. MERTZ_2CM_106 2.27.3.1.297 OTU 1 seq prokMSA_id:79121 Cytophaga sp. BHI80-3 strain BHI80-3 2.27.3.1.298 OTU 1 seq prokMSA_id:39709 spirochete MT6 2.27.3.2 TREPONEMA_GROUP 29 seqs 2.27.3.2.1 TRP.BRYANTII_SUBGROUP 6 seqs 2.27.3.2.1.299 OTU 4 seqs prokMSA_id:3829 Treponema bryantii str. RUS-1 ATCC 33254 . M57737 prokMSA_id:3830 clone RC1 prokMSA_id:3831 clone RF13 prokMSA_id:3833 clone RFN95 2.27.3.2.1.300 OTU 2 seqs prokMSA_id:3823 Treponema pectinovorum ATCC 33768 . M71237 prokMSA_id:42877 Treponema pectinovorum OMZ831 2.27.3.2.2 TRP.SOCRANSKII_SUBGROUP 1 seq 2.27.3.2.2.301 OTU 1 seq prokMSA_id:3862 Treponema Treponema clone RFS12 2.27.3.2.3 TRP.PALLIDUM_SUBGROUP 19 seqs 2.27.3.2.3.302 OTU 9 seqs prokMSA_id:3949 str. 2-1498 prokMSA_id:3963 Treponema sp. Y08894 prokMSA_id:57738 Treponema sp. 2-1498 prokMSA_id:57741 Treponema sp. 9-3301 prokMSA_id:57742 Treponema sp. 5B prokMSA_id:57743 Treponema sp. 1A prokMSA_id:57744 Treponema sp. 3A prokMSA_id:57745 Treponema sp. 4A prokMSA_id:88036 Treponema sp. HW-2003 2.27.3.2.3.303 OTU 1 seq prokMSA_id:3898 Treponema denticola ATCC 35405 2.27.3.2.3.304 OTU 1 seq prokMSA_id:86665 Treponema sp. oral clone P2PB_53 P3 2.27.3.2.3.305 OTU 2 seqs prokMSA_id:3907 Treponema II:10:D12 str. II:10:D12. AF023030 prokMSA_id:3910 Treponema II:11:U61 str. II:E:U61 2.27.3.2.3.306 OTU 1 seq prokMSA_id:3912 Treponema II:11:C57 str. II:11:C57 2.27.3.2.3.307 OTU 2 seqs prokMSA_id:3895 Spirochaeta zuelzerae ATCC 19044 . M88725 prokMSA_id:3913 Treponema II:H:D11 str. II:H:D11 2.27.3.2.3.308 OTU 1 seq prokMSA_id:94550 Treponema putidum strain OMZ 844 2.27.3.2.3.309 OTU 1 seq prokMSA_id:92384 Treponema genomosp. P2 clone P2PB_60 2.27.3.2.3.310 OTU 1 seq prokMSA_id:46681 AA14 2.27.3.2.4 SPI.STENOSTREPTA_SUBGROUP 2 seqs 2.27.3.2.4.311 OTU 1 seq prokMSA_id:91461 clone SR_FBR_E2 2.27.3.2.4.312 OTU 1 seq prokMSA_id:3977 Treponema Treponema clone RFS1 2.27.3.2.6 STR.MPSP16_SUBGROUP 1 seq 2.27.3.2.6.313 OTU 1 seq prokMSA_id:36858 spirochete Nc15 2.27.3.5 BORRELIA_GROUP 33 seqs 2.27.3.5.314 OTU 28 seqs prokMSA_id:4155 Borrelia persica str. UESV/340 prokMSA_id:4205 Borrelia duttoni. U28503 prokMSA_id:4221 Borrelia sp. str. FCB-1. L37837 prokMSA_id:4229 Borrelia duttonii str. Ku prokMSA_id:4230 Borrelia duttonii str. Ly prokMSA_id:4231 Borrelia duttonii str. La prokMSA_id:4232 Borrelia duttonii str. Ma prokMSA_id:4234 Borrelia parkeri str. M3001 prokMSA_id:4235 Borrelia turicatae str. M2007 prokMSA_id:4241 Borrelia hermsii str. HS1T ATCC 35209 prokMSA_id:4242 Borrelia crocidurae str. UESV/ACH prokMSA_id:4243 Borrelia crocidurae str. UESV/626BAN prokMSA_id:4244 Borrelia crocidurae str. UESV/917BAR prokMSA_id:4245 Borrelia crocidurae str. UESV/1040DAK 24 prokMSA_id:4246 Borrelia crocidurae str. UESV/1045DAK 33 prokMSA_id:4247 Borrelia crocidurae str. UESV/MER prokMSA_id:4248 Borrelia crocidurae str. UESV/1043DAK 28 prokMSA_id:4249 Borrelia crocidurae str. UESV/523SIS prokMSA_id:4250 Borrelia crocidurae str. UESV/1096TEN prokMSA_id:4251 Borrelia duttonii str. UESV/117DUTT prokMSA_id:4252 Borrelia duttonii str. UR/BD94MIT prokMSA_id:4253 Borrelia duttonii str. UESV/334RWA prokMSA_id:4254 Borrelia hispanica str. UESV/246 prokMSA_id:27842 Borrelia parkeri isolate 6230 complete prokMSA_id:32451 Borrelia parkeri prokMSA_id:33625 Borrelia sp. EFL-S0100110 prokMSA_id:50797 Borrelia parkeri isolate 6232 complete prokMSA_id:79116 Borrelia sp. TXW-1 2.27.3.5.315 OTU 1 seq prokMSA_id:4212 Borrelia valaisiana str. CKA1 2.27.3.5.316 OTU 2 seqs prokMSA_id:4269 Borrelia japonica str. IKA2 prokMSA_id:4298 Borrelia burgdorferi str. CA2 2.27.3.5.317 OTU 1 seq prokMSA_id:79174 Borrelia sp. SCGT-10 2.27.3.5.318 OTU 1 seq prokMSA_id:4182 Borrelia anserina str. ES-1 2.27.4 LEPTOSPIRA_SUBDIVISION 11 seqs 2.27.4.1 LEPTOSPIRA_GROUP 11 seqs 2.27.4.1.1 LPS.INTERROGANS_SUBGROUP 4 seqs 2.27.4.1.1.319 OTU 4 seqs prokMSA_id:4342 Leptospira weilii str. Worsfold isolate WA 52. U12677 prokMSA_id:4351 Leptospira weilii str. Celledoni isolate WA 45 ATCC 43285 . prokMSA_id:4354 Leptospira santarosai str. LT81 isolate SA39. U12672 prokMSA_id:65605 Leptospira weilii strain Ecochallenge 2.27.4.1.2 LPS.BIFLEXA_SUBGROUP 7 seqs 2.27.4.1.2.320 OTU 7 seqs prokMSA_id:4373 Leptospira biflexa subsp. Tororo str. mutant 1/1993 prokMSA_id:4375 Leptospira biflexa subsp. Tororo str. mutant 2/1994 prokMSA_id:4376 Leptospira biflexa subsp. Tororo str. mutant 3/1993 prokMSA_id:4377 Leptospira biflexa subsp. Tororo str. mutant 3/1994 prokMSA_id:4378 Leptospira biflexa subsp. Tororo str. mutant 6/1993 prokMSA_id:4379 Leptospira biflexa subsp. Tororo str. mutant 6/1994 prokMSA_id:4380 Leptospira biflexa str. Tororo parent strain 2.28 PROTEOBACTERIA 4467 seqs 2.28.1 ALPHA_SUBDIVISION 1207 seqs 2.28.1.1 RDV.SALINARUM_GROUP 1 seq 2.28.1.1.321 OTU 1 seq prokMSA_id:95041 clone A56 complete 2.28.1.2 RHODOPILA_GROUP 109 seqs 2.28.1.2.3 RPL.GLOBIFORMIS_SUBGROUP 1 seq 2.28.1.2.3.322 OTU 1 seq prokMSA_id:4410 Rhodopila globiformis str. 7950 DSM 161 2.28.1.2.4 ABA.ACETI_SUBGROUP 78 seqs 2.28.1.2.4.323 OTU 1 seq prokMSA_id:36562 alpha clone SM2C02 2.28.1.2.4.324 OTU 1 seq prokMSA_id:4458 Gluconacetobacter diazotrophicus ATCC 49037 2.28.1.2.4.325 OTU 2 seqs prokMSA_id:4426 Acidomonas methanolica str. MB 58 IMET 10945 prokMSA_id:4470 Acidomonas methanolica str. MB 58 IMET 10945 2.28.1.2.4.326 OTU 71 seqs prokMSA_id:4419 Acetobacter intermedius str. TF2 DSM 11804 . Y14694 prokMSA_id:4421 Acetobacter pomorum str. LTH 2458 DSM 11825 . AJ001632 prokMSA_id:4423 Gluconacetobacter hansenii NCIMB 8746 prokMSA_id:4425 Acetobacter PA2.2 str. PA2.2 prokMSA_id:4429 Gluconacetobacter liquefaciens IFO 12388 prokMSA_id:4430 Gluconacetobacter sacchari str. IF9645. AF127413 prokMSA_id:4431 Gluconacetobacter sacchari str. IF2-6 prokMSA_id:4432 Gluconacetobacter sacchari str. IF9701. AF127411 prokMSA_id:4440 str. SRI1941. AF127400 prokMSA_id:4441 Gluconacetobacter liquefaciens str. SRI1994. AF127395 prokMSA_id:4443 Gluconacetobacter liquefaciens str. SRI1957. AF127393 prokMSA_id:4449 Acetobacter oboediens str. LTH 2460 DSM 11826 . AJ001631 prokMSA_id:4450 Acetobacter intermedius str. ZIM B025 JKD. AJ012697 prokMSA_id:4452 Acetobacter aceti JCM 7641 prokMSA_id:4455 Acetobacter europaeus str. JK2. Y15289 prokMSA_id:4463 Gluconacetobacter xylinus subsp. xylinus NCIMB 11664 prokMSA_id:4465 Gluconacetobacter xylinus subsp. sucrofermentans str. BPR200 prokMSA_id:4466 Acetobacter ITDI2.1 str. ITDI2.1 prokMSA_id:4467 Acetobacter europaeus str. ZIM B028 V3. AJ012698 prokMSA_id:4469 Acetobacter aceti NCIMB 8621 prokMSA_id:18427 Acetobacter indonesiensis strain:LMG 1571 prokMSA_id:21095 Gluconacetobacter entanii strain LTH4560 AJ251110 prokMSA_id:22182 Acetobacter estunensis AB032349 prokMSA_id:22265 Acetobacter roseisyzygii strain:22F-1B prokMSA_id:23292 Acetobacter sp. DOR prokMSA_id:25708 Acetobacter indonesiensis strain:1B-M19D prokMSA_id:27422 Acetobacter tropicalis strain:Y-1BM prokMSA_id:28838 Acetobacter roseisyzygii strain:9H-2 prokMSA_id:29322 Acetobacter cibinongensis strain:4H-1 prokMSA_id:34202 Acetobacter tropicalis strain:NRIC 0312 isolate:No.3 AB03235 prokMSA_id:34622 Acetobacter tropicalis strain:NRIC 0312 isolate:No.39 AB0323 prokMSA_id:36976 Acetobacter azotocaptans prokMSA_id:38754 Acetobacter orientalis strain:B-7SC prokMSA_id:39658 Acetobacter orientalis strain:1B-M18A prokMSA_id:41554 Acetobacter cibinongensis strain:1BM-18C prokMSA_id:48133 Acetobacter roseisyzygii strain:1B-M19C