The CASCADE-P project provides a current and comprehensive 16S rDNA prokaryotic multiple sequence alignment (prokMSA) for browsing, blasting, probing, and downloading.  The data and tools presented by CASCADE-P can assist the researcher in choosing phylogenetically specific probes.

Browse phylogenetic tree at various levels of resolution.

Specify a Slice (sub-alignment) of the prokMSA to view/download.

Compile Consensus sequences from any branch of the phylogenetic tree.

BLAST user's sequences against the prokMSA.

Search for sequences of interest.

Locate Probes and primers within the prokMSA.

Download entire prokMSA aligned collection.