prokMSA_id:48935 Acetobacter orientalis strain:4B-S16D prokMSA_id:51781 Acetobacter orleanensis prokMSA_id:56023 Acetobacter malorum strain LMG 1746 prokMSA_id:56605 Gluconacetobacter sp. LMG 1689 AJ316550 prokMSA_id:58362 Acetobacter orleanensis strain LMG 1583 prokMSA_id:58363 Acetobacter lovaniensis strain LMG 1617 prokMSA_id:58364 Acetobacter tropicalis strain LMG 1663 prokMSA_id:58365 Acetobacter peroxydans strain LMG 1633 prokMSA_id:58366 Acetobacter pomorum strain LMG 18848 prokMSA_id:58367 Acetobacter pasteurianus strain LMG 1629 prokMSA_id:58368 Acetobacter cerevisiae strain LMG 1625 prokMSA_id:58369 Acetobacter indonesiensis strain LMG 1588 prokMSA_id:58371 Acetobacter aceti strain LMG 1531 prokMSA_id:58372 Acetobacter estunensis strain LMG 1572 prokMSA_id:58373 Acetobacter estunensis strain LMG 1626 prokMSA_id:65495 Acetobacter pasteurianus strain:NCI 1193 prokMSA_id:70289 A.xylinum prokMSA_id:71473 A.hansenii prokMSA_id:71559 Gluconacetobacter persimmonensis prokMSA_id:72097 A.liquefaciens prokMSA_id:72244 A.europaeus prokMSA_id:73040 Acetobacter sp. strain LMG 1582 prokMSA_id:73674 A.diazotrophicus prokMSA_id:82919 Gluconacetobacter diazotrophicus clone PAl3 prokMSA_id:83463 Gluconacetobacter diazotrophicus clone UAP-Ac7 prokMSA_id:84352 Gluconacetobacter diazotrophicus clone CFNE-550 prokMSA_id:85095 Gluconacetobacter diazotrophicus clone UAP-Cf51 prokMSA_id:85459 Gluconacetobacter diazotrophicus clone 4-02 prokMSA_id:85491 Gluconacetobacter diazotrophicus clone UAP-Ac10 prokMSA_id:86451 Gluconacetobacter diazotrophicus clone CFN-Cf52 prokMSA_id:92396 Acetobacter pasteurianus isolate:OR56-1 prokMSA_id:92514 Gluconacetobacter liquefaciens isolate:CJ121-1 prokMSA_id:92777 Acetobacter orientalis isolate:SF17-1 AB117966 prokMSA_id:96398 Gluconacetobacter sp. DST GL_02 prokMSA_id:98382 Gluconacetobacter sp. DST GL_01 2.28.1.2.4.327 OTU 1 seq prokMSA_id:4420 Acetobacter sp 2.28.1.2.4.328 OTU 1 seq prokMSA_id:4442 Acetobacter sp. str. SRI1939 2.28.1.2.4.329 OTU 1 seq prokMSA_id:4454 Gluconacetobacter europaeus str. DES11 DSM 6160 2.28.1.2.5 ACDP.CRYPTUM_SUBGROUP 30 seqs 2.28.1.2.5.330 OTU 1 seq prokMSA_id:43037 WD248 clone WD248 2.28.1.2.5.331 OTU 1 seq prokMSA_id:4497 Acidiphilium sp. str. C-1 2.28.1.2.5.332 OTU 7 seqs prokMSA_id:4479 Acidiphilium acidophilum ATCC 27807 prokMSA_id:4480 Acidiphilium angustum ATCC 35903 prokMSA_id:4484 Acidiphilium rubrum ATCC 35905 prokMSA_id:4486 Acidiphilium sp. str. St1-5 prokMSA_id:4487 Acidiphilium sp. str. St1-7 prokMSA_id:40217 Acidiphilium sp. NO-17 prokMSA_id:51452 Acidiphilium sp. NO-13 2.28.1.2.5.333 OTU 7 seqs prokMSA_id:4491 Acidocella aminolytica str. 101 JCM 8796. D30771 prokMSA_id:4492 Acidocella sp. str. GS19h prokMSA_id:22545 Acidocella sp. LGS-3 prokMSA_id:39575 Acidocella sp. NO-12 prokMSA_id:50531 Acidocella sp. WJB-3 prokMSA_id:53994 WD238 clone WD238 prokMSA_id:70861 Acidocella sp. IS10 AF531477 2.28.1.2.5.334 OTU 12 seqs prokMSA_id:4477 Acidiphilium organovorum ATCC 43141 prokMSA_id:4493 Acidiphilium multivorum AIU 301 prokMSA_id:4494 Acidiphilium cryptum DSM 2389. Y18445 prokMSA_id:4495 Acidiphilium multivorum AIU 303 prokMSA_id:4496 Acidiphilium MBIC4287 str. MBIC4287 prokMSA_id:4502 Acidiphilium cryptum ATCC 33463 prokMSA_id:4503 Acidiphilium cryptum str. Kuesel IFV prokMSA_id:4505 Acidiphilium sp. str. GS18h prokMSA_id:28295 Acidiphilium sp. NO-14 prokMSA_id:47077 Acidiphilium sp. SJH prokMSA_id:70949 Acidiphilium sp. MPH2 AF352793 prokMSA_id:72048 Acidiphilium sp. MPH3 AF352794 2.28.1.2.5.335 OTU 2 seqs prokMSA_id:4474 Acidocella facilis str. PW2 ATCC 35904 prokMSA_id:45483 Acidocella sp. D86510 2.28.1.4 AZOSPIRILLUM_GROUP 67 seqs 2.28.1.4.1 R.RUBRUM_SUBGROUP 22 seqs 2.28.1.4.1.336 OTU 21 seqs prokMSA_id:4539 unnamed organism. AF104473 prokMSA_id:4594 Oceanospirillum pusillum IFO 13613 prokMSA_id:4612 Pedomicrobium australicum IFAM ST-1306 prokMSA_id:4615 Pedomicrobium sp. ACM 3067. X97695 prokMSA_id:4617 Pedomicrobium manganicum ACM 3038 . X97691 prokMSA_id:4630 Hyphomicrobium hollandicum IFAM KB-677 . Y14303 prokMSA_id:4632 Hyphomicrobium zavarzinii IFAM ZV-622 prokMSA_id:4636 Hyphomicrobium vulgare str. MC-750 IFAM MC-750 prokMSA_id:4637 Hyphomicrobium zavarzinii str. ZV-580 prokMSA_id:4641 str. US-353. U06473 prokMSA_id:27853 alpha MERTZ_2CM_49 prokMSA_id:27957 Marine SCRIPPS_94 prokMSA_id:32425 alpha MERTZ_0CM_187 prokMSA_id:35557 Thalassospira lucentensis prokMSA_id:43487 alphaproteobacterium 4alphavs17 strain alphavs17 prokMSA_id:52859 sludge A27b prokMSA_id:79281 alpha clone P_wp0211 prokMSA_id:79518 Alpha UMB1A prokMSA_id:80090 Marine B-4 prokMSA_id:85257 Alpha CJ11073 prokMSA_id:97510 clone mv13.4 2.28.1.4.1.338 OTU 1 seq prokMSA_id:4508 Rhodospirillum rubrum str. ATH 1.1.1; S.1 ATCC 11170 2.28.1.4.2 MAG.GRYPHISWALDENSE_SUBGROUP 25 seqs 2.28.1.4.2.339 OTU 4 seqs prokMSA_id:58087 Ellin361 prokMSA_id:58109 Ellin333 prokMSA_id:71781 Ellin331 AF498713 prokMSA_id:93885 alpha clone KCM-B-42 2.28.1.4.2.340 OTU 1 seq prokMSA_id:4526 Magnetospirillum sp. str. MGT-1 2.28.1.4.2.341 OTU 4 seqs prokMSA_id:5800 Rhodobacter blasticus ATCC 33485 . D16429 prokMSA_id:5802 Rhodobacter TCRI 14 str. TCRI 14 prokMSA_id:21409 SA28 prokMSA_id:25169 SA27 2.28.1.4.2.342 OTU 2 seqs prokMSA_id:90230 alpha clone MBMPE49 prokMSA_id:90336 alpha clone MBMPE39 2.28.1.4.2.343 OTU 11 seqs prokMSA_id:4518 Magnetospirillum magnetotacticum. M58171 prokMSA_id:4519 Magnetospirillum magnetotacticum DSM 3856 prokMSA_id:4522 Magnetospirillum sp. str. MSM-6 prokMSA_id:4524 Magnetospirillum magnetotacticum DSM 3856 prokMSA_id:4525 Magnetospirillum sp. str. AMB-1 prokMSA_id:4529 Dechlorospirillum WD str. WD prokMSA_id:4534 Phaeospirillum molischianum ATCC 14031 . M59067 prokMSA_id:4535 Phaeospirillum fulvum str. 1360 NCIMB 11762 . D14433 prokMSA_id:4540 Phaeospirillum fulvum str. 1360 ATCC 15798. M59065 prokMSA_id:35227 Phenol-degrading denitrifying spirillum CC-26 prokMSA_id:68789 Phaeospirillum sp. MPA1 2.28.1.4.2.344 OTU 1 seq prokMSA_id:50004 alpha clone BIfdii21 2.28.1.4.2.345 OTU 1 seq prokMSA_id:47123 alpha kpc47rc 2.28.1.4.2.346 OTU 1 seq prokMSA_id:94247 LS-2 2.28.1.4.4 AZS.LIPOFERUM_SUBGROUP 20 seqs 2.28.1.4.4.347 OTU 1 seq prokMSA_id:63342 Azospirillum sp. Mat2-1a 2.28.1.4.4.348 OTU 1 seq prokMSA_id:32646 alpha MERTZ_2CM_147 2.28.1.4.4.349 OTU 1 seq prokMSA_id:32486 WD278 clone WD278 2.28.1.4.4.350 OTU 1 seq prokMSA_id:32841 Defluvicoccus vanus 2.28.1.4.4.351 OTU 2 seqs prokMSA_id:46989 Alpha OM25 prokMSA_id:72555 alpha CHAB-III-8 5' AJ240913 2.28.1.4.4.352 OTU 3 seqs prokMSA_id:4546 Azospirillum sp. str. ASP-1 prokMSA_id:4549 Azospirillum sp. str. 4 AZ DSM 4834 prokMSA_id:58862 UNSW7 2.28.1.4.4.353 OTU 1 seq prokMSA_id:96386 clone D101 2.28.1.4.4.355 OTU 1 seq prokMSA_id:94484 clone A6 complete 2.28.1.4.4.356 OTU 1 seq prokMSA_id:4575 str. HD-1 2.28.1.4.4.357 OTU 1 seq prokMSA_id:52333 alpha MERTZ_2CM_62 2.28.1.4.4.358 OTU 1 seq prokMSA_id:56633 clone cvf65019 2.28.1.4.4.359 OTU 3 seqs prokMSA_id:25641 sludge A3 prokMSA_id:39310 clone C26-27 prokMSA_id:96049 clone mv13.5 2.28.1.4.4.360 OTU 1 seq prokMSA_id:53437 clone CR98-35-01 2.28.1.4.4.361 OTU 1 seq prokMSA_id:58733 Azospirillum sp. Arm2-2 2.28.1.4.4.362 OTU 1 seq prokMSA_id:4545 Azospirillum irakense str. KBC1 2.28.1.6 RHIZOBIUM-AGROBACTERIUM_GROUP 560 seqs 2.28.1.6.1 STA.STELLULATA_SUBGROUP 13 seqs 2.28.1.6.1.363 OTU 1 seq prokMSA_id:4609 str. HTB015 2.28.1.6.1.364 OTU 1 seq prokMSA_id:20146 ECS12 2.28.1.6.1.365 OTU 11 seqs prokMSA_id:4599 str. MBIC3993 prokMSA_id:4604 Agrobacterium stellulatum IAM 12614. D88520 prokMSA_id:4606 unnamed organism -- macronuclear. Y10914 prokMSA_id:4607 unnamed organism -- macronuclear prokMSA_id:4610 str. MBIC1535 prokMSA_id:35018 Alpha 34619 prokMSA_id:36327 Alpha F0723 prokMSA_id:70630 Unknown marine alpha JP22.1 AY007682 prokMSA_id:88655 Stappia sp. M8 prokMSA_id:91003 K2-26 prokMSA_id:92008 K2-29 2.28.1.6.2 HYP.DENITRIFICANS_SUBGROUP 5 seqs 2.28.1.6.2.366 OTU 2 seqs prokMSA_id:9022 Shewanella benthica str. PT99. AB003189 prokMSA_id:94851 clone A33 2.28.1.6.2.367 OTU 2 seqs prokMSA_id:4616 str. JTB131 prokMSA_id:48953 alpha MERTZ_0CM_183 2.28.1.6.2.368 OTU 1 seq prokMSA_id:90031 Hyphomicrobium sulfonivorans strain 25S complete 2.28.1.6.3 HYP.ZAVARZINII_SUBGROUP 1 seq 2.28.1.6.3.369 OTU 1 seq prokMSA_id:4638 Pedomicrobium fusiforme DSM 5304 2.28.1.6.8 BL.VIRIDIS_ASSEMBLAGE 35 seqs 2.28.1.6.8.370 OTU 2 seqs prokMSA_id:4718 Rhodoplanes Tok2tar1 str. Tok2tar1. AF077729 prokMSA_id:63877 Rhodopseudomonas cryptolactis complete 2.28.1.6.8.371 OTU 1 seq prokMSA_id:4663 Xanthobacter agilis str. SA35 2.28.1.6.8.372 OTU 4 seqs prokMSA_id:4649 Azorhizobium caulinodans str. MAR 1568 ORS 571 . D13948 prokMSA_id:4704 Azorhizobium caulinodans str. MAR 1568 ORS 571 prokMSA_id:4708 Azorhizobium caulinodans str. MAR 1568 ORS 571 prokMSA_id:4730 Azorhizobium caulinodans str. MAR 1568 LMG 6465 2.28.1.6.8.373 OTU 2 seqs prokMSA_id:76548 clone:KSS3 prokMSA_id:93584 alpha clone JG36-GS-46 2.28.1.6.8.374 OTU 5 seqs prokMSA_id:20255 Azorhizobium sp. Br5401 prokMSA_id:36919 ECS14 prokMSA_id:43219 Alpha 76712 prokMSA_id:64286 Alpha LMG 20591 prokMSA_id:90480 Azorhizobium sp. F1 AY301011 2.28.1.6.8.376 OTU 20 seqs prokMSA_id:4654 Xanthobacter autotrophicus str. 7c prokMSA_id:4655 Xanthobacter autotrophicus str. T101 prokMSA_id:4656 Xanthobacter autotrophicus str. T102 prokMSA_id:4658 Xanthobacter autotrophicus str. JW33 prokMSA_id:4661 Thiobacillus novellus IAM 12100. D32247 prokMSA_id:4671 Xanthobacter flavus str. 301 prokMSA_id:4673 Xanthobacter flavus str. H4-14 prokMSA_id:4674 Xanthobacter flavus str. JW/KR-1 prokMSA_id:4675 Xanthobacter flavus str. JW/KR-2 prokMSA_id:4676 Xanthobacter flavus str. JW/KR-E1 prokMSA_id:4700 Xanthobacter tagetidis str. TagT2C prokMSA_id:5066 Rhodobium orientis str. MB312 JCM 9337 prokMSA_id:5200 clone SJA-53. AJ009467 prokMSA_id:5580 Brevundimonas alba str. CB88 DSM 4736 prokMSA_id:22038 Xanthobacter sp. MN 45.1 isolate MN 45.1 prokMSA_id:60723 Monochloroacetic-acid-degrading MCAA1 prokMSA_id:62751 Xanthobacter aminooxidans prokMSA_id:68682 Xanthobacter sp. INA43/2-2 strain INA43/2-2 prokMSA_id:70971 Rhodoplanes elegans prokMSA_id:90457 Xanthobacter sp. COX 2.28.1.6.8.377 OTU 1 seq prokMSA_id:4713 Rhodoplanes elegans str. AS130 2.28.1.6.9 MSI.TRICHOSPORIUM_SUBGROUP 31 seqs 2.28.1.6.9.378 OTU 29 seqs prokMSA_id:4738 Methylocystis parvus prokMSA_id:4741 Methylocystis LW5 str. LW5 prokMSA_id:4748 str. AML-A6 prokMSA_id:4749 str. LR1 prokMSA_id:27344 Methylocystis parvus prokMSA_id:28443 Methylocystis sp. SV97 strain SV97 prokMSA_id:32547 Methylosinus pucelana prokMSA_id:36920 clone LO13.7 prokMSA_id:55280 Methylocystis sp. SC2 strain SC2 prokMSA_id:55990 Methylocystis sp. WRS complete prokMSA_id:56422 Methylocystis echinoides strain IMET 10491 prokMSA_id:64197 Methylocystis parvus strain 57 prokMSA_id:64198 Methylocystis sp. 82 strain 82 prokMSA_id:64199 Methylocystis sp. KS33 strain KS33 prokMSA_id:64204 Methylocystis sp. 39 strain 39 prokMSA_id:64205 Methylocystis sp. 10 strain 10 prokMSA_id:64209 Methylocystis sp. KS12 strain KS12 prokMSA_id:64210 Methylocystis sp. KS8a strain KS8a prokMSA_id:64217 Methylocystis sp. Pi5/4 strain Pi5/4 prokMSA_id:64218 Methylocystis sp. 50/42a strain 50/42a prokMSA_id:64223 Methylocystis parvus strain 81 prokMSA_id:64224 Methylocystis sp. 51 strain 51 prokMSA_id:64227 Methylocystis sp. IMET 10486 strain IMET 10486 prokMSA_id:64230 Methylocystis sp. 495/4 strain 495/4 prokMSA_id:64231 Methylocystis sp. 62/12 strain 62/12 prokMSA_id:68635 II methanotroph CSC-1 prokMSA_id:72367 Methylocystis sp. 50/54 strain 50/54 AJ458510 prokMSA_id:88700 HOClCi42 prokMSA_id:89125 HOClCi39 2.28.1.6.9.379 OTU 1 seq prokMSA_id:64202 Methylocystis sp. F10V2a strain F10V2a 2.28.1.6.9.380 OTU 1 seq prokMSA_id:4737 Methylosinus sporium str. provided by Y.Trotsenko 2.28.1.6.10 BEI.INDICA_SUBGROUP 5 seqs 2.28.1.6.10.381 OTU 1 seq prokMSA_id:27469 clone RB7C5 2.28.1.6.10.382 OTU 3 seqs prokMSA_id:4714 clone WCHB1-55 prokMSA_id:41272 clone CR99-2-43 prokMSA_id:51286 alpha UP2 2.28.1.6.10.383 OTU 1 seq prokMSA_id:4764 clone DA067 2.28.1.6.11 METHYLOBACTERIA_SUBGROUP 28 seqs 2.28.1.6.11.2 MLB.RADIOTOLERANS_SUBGROUP 6 seqs 2.28.1.6.11.2.384 OTU 3 seqs prokMSA_id:24178 Methylobacterium sp. 1722a prokMSA_id:58322 Iron-oxidizing acidophile Y005 prokMSA_id:81189 Methylobacterium fujisawaense 2.28.1.6.11.2.385 OTU 1 seq prokMSA_id:4803 str. MBIC3401 2.28.1.6.11.2.386 OTU 1 seq prokMSA_id:4789 Blastobacter sp. str. PC30.39 2.28.1.6.11.2.387 OTU 1 seq prokMSA_id:4804 Blastobacter sp. str. BF15 2.28.1.6.11.4 BO.THIOOXIDANS_SUBGROUP 22 seqs 2.28.1.6.11.4.388 OTU 2 seqs prokMSA_id:4819 clone SJA-9 prokMSA_id:17833 clone CRP99-59 2.28.1.6.11.4.389 OTU 20 seqs prokMSA_id:4810 Bosea thiooxidans str. BI-42 DSM 9653 . X81044 prokMSA_id:4811 Afipia genosp. 7 str. G8643 prokMSA_id:4812 Afipia genosp. 8 str. G8569 prokMSA_id:4813 Afipia genosp. 9 str. G8994 prokMSA_id:4817 Afipia genosp. 9 str. G8990 prokMSA_id:4822 Bosea thiooxidans str. BI-42 DSM 9653 prokMSA_id:17030 Bosea sp. MN 51a isolate MN 51a prokMSA_id:23471 Alpha A7-2 3'- prokMSA_id:24179 Alpha 34635 prokMSA_id:25399 Alpha 34620 prokMSA_id:27298 Alpha 34649 prokMSA_id:29196 Alpha 34614 prokMSA_id:40437 Alpha A7-2 complete prokMSA_id:47211 Alpha 63287 prokMSA_id:47963 Alpha 63286 prokMSA_id:48650 Bosea mexicana prokMSA_id:50602 Afipia sp. CZ64 isolate CZ64 prokMSA_id:56322 Bosea thiooxidans strain BI-42 prokMSA_id:68714 clone p59 AF484050 prokMSA_id:69677 Bosea sp. 7F 2.28.1.6.12 BRADYRHIZOBIUM_SUBGROUP 108 seqs 2.28.1.6.12.5 RPS.PALUSTRIS_SUBGROUP 68 seqs 2.28.1.6.12.5.390 OTU 4 seqs prokMSA_id:4866 Rhodopseudomonas palustris str. ATH 2.1.6 ATCC 17001 prokMSA_id:58038 Afipia massiliensis prokMSA_id:98099 clone SPCUL1A1 prokMSA_id:98387 clone SPCUL1A2 2.28.1.6.12.5.391 OTU 61 seqs prokMSA_id:4719 Rhodoplanes Wai3R3 str. Wai3R3 prokMSA_id:4721 clone DA122. Y12598 prokMSA_id:4852 Afipia genosp. 5 str. F8014. U87771 prokMSA_id:4854 Rhodopseudomonas palustris. X87279 prokMSA_id:4856 Rhodopseudomonas palustris str. F7-1 prokMSA_id:4859 Rhodopseudomonas palustris prokMSA_id:4860 Afipia genosp. 3 str. G5357 prokMSA_id:4861 Rhodopseudomonas palustris str. No.7 prokMSA_id:4862 Rhodopseudomonas palustris str. No.7 prokMSA_id:4863 Rhodopseudomonas palustris str. No.7 prokMSA_id:4864 Rhodopseudomonas palustris str. ATH 2.1.6 ATCC 17001 prokMSA_id:4937 Bradyrhizobium japonicum str. MAR 1491 USDA 110 prokMSA_id:4938 Bradyrhizobium japonicum IAM 12608 prokMSA_id:4966 Bradyrhizobium japonicum USDA 94 prokMSA_id:4980 Bradyrhizobium japonicum. X87272 prokMSA_id:4990 Bradyrhizobium japonicum prokMSA_id:4995 Bradyrhizobium Mm1-3 str. Mm1-3 prokMSA_id:4996 Bradyrhizobium Pe4 str. Pe4 prokMSA_id:19182 Bradyrhizobium sp. strain Ec3-3 prokMSA_id:20976 clone GIF7 prokMSA_id:22219 WD275 clone WD275 prokMSA_id:23514 Bradyrhizobium sp. strain Rp2-1 prokMSA_id:28377 clone CR98-24-49 prokMSA_id:28497 Rhodopseudomonas sp. B29 prokMSA_id:33185 Bradyrhizobium japonicum strain DASA38025 prokMSA_id:33324 Bradyrhizobium sp. bfs1b prokMSA_id:43234 Bradyrhizobium japonicum strain:NA6545 prokMSA_id:52053 Green Bay ferromanganous micronodule MNF4 prokMSA_id:55721 Bradyrhizobium japonicum strain USDA 122 ; tRNA-Ile and tRNA prokMSA_id:55787 Bradyrhizobium japonicum strain USDA 125 ; tRNA-Ile and tRNA prokMSA_id:56515 Bradyrhizobium japonicum strain USDA 129 ; tRNA-Ile and tRNA prokMSA_id:57508 Bradyrhizobium sp. CCBAU 23046 prokMSA_id:60583 clone B15 prokMSA_id:62337 Rhodopseudomonas sp. HMD88 prokMSA_id:62340 Rhodopseudomonas palustris isolate:VA2-2 prokMSA_id:63879 Rhodoplanes sp. HA17 complete prokMSA_id:64291 Bradyrhizobium sp. ORS 3259 prokMSA_id:67702 Bradyrhizobium japonicum isolate:NA6086 prokMSA_id:67703 Bradyrhizobium japonicum isolate:NA6080 prokMSA_id:67704 Bradyrhizobium japonicum isolate:NA6154 prokMSA_id:67706 Bradyrhizobium japonicum isolate:NA6116 prokMSA_id:68336 Rhodoplanes elegans strain OK5R2b prokMSA_id:68817 Bradyrhizobium japonicum strain USDA 92 ; tRNA-Ile and tRNA- prokMSA_id:68818 Bradyrhizobium japonicum strain USDA 91 ; tRNA-Ile and tRNA- prokMSA_id:69231 Bradyrhizobium sp. STM1470 prokMSA_id:69446 Bradyrhizobium sp. STM1469 prokMSA_id:69495 Bradyrhizobium japonicum strain USDA 62 ; tRNA-Ile and tRNA- prokMSA_id:69802 Bradyrhizobium sp. STM1471 prokMSA_id:74750 Bradyrhizobium japonicum strain USDA 126 ; tRNA-Ile and tRNA prokMSA_id:74891 clone:TSS7 AB075170 prokMSA_id:76302 Bradyrhizobium japonicum complete genome strain: USDA110 sec prokMSA_id:77279 Bradyrhizobium japonicum strain SEMIA 5080 complete prokMSA_id:77282 Bradyrhizobium japonicum strain SEMIA 586 complete prokMSA_id:80752 Bradyrhizobium sp. Cp5-3 prokMSA_id:81923 Bradyrhizobium sp. ORS206 prokMSA_id:87012 Bradyrhizobium sp. NK-3 prokMSA_id:87593 Bradyrhizobium sp. Kus-6 prokMSA_id:87812 Bradyrhizobium sp. Glm-8 prokMSA_id:87872 Bradyrhizobium sp. Leb-14 prokMSA_id:90709 Bradyrhizobium sp. Dr4a.7 prokMSA_id:97561 Alpha Shinshu-th1 2.28.1.6.12.5.392 OTU 2 seqs prokMSA_id:4971 Afipia broomeae str. G5958. U87761 prokMSA_id:21255 Rhodopseudomonas palustris 2.28.1.6.12.5.393 OTU 1 seq prokMSA_id:4851 Rhodopseudomonas palustris str. ATH 2.1.6 ATCC 17001 2.28.1.6.12.8 BDR.LUPINI_SUBGROUP 33 seqs 2.28.1.6.12.8.394 OTU 1 seq prokMSA_id:29213 Bradyrhizobium japonicum strain MSDJ 5605 2.28.1.6.12.8.395 OTU 10 seqs prokMSA_id:4835 Nitrobacter TH21 str. TH21 prokMSA_id:17737 Nitrobacter winogradskyi prokMSA_id:24441 alpha clone BIaii16 prokMSA_id:25095 Nitrobacter sp. PJN1 prokMSA_id:28205 Nitrobacter winogradskyi prokMSA_id:29702 Nitrobacter sp. KB215 prokMSA_id:47296 Nitrobacter sp. NRB5220 prokMSA_id:47708 alpha clone BIvi26 prokMSA_id:56503 Nitrobacter sp. KB212 prokMSA_id:82436 Nitrite-oxidizing MPN2 2.28.1.6.12.8.396 OTU 10 seqs prokMSA_id:4914 Afipia genosp. 4 str. G3644 prokMSA_id:4932 Bradyrhizobium lupini str. FN 13 USDA 3505 prokMSA_id:17111 sludge H4 prokMSA_id:29952 sludge H6 AF234689 prokMSA_id:42466 Bradyrhizobium sp. 1253 prokMSA_id:44246 sludge H29 prokMSA_id:46308 sludge S7 AF234717 prokMSA_id:46815 maize root Zmrc164 prokMSA_id:65618 soil clone S1209 prokMSA_id:83531 clone CCU18 2.28.1.6.12.8.397 OTU 12 seqs prokMSA_id:19767 Bradyrhizobium japonicum strain MSDJ 5317 prokMSA_id:20645 Bradyrhizobium sp. MSDJ 2009 prokMSA_id:20975 Bradyrhizobium japonicum strain MSDJ 5582 prokMSA_id:24680 Bradyrhizobium japonicum strain MSDJ G94 prokMSA_id:25125 Bradyrhizobium sp. MSDJ 5728 prokMSA_id:29036 Bradyrhizobium japonicum strain MSDJ 5586 prokMSA_id:30589 Bradyrhizobium sp. MSDJ 5726 prokMSA_id:36027 Bradyrhizobium japonicum strain MSDJ 5622 prokMSA_id:37915 Bradyrhizobium japonicum strain USDA 123 prokMSA_id:40377 Bradyrhizobium japonicum strain MSDJ 5611 prokMSA_id:50192 Bradyrhizobium sp. MSDJ 5727 prokMSA_id:62985 Bradyrhizobium sp. clone T8-12 rrn 2.28.1.6.12.11 BDR.JAPONICUM8_SUBGROUP 1 seq 2.28.1.6.12.11.398 OTU 1 seq prokMSA_id:74898 clone:TSS6 2.28.1.6.12.14 BLB.DENITRIFICANS_SUBGROUP 6 seqs 2.28.1.6.12.14.399 OTU 6 seqs prokMSA_id:4848 clone pCON11. U27817 prokMSA_id:27860 clone p-5142-2Wb3 prokMSA_id:35423 alpha clone SM2H01 prokMSA_id:62335 Bradyrhizobium sp. IRBG 228 prokMSA_id:62336 Bradyrhizobium sp. IRBG 230 prokMSA_id:62343 Bradyrhizobium sp. BTAi 1 2.28.1.6.15 MSO.HUAKUII_SUBGROUP 173 seqs 2.28.1.6.15.400 OTU 2 seqs prokMSA_id:4808 Methylobacterium MBIC4305 str. MBIC4305 prokMSA_id:86804 Mesorhizobium sp. Put-3 2.28.1.6.15.401 OTU 9 seqs prokMSA_id:5394 clone pCON19 prokMSA_id:31656 alpha clone BIsi40 prokMSA_id:60695 Phyllobacteriaceae NL21 prokMSA_id:77579 Mesorhizobium sp. TUT1018 prokMSA_id:79124 clone csbio160325 prokMSA_id:88552 DSSD80 prokMSA_id:88630 DSSD12 prokMSA_id:90551 DSSD71 prokMSA_id:90585 DSSD100 2.28.1.6.15.402 OTU 1 seq prokMSA_id:87644 Mesorhizobium sp. NK-2 2.28.1.6.15.403 OTU 161 seqs prokMSA_id:4601 str. MBIC3368 prokMSA_id:5081 Rhizobium sp. LMG 7854 prokMSA_id:5082 Mesorhizobium loti IAM 13588. D12791 prokMSA_id:5083 Mesorhizobium loti LMG 6124 prokMSA_id:5084 Mesorhizobium genosp. T str. BDV5908 prokMSA_id:5085 Mesorhizobium loti str. 261 ICMP 3153 prokMSA_id:5086 Mesorhizobium plurifarium str. ORS 1032 LMG 11892 prokMSA_id:5089 Mesorhizobium plurifarium LMG 10056 prokMSA_id:5091 Mesorhizobium huakuii IFO 15243 prokMSA_id:5093 Mesorhizobium huakuii IAM 14158 . D12797 prokMSA_id:5094 Mesorhizobium amorphae ACCC 19665 prokMSA_id:5096 Mesorhizobium loti LMG 6123 prokMSA_id:5097 Mesorhizobium genosp. U str. BDV5514 prokMSA_id:5098 Mesorhizobium 'SH 15003' str. SH 15003 prokMSA_id:5099 Mesorhizobium plurifarium LMG 7836 prokMSA_id:5122 Mesorhizobium loti str. 3F6g2 LMG 4284. X67230 prokMSA_id:5124 Mesorhizobium genosp. S str. BDV5911 prokMSA_id:5125 Rhizobium CJ2 str. CJ2 S188 USDA 3440 prokMSA_id:5127 Mesorhizobium ciceri str. UPM-Ca7 ATCC 51585 . U07934 prokMSA_id:5129 str. WSM1284. AF178962 prokMSA_id:5130 str. WSM1283. AF178963 prokMSA_id:5131 str. WSM1497. AF178964 prokMSA_id:5132 Rhizobium CJ5 str. CJ5 24N USDA 3398 prokMSA_id:5142 Mesorhizobium loti ATCC 33669 prokMSA_id:5146 Mesorhizobium tianshanense str. A-1BS USDA 3592 prokMSA_id:5149 Rhizobium sp. str. TAL1148 prokMSA_id:5151 Mesorhizobium loti LMG 6125 . X67229 prokMSA_id:5152 Mesorhizobium HL56 str. HL56 prokMSA_id:5153 Mesorhizobium loti str. R8CS USDA 3467 prokMSA_id:5154 Mesorhizobium loti str. R88b USDA 3462 prokMSA_id:5155 Rhizobium sp. str. CIAM 1414 prokMSA_id:5157 Mesorhizobium mediterraneum str. UPM-Ca36 prokMSA_id:5162 Mesorhizobium tianshanense str. A-1BS DSM 11417 prokMSA_id:5163 Rhizobium SH2672 str. SH2672 prokMSA_id:5169 Brucella melitensis ATCC 23444 . L26169 prokMSA_id:5170 Brucella melitensis ATCC 25840 . L26168 prokMSA_id:5173 clone pCON47. U27818 prokMSA_id:5174 Brucella melitensis ATCC 23459 . L26167 prokMSA_id:5175 Brucella melitensis ATCC 23456 . L26166 prokMSA_id:5180 Solomonas fluorantheni. X54743 prokMSA_id:5182 Ochrobactrum anthropi IFO 13694. D63837 prokMSA_id:5183 Ochrobactrum anthropi LMG 3309 prokMSA_id:5184 Ochrobactrum anthropi LMG 3310 prokMSA_id:5185 Ochrobactrum anthropi LMG 3329 prokMSA_id:5187 Ochrobactrum sp. str. S1 prokMSA_id:5189 Brucella melitensis. L37584 prokMSA_id:5191 Brucella M2357/93 str. M2357/93 prokMSA_id:5192 Brucella abortus str. 544 prokMSA_id:5195 Ochrobactrum intermedium str. CNS 2-75 LMG 3301 prokMSA_id:5196 Ochrobactrum intermedium str. 609360 I prokMSA_id:5197 Ochrobactrum anthropi LMG 3306 prokMSA_id:5203 Ochrobactrum 'Relman 1999' str. Relman 1999 prokMSA_id:18432 Ochrobactrum sp. DASA 35030 AB079727 prokMSA_id:18750 Mesorhizobium loti strain LMG 17826t1 prokMSA_id:18759 Brucella melitensis operon B complete prokMSA_id:18788 Mesorhizobium amorphae strain rob6 prokMSA_id:18809 Mesorhizobium sp. Lo9-4 prokMSA_id:20161 Mesorhizobium sp. Lo7-12 prokMSA_id:21021 maize root Zmrc200 prokMSA_id:22176 Mesorhizobium sp. N33 prokMSA_id:22616 Mesorhizobium sp. Rch-19B isolate Rch-19B prokMSA_id:22778 Ochrobactrum sp. 3CB4 prokMSA_id:22857 Mesorhizobium sp. Rch-9865 Rch-9865 prokMSA_id:22979 Mesorhizobium sp. HB5A4 prokMSA_id:23612 Mesorhizobium sp. Rch-9815 isolate Rch-9815 prokMSA_id:23862 Mesorhizobium sp. Rch-10B isolate Rch-10B prokMSA_id:24191 Mesorhizobium sp. Rch-984 isolate Rch-984 prokMSA_id:24617 Mesorhizobium sp. Lc3-2 prokMSA_id:25484 Ochrobactrum sp. BL200-8 AF106618 prokMSA_id:26637 Mesorhizobium loti strain LMG 17826t2 prokMSA_id:27269 Alpha NW001 prokMSA_id:27684 Ochrobactrum sp. 4FB9 prokMSA_id:30025 Mesorhizobium sp. N39 prokMSA_id:30119 Ochrobactrum sp. 2FB10 AF229865 prokMSA_id:35591 Mesorhizobium sp. ORS1080 strain ORS1080 LMG 15287 prokMSA_id:36443 Mesorhizobium sp. Rch-7B isolate Rch-7B prokMSA_id:37613 Mesorhizobium sp. USDA 3466 prokMSA_id:37829 Mesorhizobium sp. N1 prokMSA_id:38207 Ochrobactrum sp. 4FB12 AF229878 prokMSA_id:39018 Ochrobactrum sp. 3CB5 prokMSA_id:39417 Mesorhizobium sp. N20 prokMSA_id:39581 Mesorhizobium sp. Rch-2B isolate Rch-2B prokMSA_id:40931 ECS13 prokMSA_id:41420 Brucella melitensis chromosome I complete prokMSA_id:41882 Mesorhizobium sp. USDA 4003 prokMSA_id:42551 Mesorhizobium sp. N31 prokMSA_id:44325 Brucella melitensis chromosome II complete prokMSA_id:44758 Mesorhizobium loti complete genome section 8/21 prokMSA_id:45557 Mesorhizobium amorphae strain rob8 prokMSA_id:45685 Ochrobactrum sp. 4FB14 prokMSA_id:46665 Mesorhizobium loti complete genome prokMSA_id:48126 Ochrobactrum sp. isolate PR17/sat prokMSA_id:48243 Mesorhizobium sp. ORS1259 strain ORS1259 LMG 15324 prokMSA_id:48732 Ochrobactrum anthropi isolate GH 1568 prokMSA_id:48799 Mesorhizobium sp. Rch-981 isolate Rch-981 prokMSA_id:49290 Mesorhizobium sp. strain rob23 prokMSA_id:49775 Brucella melitensis operon A complete prokMSA_id:49874 Mesorhizobium sp. HN14A16 prokMSA_id:50854 Mesorhizobium sp. Lo5-9 prokMSA_id:52507 Brucella melitensis operon C complete prokMSA_id:56114 Brucella suis 1330 chromosome I section 162 of 190 of the co prokMSA_id:57886 Mesorhizobium sp. SH267neu prokMSA_id:57887 Mesorhizobium sp. SH2851 prokMSA_id:58033 Brucella suis 1330 chromosome II complete prokMSA_id:58651 Brucella suis 1330 chromosome I complete prokMSA_id:58793 Brucella suis 1330 chromosome II section 100 of 108 of the c prokMSA_id:59146 Brucella suis 1330 chromosome I section 143 of 190 of the co prokMSA_id:59527 Ochrobactrum tritici complete prokMSA_id:62975 Rhizobium sp. clone 84-5 rrn prokMSA_id:63530 Mesorhizobium sp. PRF86 complete prokMSA_id:64376 Mesorhizobium plurifarium subsp. americum strain Sn2 prokMSA_id:64377 Mesorhizobium plurifarium subsp. americum strain Ls29 prokMSA_id:64378 Mesorhizobium plurifarium subsp. americum strain Ls38 prokMSA_id:66200 Mesorhizobium ciceri strain Rch9816 prokMSA_id:66251 Ochrobactrum tritici isolate TJ3 prokMSA_id:67340 Ochrobactrum sp. BPC6 prokMSA_id:69342 Mesorhizobium sp. CCBAU25126 prokMSA_id:71992 Mesorhizobium plurifarium strain ORS1255 LMG 15320 AJ295080 prokMSA_id:74017 Mesorhizobium plurifarium strain ORS1096 LMG 15298 AJ295079 prokMSA_id:74322 Ochrobactrum sp. CZ237 isolate CZ237 prokMSA_id:76582 Ochrobactrum gallinifaecis prokMSA_id:77381 Ochrobactrum sp. YYS-2002 complete prokMSA_id:81730 Mesorhizobium tianshanense AY195846 prokMSA_id:81824 Ochrobactrum sp. SP18 AY217768 prokMSA_id:81838 Mesorhizobium mediterraneum strain PECA20 prokMSA_id:81855 Mesorhizobium ciceri strain C-2/2 prokMSA_id:82013 Mesorhizobium sp. ORS207 prokMSA_id:82201 Mesorhizobium mediterraneum strain PECA03 prokMSA_id:85845 Sinorhizobium fredii strain SMH13 prokMSA_id:86871 Mesorhizobium sp. Rop-3 prokMSA_id:86873 Mesorhizobium sp. Leb-2 prokMSA_id:86895 Mesorhizobium sp. NK-1 prokMSA_id:86951 Mesorhizobium sp. Amf-2 prokMSA_id:87097 Mesorhizobium sp. Leb-4 prokMSA_id:87120 Mesorhizobium sp. vgn-4 prokMSA_id:87199 Mesorhizobium sp. Amf-1 prokMSA_id:87207 Mesorhizobium sp. vgn-5 prokMSA_id:87262 Mesorhizobium sp. Loc-1 prokMSA_id:87315 Mesorhizobium sp. Leb-3 prokMSA_id:87396 Mesorhizobium sp. Rop-1 prokMSA_id:87441 Mesorhizobium sp. Rop-4 prokMSA_id:87546 Mesorhizobium sp. Amf-3 prokMSA_id:87612 Mesorhizobium sp. Put-2 prokMSA_id:87647 Mesorhizobium sp. Amf-4 prokMSA_id:87700 Mesorhizobium sp. Leb-1 prokMSA_id:87784 Mesorhizobium sp. Wif-1 prokMSA_id:87868 Mesorhizobium sp. Aei-2 prokMSA_id:87891 Mesorhizobium sp. T2-26 prokMSA_id:87919 Mesorhizobium sp. Amf-5 prokMSA_id:87968 Mesorhizobium sp. Rop-2 prokMSA_id:88263 Stappia sp. M4 prokMSA_id:90087 Mesorhizobium sp. NMB1 prokMSA_id:91199 Ochrobactrum sp. mp-6 prokMSA_id:91228 clone T7-1-C04 prokMSA_id:91304 Ochrobactrum sp. mp-3 prokMSA_id:91422 Ochrobactrum sp. mp-5 prokMSA_id:91445 clone W4A-A02 prokMSA_id:91905 Brucella sp. mp-7 prokMSA_id:92003 Ochrobactrum sp. mp-4 prokMSA_id:92662 Brucellaceae 47211606 prokMSA_id:94870 Ochrobactrum anthropi AB120120 2.28.1.6.16 MSO.LOTI_SUBGROUP 37 seqs 2.28.1.6.16.404 OTU 15 seqs prokMSA_id:5109 str. CC495 prokMSA_id:6213 Sphingomonas paucimobilis IFO 13935 . D13725 prokMSA_id:6215 Sphingomonas paucimobilis GIFU 2395 . D16144 prokMSA_id:6228 Sphingomonas paucimobilis ATCC 29837 . X72722 prokMSA_id:6229 Sphingomonas paucimobilis ATCC 29837 prokMSA_id:6231 Sphingomonas paucimobilis ATCC 10829. NONE prokMSA_id:19915 Sphingomonas sp. MK329 prokMSA_id:26323 Sphingomonas sp. MK341 D84520 prokMSA_id:26552 Methylotrophic loc440 prokMSA_id:42710 Sphingomonas sp. MK331 D84519 prokMSA_id:46971 Sphingomonas paucimobilis prokMSA_id:58865 UNSW4 prokMSA_id:58866 UNSW2 prokMSA_id:59540 CAGY7 strain CAGY7 AF538746 prokMSA_id:90114 Sphingomonas sp. C52 strain C52 AJ575818 2.28.1.6.16.405 OTU 13 seqs prokMSA_id:6190 Sphingomonas sp. str. UN1F1 prokMSA_id:6295 Sphingomonas QSSC1-14 str. QSSC1-14 prokMSA_id:19427 clone HTB9 prokMSA_id:21583 clone 1958 prokMSA_id:27934 Alpha MPD-70 prokMSA_id:39728 Sphingomonas sp. DJ77 prokMSA_id:50339 Sphingobium yanoikuyae prokMSA_id:74832 alpha clone BIfci17 prokMSA_id:75619 clone:TSR16 prokMSA_id:84218 Antarctic R-9478 strain R-9478 prokMSA_id:84464 Alpha K-2058 parital prokMSA_id:86746 Sphingomonas sp. T5-15 prokMSA_id:93667 Sphingomonas sp. A4 2.28.1.6.16.406 OTU 1 seq prokMSA_id:95741 clone B94 2.28.1.6.16.407 OTU 1 seq prokMSA_id:46411 alpha clone BIhii25 2.28.1.6.16.408 OTU 1 seq prokMSA_id:38255 sludge H9 2.28.1.6.16.409 OTU 1 seq prokMSA_id:5110 clone 49519 2.28.1.6.16.410 OTU 2 seqs prokMSA_id:21643 Agrobacterium kpc17 prokMSA_id:74699 Unknown marine alpha JP66.1 AY007677 2.28.1.6.16.411 OTU 1 seq prokMSA_id:48821 alpha clone MERTZ_0CM_263 2.28.1.6.16.412 OTU 1 seq prokMSA_id:25284 alpha clone BIri24 2.28.1.6.16.413 OTU 1 seq prokMSA_id:5138 str. ER2 2.28.1.6.19 DG.ZOOGLOEOIDES_SUBGROUP_I 2 seqs 2.28.1.6.19.414 OTU 1 seq prokMSA_id:51939 glc14 2.28.1.6.19.415 OTU 1 seq prokMSA_id:33043 Q3-24C12 2.28.1.6.20 SRH.FREDII_SUBGROUP 77 seqs 2.28.1.6.20.416 OTU 1 seq prokMSA_id:5257 Rhodobium PENDANT-9 2.28.1.6.20.417 OTU 76 seqs prokMSA_id:5209 Sinorhizobium terangae LMG 7834 prokMSA_id:5210 Sinorhizobium saheli LMG 7837 . X68390 prokMSA_id:5217 Sinorhizobium fredii ATCC 35423 . D14516 prokMSA_id:5226 Sinorhizobium meliloti LMG 6133 prokMSA_id:5227 Sinorhizobium MSMC411 str. MSMC411 prokMSA_id:5231 Sinorhizobium sp. HAMBI 1552 prokMSA_id:5232 Rhizobium XJ96060 str. XJ96060 prokMSA_id:5233 Rhizobium XJ96408 str. XJ96408 prokMSA_id:5245 Sinorhizobium meliloti IAM 12611 prokMSA_id:5249 Sinorhizobium teranga LMG 6463 prokMSA_id:5251 Sinorhizobium meliloti str. RM603 prokMSA_id:5255 Sinorhizobium fredii LMG 6217 prokMSA_id:5258 Sinorhizobium sp. HAMBI 1489 prokMSA_id:5303 Rhizobium CCBAU71462 CCBAU 71462 prokMSA_id:16308 soil clone 60-2 prokMSA_id:16617 Sinorhizobium sp. M3A strain M3A prokMSA_id:18833 Sinorhizobium sp. ORS1873 strain ORS 1873 R2180 prokMSA_id:20311 Sinorhizobium xinjiangensis strain Rx22 prokMSA_id:24151 Sinorhizobium sp. 15C-4 prokMSA_id:24812 Sinorhizobium sp. Rch-9813 isolate Rch-9813 prokMSA_id:25282 Sinorhizobium terangae strain ORS1244 LMG 15317 prokMSA_id:26055 Sinorhizobium morelense complete prokMSA_id:26173 Sinorhizobium sp. L38 97B prokMSA_id:26211 clone d035 AF422644 prokMSA_id:27872 Sinorhizobium sp. S007 prokMSA_id:30671 Arsenite-oxidizing NT-4 prokMSA_id:32066 alpha MERTZ_0CM_99 prokMSA_id:32607 Sinorhizobium xinjiangensis strain CCBAU830804 prokMSA_id:36054 Sinorhizobium sp. C4 prokMSA_id:36231 Sinorhizobium sp. strain BK1 prokMSA_id:36972 Sinorhizobium sp. S002 prokMSA_id:36995 soil clone 1306-2 prokMSA_id:37514 Sinorhizobium sp. C5 prokMSA_id:38881 Sinorhizobium sp. L38 92 prokMSA_id:39113 Sinorhizobium xinjiangensis complete prokMSA_id:39392 Sinorhizobium sp. ORS1231 strain ORS1231 LMG 15307 prokMSA_id:39445 Sinorhizobium sp. Rch-9868 isolate Rch-9868 prokMSA_id:41048 Arsenite-oxidizing NT-3 prokMSA_id:42233 Sinorhizobium sp. C9 prokMSA_id:43191 Sinorhizobium sp. L28 86E prokMSA_id:43632 Sinorhizobium sp. RAT902 strain RAT902 R8390 prokMSA_id:43724 Sinorhizobium kummerowiae prokMSA_id:44374 Sinorhizobium sp. FJ38 32-1-A prokMSA_id:44809 Sinorhizobium terangae strain ORS1082 LMG 15289 prokMSA_id:45045 Sinorhizobium sp. L38 84B prokMSA_id:46106 Sinorhizobium sp. L 74D prokMSA_id:46924 Sinorhizobium meliloti 1021 complete genomes prokMSA_id:48966 Sinorhizobium meliloti strain ORS1044 LMG 15285 prokMSA_id:49783 Sinorhizobium sp. strain BK10 prokMSA_id:50286 Sinorhizobium sp. 1004b prokMSA_id:51380 Sinorhizobium sp. S005 prokMSA_id:52806 Sinorhizobium xinjiangensis strain CCBAU110 prokMSA_id:61016 Sinorhizobium meliloti strain WSM1701 prokMSA_id:63195 Sinorhizobium morelense strain LMG 20571 prokMSA_id:63196 Sinorhizobium adhaerens strain LMG 20582 prokMSA_id:63199 Sinorhizobium adhaerens strain 5D19 prokMSA_id:63200 Sinorhizobium adhaerens strain HAMBI 1631 prokMSA_id:63996 Sinorhizobium meliloti 1021 complete chromosome; segment 11/ prokMSA_id:64001 Sinorhizobium meliloti 1021 complete chromosome; segment 10/ prokMSA_id:64021 Sinorhizobium meliloti 1021 complete chromosome; segment 1/1 prokMSA_id:64288 Ensifer adhaerens prokMSA_id:69312 Sinorhizobium morelense prokMSA_id:71225 Sinorhizobium terangae strain ORS1254 LMG 15319 AJ295075 prokMSA_id:72907 mle1-44 AF280865 prokMSA_id:74392 Sinorhizobium sp. ORS1236 strain ORS1236 LMG 18076 AJ295077 prokMSA_id:74439 Sinorhizobium sp. ORS1085 strain ORS1085 LMG 15292 AJ295078 prokMSA_id:77951 Sinorhizobium kummerowiae prokMSA_id:82107 Sinorhizobium meliloti strain GVPV12 AY196962 prokMSA_id:82287 Sinorhizobium meliloti strain LMTR32 prokMSA_id:83138 Sinorhizobium fredii strain USDA205 prokMSA_id:83912 Sinorhizobium fredii strain HH303 prokMSA_id:83976 Sinorhizobium fredii strain HH103 prokMSA_id:85246 Sinorhizobium fredii strain HH003 prokMSA_id:85533 Sinorhizobium fredii strain USDA257 prokMSA_id:85924 Rhizobium sp. NGR234 prokMSA_id:87019 Sinorhizobium sp. Mes-2 2.28.1.6.24 RHB.LEGUMINOSARUM_SUBGROUP 4 seqs 2.28.1.6.24.1 RHB.LEGU11_SUBGROUP 1 seq 2.28.1.6.24.1.418 OTU 1 seq prokMSA_id:90420 soil clone HN1-6 2.28.1.6.24.3 RHB.SP3618_SUBGROUP 3 seqs 2.28.1.6.24.3.419 OTU 3 seqs prokMSA_id:5220 Sinorhizobium meliloti IAM 12611. D12783 prokMSA_id:5222 Sinorhizobium fredii IAM 13625. D12792 prokMSA_id:87139 Rhizobium sp. Aei-4 2.28.1.6.26 AGROBACTERIUM_SUBGROUP 18 seqs 2.28.1.6.26.1 DV.RIBOFLAVINA_SUBGROUP 3 seqs 2.28.1.6.26.1.420 OTU 3 seqs prokMSA_id:19085 alpha clone BIfdii32 prokMSA_id:51695 clone C26-26 prokMSA_id:72782 Azospirillum sp. B518 AB049112 2.28.1.6.26.3 AG.TUMEFACIENS_SUBGROUP 13 seqs 2.28.1.6.26.3.421 OTU 10 seqs prokMSA_id:26338 Agrobacterium tumefaciens strain IrT-JG-6 prokMSA_id:37624 Agrobacterium sp. IrT-JG14-14 prokMSA_id:49700 Agrobacterium sp. IrT-JG14-33 prokMSA_id:56163 alpha clone ccspost2147 AY133103 prokMSA_id:59901 alpha clone ccspost215 prokMSA_id:62396 alpha clone FTLM218 prokMSA_id:66249 Agrobacterium tumefaciens isolate C4 prokMSA_id:70205 Agrobacterium albertimagni complete prokMSA_id:94089 Agrobacterium tumefaciens strain UP-3 prokMSA_id:95229 alpha clone NAB19 2.28.1.6.26.3.422 OTU 2 seqs prokMSA_id:66958 Agrobacterium sp. PB prokMSA_id:89669 Alpha pACH83 2.28.1.6.26.3.423 OTU 1 seq prokMSA_id:44165 Agrobacterium sp. IrT-JG14-24 2.28.1.6.26.4 AG.VITIS_SUBGROUP 2 seqs 2.28.1.6.26.4.424 OTU 2 seqs prokMSA_id:5451 str. NT-26 prokMSA_id:79109 clone csbio160171 2.28.1.6.27 BARTONELLA_SUBGROUP 23 seqs 2.28.1.6.27.425 OTU 11 seqs prokMSA_id:5463 Bartonella grahamii str. V2 NCTC 12860 prokMSA_id:5472 Bartonella bacilliformis str. LA6.3. Z70003 prokMSA_id:5476 Bartonella clarridgeiae str. Houston-2 cat ATCC 51734 . X892 prokMSA_id:5477 Bartonella clarridgeiae CIP 104772 prokMSA_id:5478 Bartonella sp. str. 94-F40 prokMSA_id:5505 Bartonella doshiae str. R18 NCTC 12862 prokMSA_id:16865 Bartonella clarridgeiae strain Ber-K185 prokMSA_id:17437 Bartonella vinsonii subsp. arupensis prokMSA_id:37097 Rhizobium sp. strain RH 44 508bp Y10172 prokMSA_id:43831 Bartonella sp. Deer 159/660/1 prokMSA_id:74316 Bartonella sp 2.28.1.6.27.426 OTU 9 seqs prokMSA_id:18609 sludge S36 AF234756 prokMSA_id:19640 Bartonella sp. 1021 prokMSA_id:20378 sludge A20 AF234728 prokMSA_id:21846 Azospirillum sp. B506 prokMSA_id:28404 clone CRD99-17 prokMSA_id:35005 clone CR99-7-15 prokMSA_id:35722 clone CR99-7-04 prokMSA_id:66504 clone cvf70169 prokMSA_id:97400 clone EACUL1F4 2.28.1.6.27.427 OTU 3 seqs prokMSA_id:5135 Ahrensia kielensis IAM 12618 . D88524 prokMSA_id:5158 Phyllobacterium rubiacearum IAM 13587. D12790 prokMSA_id:21875 Bartonella sp 1007a 2.28.1.7 CAULOBACTER_GROUP 128 seqs 2.28.1.7.3 CAU.VIBRIOIDES_SUBGROUP_II 32 seqs 2.28.1.7.3.428 OTU 1 seq prokMSA_id:55270 clone D 2.28.1.7.3.429 OTU 2 seqs prokMSA_id:5557 Caulobacter fusiformis ATCC 15257 prokMSA_id:93768 alpha clone JG36-GS-63 2.28.1.7.3.430 OTU 8 seqs prokMSA_id:4815 Afipia genosp. 9 str. G8989 prokMSA_id:5415 Agrobacterium tumefaciens str. IAM 13558. D13943 prokMSA_id:5560 Caulobacter henricii ATCC 15253 . AJ007805 prokMSA_id:20698 Afipia sp. A8-3 3'- prokMSA_id:43530 GKS2-215 prokMSA_id:52614 prokMSA_id:65636 soil clone S1140 prokMSA_id:89320 Caulobacter sp. clone I-14 2.28.1.7.3.431 OTU 16 seqs prokMSA_id:5113 Aquamicrobium defluvii DSM 11603 prokMSA_id:5530 Caulobacter sp. str. FWC18 prokMSA_id:5535 Caulobacter sp. str. FWC33 prokMSA_id:5536 Caulobacter sp. str. FWC35 prokMSA_id:5537 Caulobacter sp. str. FWC41 prokMSA_id:5564 Asticcacaulis biprosthecium str. MBIC3411 ATCC 27554 prokMSA_id:22289 Mesorhizobium sp. 4FB11 prokMSA_id:25580 Asticcacaulis biprosthecium strain DSM 4723 prokMSA_id:36796 alpha clone BImi11 prokMSA_id:55851 clone HP1B78 prokMSA_id:59329 clone HP1U21 prokMSA_id:59347 clone HP1B26 prokMSA_id:72415 clone HP1U61 AF502240 prokMSA_id:91213 G8 prokMSA_id:93202 Asticcacaulis sp. SA7 prokMSA_id:94862 clone F-OTU11 2.28.1.7.3.432 OTU 1 seq prokMSA_id:87263 Ancylobacter sp. T5-17 2.28.1.7.3.433 OTU 4 seqs prokMSA_id:5519 Caulobacter vibrioides prokMSA_id:5555 Caulobacter vibrioides str. CB13 prokMSA_id:55875 Caulobacter crescentus ; tRNA-Ile and tRNA-Ala genes complet prokMSA_id:999996 SYN Cau.cres 2.28.1.7.5 CAU.SUBVIBRIOIDES_SUBGROUP 96 seqs 2.28.1.7.5.434 OTU 1 seq prokMSA_id:88669 DSSF55 2.28.1.7.5.435 OTU 30 seqs prokMSA_id:26810 Achromobacter sp. LMG5410 AF227158 prokMSA_id:27535 alpha clone SM1D08 prokMSA_id:31969 alpha isolate C6/8 prokMSA_id:39707 alpha isolate C6/17 prokMSA_id:47270 Alpha C6-19 isolate C6-19 prokMSA_id:70624 A.lipoferum F X79736 prokMSA_id:70672 Achromobacter sp. LMG5431 AF227159 prokMSA_id:72136 Achromobacter sp. LMG5430 AF227160 prokMSA_id:74042 Achromobacter sp. LMG5411 AF227157 prokMSA_id:88123 DSSD52 prokMSA_id:88157 HOClCi30 prokMSA_id:88349 HOClCi45 prokMSA_id:88419 DSSF56 AY328678 prokMSA_id:88517 DSSF23 prokMSA_id:88571 HOClCi49 prokMSA_id:88915 DSSF70 prokMSA_id:89071 HOClCi13 AY328562 prokMSA_id:89101 DSSF8 prokMSA_id:89167 DSSF31 prokMSA_id:89315 DSSF4 prokMSA_id:89551 HOClCi19 prokMSA_id:89570 HOClCi40 prokMSA_id:89583 DSSF60 prokMSA_id:89652 HOClCi17 prokMSA_id:89819 DSSF14 prokMSA_id:89955 HOClCi2 AY328551 prokMSA_id:90169 DSSF57 prokMSA_id:90327 HOClCi66 prokMSA_id:90360 HOClCi20 prokMSA_id:91427 K2-3 2.28.1.7.5.436 OTU 2 seqs prokMSA_id:5596 Brevundimonas diminuta LMG 2089 prokMSA_id:5597 Brevundimonas diminuta LMG 2337 2.28.1.7.5.437 OTU 2 seqs prokMSA_id:4710 Blastochloris sulfoviridis DSM 729 prokMSA_id:43186 Brevundimonas variabilis strain ATCC 15255 2.28.1.7.5.438 OTU 35 seqs prokMSA_id:4747 str. AML-A3. AF177298 prokMSA_id:4752 Methylocystis M str. M. U81595 prokMSA_id:4753 Methylocystis WI 14 str. WI 14 prokMSA_id:4755 Methylocystis EB-1 str. EB-1 prokMSA_id:5568 Caulobacter intermedius str. CB63 ACM 2608 prokMSA_id:5575 Brevundimonas FWC14 str. FWC14 prokMSA_id:5578 Caulobacter intermedius str. CB63 ATCC 15262 prokMSA_id:5579 Brevundimonas bacteroides str. CB7 LMG 15096 prokMSA_id:5584 Brevundimonas V4.BO.10 str. V4.BO.10 prokMSA_id:5586 Caulobacter sp. str. CB28 DSM 10670 prokMSA_id:32399 Methylobacterium sp. G296-15 prokMSA_id:36908 Rhizobiaceae str. M100 prokMSA_id:49192 alpha clone SM2B07 prokMSA_id:53033 Brevundimonas intermedia strain ATCC 15262 prokMSA_id:55601 Methylocystis sp. 42/22 strain 42/22 prokMSA_id:56124 Methylocystis sp. M42/1 strain M42/1 prokMSA_id:56187 Methylocystis sp. H9a strain H9a prokMSA_id:56327 clone UP7 prokMSA_id:58408 Methylocystis sp. 18-2 prokMSA_id:61187 clone UP4 prokMSA_id:61188 clone UP6 prokMSA_id:61191 clone UP5 prokMSA_id:64201 Methylocystis sp. M31 strain M31 prokMSA_id:64206 Methylocystis sp. KS7 strain KS7 prokMSA_id:64207 Methylocystis sp. KS3 strain KS3 prokMSA_id:64225 Methylocystis sp. IMET 10489 strain IMET 10489 prokMSA_id:64228 Methylocystis sp. IMET 10484 strain IMET 10484 prokMSA_id:68458 Symbiont cf. Methylobacterium of Acromyrmex octospinosus prokMSA_id:73480 Brevundimonas sp. LMG 19834 strain LMG 19834 AJ300773 prokMSA_id:81626 Methylobacterium sp. BJ001 and -23S intergenic spacer region prokMSA_id:82248 Methylobacterium sp. BJ001 and IGS clone 2 prokMSA_id:84672 Methylobacterium sp. BJ001 and -23S intergenic spacer comple prokMSA_id:85734 clone ABLCf14 AF499910 prokMSA_id:88130 Brevundimonas intermedia strain MR320R prokMSA_id:89707 DSSD81 2.28.1.7.5.439 OTU 2 seqs prokMSA_id:4977 str. BTH prokMSA_id:5595 Brevundimonas diminuta IAM 12691 2.28.1.7.5.440 OTU 1 seq prokMSA_id:74841 alpha rcr_47 2.28.1.7.5.441 OTU 1 seq prokMSA_id:89596 DSSF59 2.28.1.7.5.442 OTU 1 seq prokMSA_id:44086 alpha rcr_1 2.28.1.7.5.443 OTU 16 seqs prokMSA_id:5126 str. MBIC3923 prokMSA_id:5554 Caulobacter sp. str. FWC38 prokMSA_id:5615 Mycoplana bullata IAM 13153 . D12785 prokMSA_id:5616 Caulobacter MBIC3983 str. MBIC3983 prokMSA_id:5617 Brevundimonas subvibrioides str. CB81 LMG 14903 prokMSA_id:5619 Brevundimonas FWC05 str. FWC05. AJ227794 prokMSA_id:5620 Brevundimonas FWC43 str. FWC43 prokMSA_id:5622 Caulobacter sp. str. CB66 DSM 10556 prokMSA_id:5623 Caulobacter sp. str. CB26 DSM 6811 prokMSA_id:5624 Caulobacter sp. str. CB35 DSM 10560 prokMSA_id:22521 clone CR98-5-47 prokMSA_id:42557 alpha rcr_45 prokMSA_id:71758 alpha strain OS-123B AJ311963 prokMSA_id:89127 DSSD53 prokMSA_id:90002 Drinking water MA11 prokMSA_id:90689 Drinking water MA9 2.28.1.7.5.444 OTU 1 seq prokMSA_id:56673 alpha FL12F01 2.28.1.7.5.445 OTU 1 seq prokMSA_id:5603 Brevundimonas vesicularis ACM 2862 2.28.1.7.5.446 OTU 1 seq prokMSA_id:5618 Brevundimonas FWC04 str. FWC04 2.28.1.7.5.447 OTU 1 seq prokMSA_id:50111 alpha FL07H12 2.28.1.7.5.448 OTU 1 seq prokMSA_id:72461 alpha FL12F11 2.28.1.8 RHODOBACTER-RHODOVULUM-HYPHOMONAS-RICKETTSIA 210 seqs 2.28.1.8.1 RHODOBACTER_GROUP 75 seqs 2.28.1.8.1.1 ROS.LITORALIS_SUBGROUP 31 seqs 2.28.1.8.1.1.1 ROS.DENITRIFICANS_SUBGROUP 27 seqs 2.28.1.8.1.1.1.449 OTU 5 seqs prokMSA_id:17964 Roseobacter 667-19 isolate 667-19 prokMSA_id:35200 Marine SCRIPPS_101 prokMSA_id:38427 Vestimentiferan symbiont TW-3 AB042416 prokMSA_id:78686 Sulfitobacter deliciae strain KMM 3554 prokMSA_id:78878 Sulfitobacter dubium strain KMM 3584 2.28.1.8.1.1.1.450 OTU 1 seq prokMSA_id:48257 marine alpha AS-19 2.28.1.8.1.1.1.451 OTU 12 seqs prokMSA_id:5841 Caulobacter maris ATCC 15268 . AJ007807 prokMSA_id:5845 Caulobacter halobacteroides ATCC 15269 prokMSA_id:5848 NCIMB 2022 prokMSA_id:5851 Maricaulis MCS11 str. MCS11 prokMSA_id:5855 Maricaulis MCS28 str. MCS28 prokMSA_id:27292 Maricaulis sp. MCS31 strain MCS31 prokMSA_id:31210 alpha kpc123rc prokMSA_id:32951 Maricaulis sp. MCS30 strain MCS30 prokMSA_id:33484 Maricaulis maris strain ATCC 15269 prokMSA_id:49200 Maricaulis maris strain ATCC 15268 prokMSA_id:49396 Maricaulis sp. MCS10 strain MCS10 prokMSA_id:49670 clone KS14 2.28.1.8.1.1.1.452 OTU 9 seqs prokMSA_id:2584 Microscilla sericea str. SIO-7 ATCC 23182. M58794 prokMSA_id:2620 Flexibacter tractuosus str. Lewis BA-3 ATCC 23168 . M58789 prokMSA_id:19323 CFB groupbacterium NAC60-3 AF245645 prokMSA_id:58607 Microscilla sericea strain:IFO 15983 prokMSA_id:58616 Flexibacter tractuosus strain:IFO 15989 prokMSA_id:58617 Flexibacter tractuosus strain:IFO 15981 prokMSA_id:58619 Flexibacter tractuosus strain:IFO 15979 prokMSA_id:90078 Bacteroidetes MWH-CFBk5 isolate MWH-CFBk5 AJ565431 prokMSA_id:94417 clone A120 complete 2.28.1.8.1.1.2 RG.ALGICOLA_SUBGROUP 2 seqs 2.28.1.8.1.1.2.453 OTU 2 seqs prokMSA_id:42048 Hydrothermal vent strain AG33 prokMSA_id:45968 Marine SE45 2.28.1.8.1.1.5 OCT.ANTARCTICUS_SUBGROUP 2 seqs 2.28.1.8.1.1.5.454 OTU 2 seqs prokMSA_id:26286 marine alpha AS-35 prokMSA_id:61950 Paracoccus-like sp. V4.BP.10 marine isolate 2.28.1.8.1.2 PARACOCCUS_SUBGROUP 44 seqs 2.28.1.8.1.2.1 PAR.DENITRIFICANS_SUBGROUP 22 seqs 2.28.1.8.1.2.1.455 OTU 1 seq prokMSA_id:63012 Paracoccus sp. WB1 2.28.1.8.1.2.1.456 OTU 1 seq prokMSA_id:86027 Paracoccus aminovorans isolate dPAO9 2.28.1.8.1.2.1.457 OTU 1 seq prokMSA_id:92016 clone K2-S-3 2.28.1.8.1.2.1.458 OTU 10 seqs prokMSA_id:5740 Paracoccus MBIC1145 str. MBIC1145 prokMSA_id:5761 Paracoccus aminovorans str. DM-82 JCM 7685 prokMSA_id:5766 Paracoccus alcaliphilus str. TK 1015 JCM 7364 prokMSA_id:24018 Paracoccus sp. T231 prokMSA_id:38102 Paracoccus alcaliphilus AY014177 prokMSA_id:78216 Paracoccus sp. TUT1021 prokMSA_id:80137 Arctic sea ice associated ARK10006 prokMSA_id:96518 clone F15 prokMSA_id:96526 clone F11 prokMSA_id:97186 clone F46 2.28.1.8.1.2.1.459 OTU 9 seqs prokMSA_id:5745 Paracoccus KS2 prokMSA_id:5760 Paracoccus thiocyanatus str. THI 011; 1-8A IAM 12816 . D3224 prokMSA_id:22206 Paracoccus yeeii strain G1212 AY014173 prokMSA_id:23110 Paracoccus yeeii strain G4878 prokMSA_id:28217 Paracoccus yeeii strain G6446 prokMSA_id:33902 Paracoccus yeeii strain H13 prokMSA_id:44012 Paracoccus yeeii strain G6155 prokMSA_id:52386 Paracoccus yeeii strain G1968 AY014171 prokMSA_id:91772 K2-53A 2.28.1.8.1.2.2 PAR.AMINOPHILUS_SUBGROUP 1 seq 2.28.1.8.1.2.2.460 OTU 1 seq prokMSA_id:5769 Paracoccus MBIC4017 str. MBIC4017 2.28.1.8.1.2.4 RB.VELDKAMPII_SUBGROUP 1 seq 2.28.1.8.1.2.4.461 OTU 1 seq prokMSA_id:56159 Rhodobacter sp. AP-10 2.28.1.8.1.2.5 STR.SW2_SUBGROUP 4 seqs 2.28.1.8.1.2.5.462 OTU 4 seqs prokMSA_id:5785 str. from 400 mbsl of lake Baikal RUSSIA prokMSA_id:26781 clone CR98-35-68 prokMSA_id:29360 WD236 clone WD236 AJ292596 prokMSA_id:29427 clone CRD99-50 2.28.1.8.1.2.6 RB.SPHAEROIDES_SUBGROUP 2 seqs 2.28.1.8.1.2.6.463 OTU 1 seq prokMSA_id:33547 Roseobacter kpc34 2.28.1.8.1.2.6.464 OTU 1 seq prokMSA_id:21491 alpha clone SM1C11 2.28.1.8.1.2.7 AMR.MACAUENSIS_SUBGROUP 3 seqs 2.28.1.8.1.2.7.465 OTU 2 seqs prokMSA_id:5804 Amaricoccus kaplicensis str. Ben101 ACM 5099 . U88041 prokMSA_id:5806 Tetracoccus cechii str. Czech 2.28.1.8.1.2.7.466 OTU 1 seq prokMSA_id:66503 clone cvf74058 2.28.1.8.1.2.8 RB.CAPSULATUS_SUBGROUP 11 seqs 2.28.1.8.1.2.8.467 OTU 5 seqs prokMSA_id:17078 sludge A27 AF234729 prokMSA_id:22427 sludge A6 prokMSA_id:23200 sludge A41 prokMSA_id:34114 sludge H42 prokMSA_id:40921 sludge S2 AF234725 2.28.1.8.1.2.8.468 OTU 1 seq prokMSA_id:77954 Rhodobacter sp. B-7005 2.28.1.8.1.2.8.469 OTU 5 seqs prokMSA_id:5815 Rhodobacter capsulatus str. C5. D16427 prokMSA_id:5816 Rhodobacter TCRI 3 str. TCRI 3 prokMSA_id:5817 Rhodobacter TCRI 5 str. TCRI 5 prokMSA_id:5818 Rhodobacter TCRI str. TCRI 2 prokMSA_id:71562 alpha clone DC5-50-1 2.28.1.8.2 RHODOVULUM_GROUP 12 seqs 2.28.1.8.2.1 RHV.ADRIATICUM_SUBGROUP 2 seqs 2.28.1.8.2.1.470 OTU 1 seq prokMSA_id:5825 Rhodovulum adriaticum DSM 2781 2.28.1.8.2.1.471 OTU 1 seq prokMSA_id:77962 Rhodovulum sp. AT2111 2.28.1.8.2.2 RHV.SULFIDOPHILUM_SUBGROUP 10 seqs 2.28.1.8.2.2.472 OTU 9 seqs prokMSA_id:5831 Rhodovulum sulfidophilum str. TW13. D16422 prokMSA_id:5832 Rhodovulum sulfidophilum str. W4 DSM 1374 . D16423 prokMSA_id:5834 Rhodovulum sulfidophilum str. TW13 prokMSA_id:5836 Rhodovulum sulfidophilum str. W12 DSM 2351 prokMSA_id:5838 Rhodovulum sp. str. MB263 prokMSA_id:5840 Rhodovulum sp. str. MB260. D16420 prokMSA_id:60362 Rhodobacter group PH33 prokMSA_id:73644 R. sulfidophilum prokMSA_id:78323 Rhodovulum sp. AR2102 2.28.1.8.2.2.473 OTU 1 seq prokMSA_id:5835 Rhodovulum sulfidophilum str. W-1S FERM P-15320 2.28.1.8.3 HYPHOMONAS_GROUP 2 seqs 2.28.1.8.3.1 CAU.HALOBACTEROIDES_SUBGROUP 2 seqs 2.28.1.8.3.1.474 OTU 1 seq prokMSA_id:88159 DSSD59 2.28.1.8.3.1.475 OTU 1 seq prokMSA_id:24031 Maricaulis sp. clone MERTZ_0CM_265 2.28.1.8.5 RICKETTSIA_AND_OTHERS 121 seqs 2.28.1.8.5.4 HOLOSPORA_SUBGROUP 4 seqs 2.28.1.8.5.4.476 OTU 2 seqs prokMSA_id:5918 Caedibacter caryophila str. 221 . X71837 prokMSA_id:21579 Caedibacter caryophila isolate BGD19 2.28.1.8.5.4.477 OTU 2 seqs prokMSA_id:5917 Holospora obtusa prokMSA_id:22925 H.obtusa X58198 2.28.1.8.5.5 RICKETTSIA_SUBGROUP 15 seqs 2.28.1.8.5.5.478 OTU 1 seq prokMSA_id:35350 alpha clone SM1B06 2.28.1.8.5.5.479 OTU 4 seqs prokMSA_id:39764 Rickettsia endosymbiont of Hemicrepsis marginata prokMSA_id:52394 Rickettsia endosymbiont of Torix tagoi prokMSA_id:65330 Rickettsia sp. DT1 prokMSA_id:93807 Rickettsia endosymbiont of Nuclearia pattersoni 2.28.1.8.5.5.480 OTU 3 seqs prokMSA_id:5947 Rickettsia australis str. RHS prokMSA_id:5962 Rickettsia sp. str. Puerto Rico prokMSA_id:5970 Rickettsia rhipicephali str. 3-7-6 2.28.1.8.5.5.481 OTU 7 seqs prokMSA_id:5943 Rickettsia akari str. MK Kaplan prokMSA_id:5960 Rickettsia typhi str. Wilmington. M20499 prokMSA_id:5964 Rickettsia sp. str. ELB agent prokMSA_id:5969 Rickettsia akari str. Hartford. U12458 prokMSA_id:5974 Rickettsia rickettsii str. R ATCC VR-891 . M21293 prokMSA_id:28211 Rickettsia sp. BJ-90 prokMSA_id:65324 Rickettsia sp. IO1 2.28.1.8.5.8 EHR.RISTICII_SUBGROUP 15 seqs 2.28.1.8.5.8.482 OTU 1 seq prokMSA_id:17901 Ehrlichia sp. 'trout isolate' 2.28.1.8.5.8.483 OTU 14 seqs prokMSA_id:5996 Ehrlichia risticii str. Illinois ATCC VR-986 alpha purple prokMSA_id:5998 Ehrlichia risticii prokMSA_id:6001 Ehrlichia risticii str. Kentucky isolate prokMSA_id:6004 Ehrlichia risticii prokMSA_id:6005 Ehrlichia risticii str. SHSN-1 prokMSA_id:6006 Ehrlichia risticii str. SHSN-2 prokMSA_id:6007 Ehrlichia sp prokMSA_id:6008 Ehrlichia risticii str. Ohio isolate 081 prokMSA_id:6011 Ehrlichia sennetsu str. 11908 prokMSA_id:6012 Ehrlichia sennetsu str. Miyayama prokMSA_id:24883 Ehrlichia risticii isolate S22 prokMSA_id:33480 Ehrlichia risticii from Caddisfly larvae prokMSA_id:67336 Ehrlichia risticii from horse 1 prokMSA_id:67337 Ehrlichia risticii from horse 2 2.28.1.8.5.9 EHRLICHIA_SUBGROUP 52 seqs 2.28.1.8.5.9.1 EHR.CANIS_SUBGROUP 27 seqs 2.28.1.8.5.9.1.484 OTU 10 seqs prokMSA_id:6018 Ehrlichia chaffeensis complete prokMSA_id:6026 Ehrlichia ewingii str. Stillwater prokMSA_id:6027 Ehrlichia ewingii str. 95E9-TS. U96436 prokMSA_id:6028 Ehrlichia muris str. AS145 ATCC VR-1411 prokMSA_id:6030 Ehrlichia muris str. I268 prokMSA_id:6031 Ehrlichia muris str. NA1 prokMSA_id:30672 Ehrlichia sp. HI-2000 prokMSA_id:36711 Ehrlichia sp. HF565 prokMSA_id:40434 Ehrlichia sp. Anan prokMSA_id:72320 Ehrlichia ewingii strain 95E7-MK U96435 2.28.1.8.5.9.1.485 OTU 17 seqs prokMSA_id:6014 Ehrlichia chaffeensis str. 91HE17 prokMSA_id:6016 Ehrlichia chaffeensis str. Jax prokMSA_id:6017 Ehrlichia chaffeensis str. St. Vincent prokMSA_id:6019 Ehrlichia canis str. Oklahoma prokMSA_id:6022 Ehrlichia canis str. Gzh982 prokMSA_id:6023 Ehrlichia sp. str. Germishuys prokMSA_id:6032 Ehrlichia chaffeensis str. Arkansas prokMSA_id:6033 Ehrlichia canis str. Florida prokMSA_id:19195 Ehrlichia chaffeensis strain Arkansas ; and succinate dehydr prokMSA_id:24968 Ehrlichia sp. ERm58 prokMSA_id:27178 Ehrlichia canis strain 95E10-26039 U96437 prokMSA_id:32463 Ehrlichia canis isolate VHE prokMSA_id:38150 Ehrlichia ovina prokMSA_id:38268 Ehrlichia canis isolate VDE prokMSA_id:41424 Ehrlichia sp. Tibet prokMSA_id:52566 Ehrlichia canis isolate VTE prokMSA_id:94201 Ehrlichia canis strain Kagoshima 1 2.28.1.8.5.9.2 EHR.PHAGOCYTOPHILA_SUBGROUP 25 seqs 2.28.1.8.5.9.2.486 OTU 1 seq prokMSA_id:25427 Anaplasma centrale 2.28.1.8.5.9.2.487 OTU 20 seqs prokMSA_id:6049 Ehrlichia sp prokMSA_id:6051 Ehrlichia sp prokMSA_id:6053 Ehrlichia sp prokMSA_id:6054 Ehrlichia sp. str. rosa prokMSA_id:6058 Ehrlichia sp. str. Swiss horse 1 prokMSA_id:6061 Ehrlichia phagocytophila str. OS Old Sourhope prokMSA_id:6062 Ehrlichia phagocytophila str. FG feral goat prokMSA_id:6066 Ehrlichia 'HGE agent' str. CAHU-HGE1 prokMSA_id:6067 Ehrlichia 'HGE agent' str. CAHU-HGE2 prokMSA_id:6069 Ehrlichia equi str. CASOLJ prokMSA_id:6070 Ehrlichia equi str. CAMEBS prok